data_3S6M # _entry.id 3S6M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3S6M pdb_00003s6m 10.2210/pdb3s6m/pdb RCSB RCSB065826 ? ? WWPDB D_1000065826 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id BupsA.01418.a _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3S6M _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'The structure of a Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clifton, M.C.' 1 ? primary 'Edwards, T.E.' 2 ? # _cell.length_a 80.657 _cell.length_b 80.657 _cell.length_c 43.338 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3S6M _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63' _symmetry.entry_id 3S6M _symmetry.Int_Tables_number 173 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase' 18211.398 1 5.2.1.8 ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 4 water nat water 18.015 156 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIANEANNGL KNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVV IEKAVVV ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIANEANNGL KNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVV IEKAVVV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier BupsA.01418.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 VAL n 1 7 GLU n 1 8 LEU n 1 9 HIS n 1 10 THR n 1 11 ASN n 1 12 HIS n 1 13 GLY n 1 14 VAL n 1 15 ILE n 1 16 LYS n 1 17 LEU n 1 18 GLU n 1 19 LEU n 1 20 ASP n 1 21 GLU n 1 22 ALA n 1 23 LYS n 1 24 ALA n 1 25 PRO n 1 26 LYS n 1 27 THR n 1 28 VAL n 1 29 GLU n 1 30 ASN n 1 31 PHE n 1 32 LEU n 1 33 ASN n 1 34 TYR n 1 35 VAL n 1 36 LYS n 1 37 LYS n 1 38 GLY n 1 39 HIS n 1 40 TYR n 1 41 ASP n 1 42 GLY n 1 43 THR n 1 44 ILE n 1 45 PHE n 1 46 HIS n 1 47 ARG n 1 48 VAL n 1 49 ILE n 1 50 ASN n 1 51 GLY n 1 52 PHE n 1 53 MET n 1 54 ILE n 1 55 GLN n 1 56 GLY n 1 57 GLY n 1 58 GLY n 1 59 PHE n 1 60 GLU n 1 61 PRO n 1 62 GLY n 1 63 LEU n 1 64 LYS n 1 65 GLN n 1 66 LYS n 1 67 PRO n 1 68 THR n 1 69 ASP n 1 70 ALA n 1 71 PRO n 1 72 ILE n 1 73 ALA n 1 74 ASN n 1 75 GLU n 1 76 ALA n 1 77 ASN n 1 78 ASN n 1 79 GLY n 1 80 LEU n 1 81 LYS n 1 82 ASN n 1 83 ASP n 1 84 THR n 1 85 TYR n 1 86 THR n 1 87 ILE n 1 88 ALA n 1 89 MET n 1 90 ALA n 1 91 ARG n 1 92 THR n 1 93 ASN n 1 94 ASP n 1 95 PRO n 1 96 HIS n 1 97 SER n 1 98 ALA n 1 99 THR n 1 100 ALA n 1 101 GLN n 1 102 PHE n 1 103 PHE n 1 104 ILE n 1 105 ASN n 1 106 VAL n 1 107 ASN n 1 108 ASP n 1 109 ASN n 1 110 GLU n 1 111 PHE n 1 112 LEU n 1 113 ASN n 1 114 HIS n 1 115 SER n 1 116 SER n 1 117 PRO n 1 118 THR n 1 119 PRO n 1 120 GLN n 1 121 GLY n 1 122 TRP n 1 123 GLY n 1 124 TYR n 1 125 ALA n 1 126 VAL n 1 127 PHE n 1 128 GLY n 1 129 LYS n 1 130 VAL n 1 131 VAL n 1 132 GLU n 1 133 GLY n 1 134 GLN n 1 135 ASP n 1 136 ILE n 1 137 VAL n 1 138 ASP n 1 139 LYS n 1 140 ILE n 1 141 LYS n 1 142 ALA n 1 143 VAL n 1 144 LYS n 1 145 THR n 1 146 GLY n 1 147 SER n 1 148 LYS n 1 149 GLY n 1 150 PHE n 1 151 HIS n 1 152 GLN n 1 153 ASP n 1 154 VAL n 1 155 PRO n 1 156 ASN n 1 157 ASP n 1 158 ASP n 1 159 VAL n 1 160 VAL n 1 161 ILE n 1 162 GLU n 1 163 LYS n 1 164 ALA n 1 165 VAL n 1 166 VAL n 1 167 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BURPS1710b_2684 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 1710b _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia pseudomallei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 320372 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3JQT3_BURP1 _struct_ref.pdbx_db_accession Q3JQT3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIANEANNGLKNDT YTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKA VVV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3S6M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q3JQT3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 163 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 163 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3S6M GLY A 1 ? UNP Q3JQT3 ? ? 'expression tag' -3 1 1 3S6M PRO A 2 ? UNP Q3JQT3 ? ? 'expression tag' -2 2 1 3S6M GLY A 3 ? UNP Q3JQT3 ? ? 'expression tag' -1 3 1 3S6M SER A 4 ? UNP Q3JQT3 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3S6M _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '50% PEG 400, 0.1M NaAcetate pH 4.5, 200mM Lithium sulfate. Direct cryoprotection, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2011-05-23 _diffrn_detector.details 'VariMax Cu-HF' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3S6M _reflns.d_resolution_high 1.650 _reflns.d_resolution_low 50.000 _reflns.number_obs 19225 _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_netI_over_sigmaI 23.800 _reflns.pdbx_chi_squared 2.365 _reflns.pdbx_redundancy 4.000 _reflns.percent_possible_obs 98.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.650 1.680 ? ? ? 0.174 ? ? 1.057 2.300 ? 924 94.300 1 1 1.680 1.710 ? ? ? 0.158 ? ? 1.056 2.600 ? 906 95.800 2 1 1.710 1.740 ? ? ? 0.142 ? ? 1.323 2.700 ? 936 96.000 3 1 1.740 1.780 ? ? ? 0.132 ? ? 1.177 2.800 ? 933 97.200 4 1 1.780 1.820 ? ? ? 0.119 ? ? 1.173 2.800 ? 942 97.100 5 1 1.820 1.860 ? ? ? 0.109 ? ? 1.205 2.900 ? 963 99.500 6 1 1.860 1.900 ? ? ? 0.103 ? ? 1.096 3.000 ? 946 97.600 7 1 1.900 1.960 ? ? ? 0.094 ? ? 1.342 3.000 ? 961 99.400 8 1 1.960 2.010 ? ? ? 0.090 ? ? 1.440 3.200 ? 964 98.900 9 1 2.010 2.080 ? ? ? 0.083 ? ? 1.516 3.300 ? 966 98.900 10 1 2.080 2.150 ? ? ? 0.083 ? ? 1.433 3.400 ? 963 100.000 11 1 2.150 2.240 ? ? ? 0.080 ? ? 1.659 3.500 ? 962 99.300 12 1 2.240 2.340 ? ? ? 0.114 ? ? 2.771 4.000 ? 965 100.000 13 1 2.340 2.460 ? ? ? 0.110 ? ? 2.719 4.300 ? 974 100.000 14 1 2.460 2.620 ? ? ? 0.106 ? ? 2.917 4.500 ? 981 100.000 15 1 2.620 2.820 ? ? ? 0.118 ? ? 3.225 4.700 ? 967 100.000 16 1 2.820 3.110 ? ? ? 0.127 ? ? 3.447 5.200 ? 992 99.900 17 1 3.110 3.550 ? ? ? 0.149 ? ? 4.363 6.400 ? 973 100.000 18 1 3.550 4.480 ? ? ? 0.121 ? ? 3.283 7.100 ? 989 99.900 19 1 4.480 50.000 ? ? ? 0.074 ? ? 1.609 6.900 ? 1018 98.700 20 1 # _refine.entry_id 3S6M _refine.ls_d_res_high 1.6510 _refine.ls_d_res_low 23.2800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.5200 _refine.ls_number_reflns_obs 19200 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1485 _refine.ls_R_factor_R_work 0.1467 _refine.ls_wR_factor_R_work 0.1595 _refine.ls_R_factor_R_free 0.1827 _refine.ls_wR_factor_R_free 0.2021 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 978 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.5407 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.1100 _refine.aniso_B[2][2] -0.1100 _refine.aniso_B[3][3] 0.1600 _refine.aniso_B[1][2] -0.0500 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9680 _refine.correlation_coeff_Fo_to_Fc_free 0.9580 _refine.overall_SU_R_Cruickshank_DPI 0.0839 _refine.overall_SU_R_free 0.0865 _refine.pdbx_overall_ESU_R_Free 0.0870 _refine.overall_SU_ML 0.0450 _refine.overall_SU_B 2.8510 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 2NUL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9053 _refine.B_iso_max 53.910 _refine.B_iso_min 5.150 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.084 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1244 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 156 _refine_hist.number_atoms_total 1418 _refine_hist.d_res_high 1.6510 _refine_hist.d_res_low 23.2800 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1303 0.012 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 856 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1766 1.375 1.942 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2110 0.904 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 167 5.740 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 62 30.823 26.290 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 205 11.899 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 2 27.253 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 195 0.084 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1468 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 237 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 817 0.759 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 337 0.217 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1321 1.387 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 486 2.284 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 442 3.930 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.6510 _refine_ls_shell.d_res_low 1.6940 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.5600 _refine_ls_shell.number_reflns_R_work 1298 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1870 _refine_ls_shell.R_factor_R_free 0.1930 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1355 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3S6M _struct.title 'The structure of a Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3S6M _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'Seattle Structural Genomics Center for Infectious Disease, SSGCID, Peptidyl-prolyl cis-trans isomerase, ISOMERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 24 ? GLY A 38 ? ALA A 20 GLY A 34 1 ? 15 HELX_P HELX_P2 2 GLU A 75 ? GLY A 79 ? GLU A 71 GLY A 75 5 ? 5 HELX_P HELX_P3 3 ASN A 109 ? ASN A 113 ? ASN A 105 ASN A 109 5 ? 5 HELX_P HELX_P4 4 GLY A 133 ? LYS A 141 ? GLY A 129 LYS A 137 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 43 ? ILE A 44 ? THR A 39 ILE A 40 A 2 VAL A 160 ? VAL A 167 ? VAL A 156 VAL A 163 A 3 MET A 5 ? THR A 10 ? MET A 1 THR A 6 A 4 GLY A 13 ? LEU A 19 ? GLY A 9 LEU A 15 A 5 VAL A 126 ? GLU A 132 ? VAL A 122 GLU A 128 A 6 THR A 86 ? MET A 89 ? THR A 82 MET A 85 A 7 PHE A 102 ? ASN A 105 ? PHE A 98 ASN A 101 A 8 MET A 53 ? GLY A 56 ? MET A 49 GLY A 52 A 9 ARG A 47 ? ILE A 49 ? ARG A 43 ILE A 45 B 1 PHE A 59 ? GLU A 60 ? PHE A 55 GLU A 56 B 2 LYS A 64 ? GLN A 65 ? LYS A 60 GLN A 61 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 43 ? N THR A 39 O ILE A 161 ? O ILE A 157 A 2 3 O LYS A 163 ? O LYS A 159 N HIS A 9 ? N HIS A 5 A 3 4 N VAL A 6 ? N VAL A 2 O LEU A 17 ? O LEU A 13 A 4 5 N LYS A 16 ? N LYS A 12 O GLU A 132 ? O GLU A 128 A 5 6 O PHE A 127 ? O PHE A 123 N ILE A 87 ? N ILE A 83 A 6 7 N ALA A 88 ? N ALA A 84 O PHE A 103 ? O PHE A 99 A 7 8 O ILE A 104 ? O ILE A 100 N ILE A 54 ? N ILE A 50 A 8 9 O GLN A 55 ? O GLN A 51 N ARG A 47 ? N ARG A 43 B 1 2 N GLU A 60 ? N GLU A 56 O LYS A 64 ? O LYS A 60 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 164 ? 5 'BINDING SITE FOR RESIDUE EDO A 164' AC2 Software A PEG 165 ? 4 'BINDING SITE FOR RESIDUE PEG A 165' AC3 Software A PEG 166 ? 5 'BINDING SITE FOR RESIDUE PEG A 166' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 47 ? ARG A 43 . ? 1_555 ? 2 AC1 5 GLN A 55 ? GLN A 51 . ? 1_555 ? 3 AC1 5 PHE A 103 ? PHE A 99 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH A 216 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 233 . ? 1_555 ? 6 AC2 4 GLU A 18 ? GLU A 14 . ? 1_555 ? 7 AC2 4 ASP A 20 ? ASP A 16 . ? 1_555 ? 8 AC2 4 GLY A 128 ? GLY A 124 . ? 1_555 ? 9 AC2 4 HOH E . ? HOH A 277 . ? 1_555 ? 10 AC3 5 GLU A 7 ? GLU A 3 . ? 6_554 ? 11 AC3 5 HIS A 9 ? HIS A 5 . ? 6_554 ? 12 AC3 5 VAL A 14 ? VAL A 10 . ? 6_554 ? 13 AC3 5 ASN A 77 ? ASN A 73 . ? 1_555 ? 14 AC3 5 HOH E . ? HOH A 286 . ? 1_555 ? # _atom_sites.entry_id 3S6M _atom_sites.fract_transf_matrix[1][1] 0.012398 _atom_sites.fract_transf_matrix[1][2] 0.007158 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014316 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023074 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 -2 PRO PRO A . n A 1 3 GLY 3 -1 -1 GLY GLY A . n A 1 4 SER 4 0 0 SER SER A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 VAL 6 2 2 VAL VAL A . n A 1 7 GLU 7 3 3 GLU GLU A . n A 1 8 LEU 8 4 4 LEU LEU A . n A 1 9 HIS 9 5 5 HIS HIS A . n A 1 10 THR 10 6 6 THR THR A . n A 1 11 ASN 11 7 7 ASN ASN A . n A 1 12 HIS 12 8 8 HIS HIS A . n A 1 13 GLY 13 9 9 GLY GLY A . n A 1 14 VAL 14 10 10 VAL VAL A . n A 1 15 ILE 15 11 11 ILE ILE A . n A 1 16 LYS 16 12 12 LYS LYS A . n A 1 17 LEU 17 13 13 LEU LEU A . n A 1 18 GLU 18 14 14 GLU GLU A . n A 1 19 LEU 19 15 15 LEU LEU A . n A 1 20 ASP 20 16 16 ASP ASP A . n A 1 21 GLU 21 17 17 GLU GLU A . n A 1 22 ALA 22 18 18 ALA ALA A . n A 1 23 LYS 23 19 19 LYS LYS A . n A 1 24 ALA 24 20 20 ALA ALA A . n A 1 25 PRO 25 21 21 PRO PRO A . n A 1 26 LYS 26 22 22 LYS LYS A . n A 1 27 THR 27 23 23 THR THR A . n A 1 28 VAL 28 24 24 VAL VAL A . n A 1 29 GLU 29 25 25 GLU GLU A . n A 1 30 ASN 30 26 26 ASN ASN A . n A 1 31 PHE 31 27 27 PHE PHE A . n A 1 32 LEU 32 28 28 LEU LEU A . n A 1 33 ASN 33 29 29 ASN ASN A . n A 1 34 TYR 34 30 30 TYR TYR A . n A 1 35 VAL 35 31 31 VAL VAL A . n A 1 36 LYS 36 32 32 LYS LYS A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 GLY 38 34 34 GLY GLY A . n A 1 39 HIS 39 35 35 HIS HIS A . n A 1 40 TYR 40 36 36 TYR TYR A . n A 1 41 ASP 41 37 37 ASP ASP A . n A 1 42 GLY 42 38 38 GLY GLY A . n A 1 43 THR 43 39 39 THR THR A . n A 1 44 ILE 44 40 40 ILE ILE A . n A 1 45 PHE 45 41 41 PHE PHE A . n A 1 46 HIS 46 42 42 HIS HIS A . n A 1 47 ARG 47 43 43 ARG ARG A . n A 1 48 VAL 48 44 44 VAL VAL A . n A 1 49 ILE 49 45 45 ILE ILE A . n A 1 50 ASN 50 46 46 ASN ASN A . n A 1 51 GLY 51 47 47 GLY GLY A . n A 1 52 PHE 52 48 48 PHE PHE A . n A 1 53 MET 53 49 49 MET MET A . n A 1 54 ILE 54 50 50 ILE ILE A . n A 1 55 GLN 55 51 51 GLN GLN A . n A 1 56 GLY 56 52 52 GLY GLY A . n A 1 57 GLY 57 53 53 GLY GLY A . n A 1 58 GLY 58 54 54 GLY GLY A . n A 1 59 PHE 59 55 55 PHE PHE A . n A 1 60 GLU 60 56 56 GLU GLU A . n A 1 61 PRO 61 57 57 PRO PRO A . n A 1 62 GLY 62 58 58 GLY GLY A . n A 1 63 LEU 63 59 59 LEU LEU A . n A 1 64 LYS 64 60 60 LYS LYS A . n A 1 65 GLN 65 61 61 GLN GLN A . n A 1 66 LYS 66 62 62 LYS LYS A . n A 1 67 PRO 67 63 63 PRO PRO A . n A 1 68 THR 68 64 64 THR THR A . n A 1 69 ASP 69 65 65 ASP ASP A . n A 1 70 ALA 70 66 66 ALA ALA A . n A 1 71 PRO 71 67 67 PRO PRO A . n A 1 72 ILE 72 68 68 ILE ILE A . n A 1 73 ALA 73 69 69 ALA ALA A . n A 1 74 ASN 74 70 70 ASN ASN A . n A 1 75 GLU 75 71 71 GLU GLU A . n A 1 76 ALA 76 72 72 ALA ALA A . n A 1 77 ASN 77 73 73 ASN ASN A . n A 1 78 ASN 78 74 74 ASN ASN A . n A 1 79 GLY 79 75 75 GLY GLY A . n A 1 80 LEU 80 76 76 LEU LEU A . n A 1 81 LYS 81 77 77 LYS LYS A . n A 1 82 ASN 82 78 78 ASN ASN A . n A 1 83 ASP 83 79 79 ASP ASP A . n A 1 84 THR 84 80 80 THR THR A . n A 1 85 TYR 85 81 81 TYR TYR A . n A 1 86 THR 86 82 82 THR THR A . n A 1 87 ILE 87 83 83 ILE ILE A . n A 1 88 ALA 88 84 84 ALA ALA A . n A 1 89 MET 89 85 85 MET MET A . n A 1 90 ALA 90 86 86 ALA ALA A . n A 1 91 ARG 91 87 87 ARG ARG A . n A 1 92 THR 92 88 88 THR THR A . n A 1 93 ASN 93 89 89 ASN ASN A . n A 1 94 ASP 94 90 90 ASP ASP A . n A 1 95 PRO 95 91 91 PRO PRO A . n A 1 96 HIS 96 92 92 HIS HIS A . n A 1 97 SER 97 93 93 SER SER A . n A 1 98 ALA 98 94 94 ALA ALA A . n A 1 99 THR 99 95 95 THR THR A . n A 1 100 ALA 100 96 96 ALA ALA A . n A 1 101 GLN 101 97 97 GLN GLN A . n A 1 102 PHE 102 98 98 PHE PHE A . n A 1 103 PHE 103 99 99 PHE PHE A . n A 1 104 ILE 104 100 100 ILE ILE A . n A 1 105 ASN 105 101 101 ASN ASN A . n A 1 106 VAL 106 102 102 VAL VAL A . n A 1 107 ASN 107 103 103 ASN ASN A . n A 1 108 ASP 108 104 104 ASP ASP A . n A 1 109 ASN 109 105 105 ASN ASN A . n A 1 110 GLU 110 106 106 GLU GLU A . n A 1 111 PHE 111 107 107 PHE PHE A . n A 1 112 LEU 112 108 108 LEU LEU A . n A 1 113 ASN 113 109 109 ASN ASN A . n A 1 114 HIS 114 110 110 HIS HIS A . n A 1 115 SER 115 111 111 SER SER A . n A 1 116 SER 116 112 112 SER SER A . n A 1 117 PRO 117 113 113 PRO PRO A . n A 1 118 THR 118 114 114 THR THR A . n A 1 119 PRO 119 115 115 PRO PRO A . n A 1 120 GLN 120 116 116 GLN GLN A . n A 1 121 GLY 121 117 117 GLY GLY A . n A 1 122 TRP 122 118 118 TRP TRP A . n A 1 123 GLY 123 119 119 GLY GLY A . n A 1 124 TYR 124 120 120 TYR TYR A . n A 1 125 ALA 125 121 121 ALA ALA A . n A 1 126 VAL 126 122 122 VAL VAL A . n A 1 127 PHE 127 123 123 PHE PHE A . n A 1 128 GLY 128 124 124 GLY GLY A . n A 1 129 LYS 129 125 125 LYS LYS A . n A 1 130 VAL 130 126 126 VAL VAL A . n A 1 131 VAL 131 127 127 VAL VAL A . n A 1 132 GLU 132 128 128 GLU GLU A . n A 1 133 GLY 133 129 129 GLY GLY A . n A 1 134 GLN 134 130 130 GLN GLN A . n A 1 135 ASP 135 131 131 ASP ASP A . n A 1 136 ILE 136 132 132 ILE ILE A . n A 1 137 VAL 137 133 133 VAL VAL A . n A 1 138 ASP 138 134 134 ASP ASP A . n A 1 139 LYS 139 135 135 LYS LYS A . n A 1 140 ILE 140 136 136 ILE ILE A . n A 1 141 LYS 141 137 137 LYS LYS A . n A 1 142 ALA 142 138 138 ALA ALA A . n A 1 143 VAL 143 139 139 VAL VAL A . n A 1 144 LYS 144 140 140 LYS LYS A . n A 1 145 THR 145 141 141 THR THR A . n A 1 146 GLY 146 142 142 GLY GLY A . n A 1 147 SER 147 143 143 SER SER A . n A 1 148 LYS 148 144 ? ? ? A . n A 1 149 GLY 149 145 ? ? ? A . n A 1 150 PHE 150 146 ? ? ? A . n A 1 151 HIS 151 147 147 HIS HIS A . n A 1 152 GLN 152 148 148 GLN GLN A . n A 1 153 ASP 153 149 149 ASP ASP A . n A 1 154 VAL 154 150 150 VAL VAL A . n A 1 155 PRO 155 151 151 PRO PRO A . n A 1 156 ASN 156 152 152 ASN ASN A . n A 1 157 ASP 157 153 153 ASP ASP A . n A 1 158 ASP 158 154 154 ASP ASP A . n A 1 159 VAL 159 155 155 VAL VAL A . n A 1 160 VAL 160 156 156 VAL VAL A . n A 1 161 ILE 161 157 157 ILE ILE A . n A 1 162 GLU 162 158 158 GLU GLU A . n A 1 163 LYS 163 159 159 LYS LYS A . n A 1 164 ALA 164 160 160 ALA ALA A . n A 1 165 VAL 165 161 161 VAL VAL A . n A 1 166 VAL 166 162 162 VAL VAL A . n A 1 167 VAL 167 163 163 VAL VAL A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 164 1 EDO EDO A . C 3 PEG 1 165 1 PEG PEG A . D 3 PEG 1 166 1 PEG PEG A . E 4 HOH 1 167 1 HOH HOH A . E 4 HOH 2 168 168 HOH HOH A . E 4 HOH 3 169 169 HOH HOH A . E 4 HOH 4 170 170 HOH HOH A . E 4 HOH 5 171 171 HOH HOH A . E 4 HOH 6 172 172 HOH HOH A . E 4 HOH 7 173 173 HOH HOH A . E 4 HOH 8 174 174 HOH HOH A . E 4 HOH 9 175 175 HOH HOH A . E 4 HOH 10 176 176 HOH HOH A . E 4 HOH 11 177 177 HOH HOH A . E 4 HOH 12 178 178 HOH HOH A . E 4 HOH 13 179 2 HOH HOH A . E 4 HOH 14 180 180 HOH HOH A . E 4 HOH 15 181 181 HOH HOH A . E 4 HOH 16 182 3 HOH HOH A . E 4 HOH 17 183 4 HOH HOH A . E 4 HOH 18 184 184 HOH HOH A . E 4 HOH 19 185 185 HOH HOH A . E 4 HOH 20 186 5 HOH HOH A . E 4 HOH 21 187 187 HOH HOH A . E 4 HOH 22 188 6 HOH HOH A . E 4 HOH 23 189 189 HOH HOH A . E 4 HOH 24 190 190 HOH HOH A . E 4 HOH 25 191 191 HOH HOH A . E 4 HOH 26 192 192 HOH HOH A . E 4 HOH 27 193 193 HOH HOH A . E 4 HOH 28 194 7 HOH HOH A . E 4 HOH 29 195 8 HOH HOH A . E 4 HOH 30 196 196 HOH HOH A . E 4 HOH 31 197 197 HOH HOH A . E 4 HOH 32 198 198 HOH HOH A . E 4 HOH 33 199 199 HOH HOH A . E 4 HOH 34 200 200 HOH HOH A . E 4 HOH 35 201 201 HOH HOH A . E 4 HOH 36 202 202 HOH HOH A . E 4 HOH 37 203 203 HOH HOH A . E 4 HOH 38 204 204 HOH HOH A . E 4 HOH 39 205 9 HOH HOH A . E 4 HOH 40 206 10 HOH HOH A . E 4 HOH 41 207 12 HOH HOH A . E 4 HOH 42 208 13 HOH HOH A . E 4 HOH 43 209 14 HOH HOH A . E 4 HOH 44 210 15 HOH HOH A . E 4 HOH 45 211 16 HOH HOH A . E 4 HOH 46 212 17 HOH HOH A . E 4 HOH 47 213 18 HOH HOH A . E 4 HOH 48 214 19 HOH HOH A . E 4 HOH 49 215 20 HOH HOH A . E 4 HOH 50 216 21 HOH HOH A . E 4 HOH 51 217 22 HOH HOH A . E 4 HOH 52 218 23 HOH HOH A . E 4 HOH 53 219 24 HOH HOH A . E 4 HOH 54 220 25 HOH HOH A . E 4 HOH 55 221 26 HOH HOH A . E 4 HOH 56 222 27 HOH HOH A . E 4 HOH 57 223 28 HOH HOH A . E 4 HOH 58 224 29 HOH HOH A . E 4 HOH 59 225 30 HOH HOH A . E 4 HOH 60 226 31 HOH HOH A . E 4 HOH 61 227 32 HOH HOH A . E 4 HOH 62 228 34 HOH HOH A . E 4 HOH 63 229 35 HOH HOH A . E 4 HOH 64 230 37 HOH HOH A . E 4 HOH 65 231 38 HOH HOH A . E 4 HOH 66 232 40 HOH HOH A . E 4 HOH 67 233 43 HOH HOH A . E 4 HOH 68 234 45 HOH HOH A . E 4 HOH 69 235 46 HOH HOH A . E 4 HOH 70 236 47 HOH HOH A . E 4 HOH 71 237 48 HOH HOH A . E 4 HOH 72 238 49 HOH HOH A . E 4 HOH 73 239 50 HOH HOH A . E 4 HOH 74 240 51 HOH HOH A . E 4 HOH 75 241 52 HOH HOH A . E 4 HOH 76 242 53 HOH HOH A . E 4 HOH 77 243 55 HOH HOH A . E 4 HOH 78 244 57 HOH HOH A . E 4 HOH 79 245 58 HOH HOH A . E 4 HOH 80 246 59 HOH HOH A . E 4 HOH 81 247 60 HOH HOH A . E 4 HOH 82 248 62 HOH HOH A . E 4 HOH 83 249 65 HOH HOH A . E 4 HOH 84 250 66 HOH HOH A . E 4 HOH 85 251 67 HOH HOH A . E 4 HOH 86 252 68 HOH HOH A . E 4 HOH 87 253 69 HOH HOH A . E 4 HOH 88 254 70 HOH HOH A . E 4 HOH 89 255 71 HOH HOH A . E 4 HOH 90 256 72 HOH HOH A . E 4 HOH 91 257 73 HOH HOH A . E 4 HOH 92 258 74 HOH HOH A . E 4 HOH 93 259 76 HOH HOH A . E 4 HOH 94 260 77 HOH HOH A . E 4 HOH 95 261 78 HOH HOH A . E 4 HOH 96 262 79 HOH HOH A . E 4 HOH 97 263 81 HOH HOH A . E 4 HOH 98 264 82 HOH HOH A . E 4 HOH 99 265 83 HOH HOH A . E 4 HOH 100 266 84 HOH HOH A . E 4 HOH 101 267 86 HOH HOH A . E 4 HOH 102 268 87 HOH HOH A . E 4 HOH 103 269 88 HOH HOH A . E 4 HOH 104 270 89 HOH HOH A . E 4 HOH 105 271 90 HOH HOH A . E 4 HOH 106 272 92 HOH HOH A . E 4 HOH 107 273 93 HOH HOH A . E 4 HOH 108 274 94 HOH HOH A . E 4 HOH 109 275 96 HOH HOH A . E 4 HOH 110 276 97 HOH HOH A . E 4 HOH 111 277 98 HOH HOH A . E 4 HOH 112 278 100 HOH HOH A . E 4 HOH 113 279 101 HOH HOH A . E 4 HOH 114 280 103 HOH HOH A . E 4 HOH 115 281 104 HOH HOH A . E 4 HOH 116 282 105 HOH HOH A . E 4 HOH 117 283 107 HOH HOH A . E 4 HOH 118 284 108 HOH HOH A . E 4 HOH 119 285 109 HOH HOH A . E 4 HOH 120 286 110 HOH HOH A . E 4 HOH 121 287 111 HOH HOH A . E 4 HOH 122 288 112 HOH HOH A . E 4 HOH 123 289 114 HOH HOH A . E 4 HOH 124 290 115 HOH HOH A . E 4 HOH 125 291 116 HOH HOH A . E 4 HOH 126 292 117 HOH HOH A . E 4 HOH 127 293 118 HOH HOH A . E 4 HOH 128 294 119 HOH HOH A . E 4 HOH 129 295 120 HOH HOH A . E 4 HOH 130 296 121 HOH HOH A . E 4 HOH 131 297 123 HOH HOH A . E 4 HOH 132 298 124 HOH HOH A . E 4 HOH 133 299 126 HOH HOH A . E 4 HOH 134 300 128 HOH HOH A . E 4 HOH 135 301 129 HOH HOH A . E 4 HOH 136 302 130 HOH HOH A . E 4 HOH 137 303 131 HOH HOH A . E 4 HOH 138 304 133 HOH HOH A . E 4 HOH 139 305 136 HOH HOH A . E 4 HOH 140 306 137 HOH HOH A . E 4 HOH 141 307 139 HOH HOH A . E 4 HOH 142 308 140 HOH HOH A . E 4 HOH 143 309 143 HOH HOH A . E 4 HOH 144 310 144 HOH HOH A . E 4 HOH 145 311 146 HOH HOH A . E 4 HOH 146 312 147 HOH HOH A . E 4 HOH 147 313 148 HOH HOH A . E 4 HOH 148 314 149 HOH HOH A . E 4 HOH 149 315 152 HOH HOH A . E 4 HOH 150 316 153 HOH HOH A . E 4 HOH 151 317 154 HOH HOH A . E 4 HOH 152 318 155 HOH HOH A . E 4 HOH 153 319 161 HOH HOH A . E 4 HOH 154 320 162 HOH HOH A . E 4 HOH 155 321 164 HOH HOH A . E 4 HOH 156 322 166 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ref_seq_dif.details' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 6.3107 _pdbx_refine_tls.origin_y 29.0866 _pdbx_refine_tls.origin_z 5.3101 _pdbx_refine_tls.T[1][1] 0.0029 _pdbx_refine_tls.T[2][2] 0.0126 _pdbx_refine_tls.T[3][3] 0.0140 _pdbx_refine_tls.T[1][2] -0.0038 _pdbx_refine_tls.T[1][3] -0.0037 _pdbx_refine_tls.T[2][3] 0.0036 _pdbx_refine_tls.L[1][1] 1.3721 _pdbx_refine_tls.L[2][2] 0.2806 _pdbx_refine_tls.L[3][3] 0.8273 _pdbx_refine_tls.L[1][2] 0.0959 _pdbx_refine_tls.L[1][3] 0.8472 _pdbx_refine_tls.L[2][3] 0.0800 _pdbx_refine_tls.S[1][1] 0.0431 _pdbx_refine_tls.S[2][2] -0.0095 _pdbx_refine_tls.S[3][3] -0.0336 _pdbx_refine_tls.S[1][2] -0.0158 _pdbx_refine_tls.S[1][3] -0.0390 _pdbx_refine_tls.S[2][3] 0.0135 _pdbx_refine_tls.S[2][1] -0.0049 _pdbx_refine_tls.S[3][1] 0.0151 _pdbx_refine_tls.S[3][2] 0.0019 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -2 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 163 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MR.entry_id 3S6M _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 46.350 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 23.280 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 23.280 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 48 ? ? -135.56 -80.45 2 1 THR A 95 ? ? -127.25 -94.54 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 125 ? CG ? A LYS 129 CG 2 1 Y 1 A LYS 125 ? CD ? A LYS 129 CD 3 1 Y 1 A LYS 125 ? CE ? A LYS 129 CE 4 1 Y 1 A LYS 125 ? NZ ? A LYS 129 NZ 5 1 Y 1 A LYS 140 ? CG ? A LYS 144 CG 6 1 Y 1 A LYS 140 ? CD ? A LYS 144 CD 7 1 Y 1 A LYS 140 ? CE ? A LYS 144 CE 8 1 Y 1 A LYS 140 ? NZ ? A LYS 144 NZ 9 1 Y 1 A HIS 147 ? CG ? A HIS 151 CG 10 1 Y 1 A HIS 147 ? ND1 ? A HIS 151 ND1 11 1 Y 1 A HIS 147 ? CD2 ? A HIS 151 CD2 12 1 Y 1 A HIS 147 ? CE1 ? A HIS 151 CE1 13 1 Y 1 A HIS 147 ? NE2 ? A HIS 151 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A LYS 144 ? A LYS 148 3 1 Y 1 A GLY 145 ? A GLY 149 4 1 Y 1 A PHE 146 ? A PHE 150 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 EDO C1 C N N 74 EDO O1 O N N 75 EDO C2 C N N 76 EDO O2 O N N 77 EDO H11 H N N 78 EDO H12 H N N 79 EDO HO1 H N N 80 EDO H21 H N N 81 EDO H22 H N N 82 EDO HO2 H N N 83 GLN N N N N 84 GLN CA C N S 85 GLN C C N N 86 GLN O O N N 87 GLN CB C N N 88 GLN CG C N N 89 GLN CD C N N 90 GLN OE1 O N N 91 GLN NE2 N N N 92 GLN OXT O N N 93 GLN H H N N 94 GLN H2 H N N 95 GLN HA H N N 96 GLN HB2 H N N 97 GLN HB3 H N N 98 GLN HG2 H N N 99 GLN HG3 H N N 100 GLN HE21 H N N 101 GLN HE22 H N N 102 GLN HXT H N N 103 GLU N N N N 104 GLU CA C N S 105 GLU C C N N 106 GLU O O N N 107 GLU CB C N N 108 GLU CG C N N 109 GLU CD C N N 110 GLU OE1 O N N 111 GLU OE2 O N N 112 GLU OXT O N N 113 GLU H H N N 114 GLU H2 H N N 115 GLU HA H N N 116 GLU HB2 H N N 117 GLU HB3 H N N 118 GLU HG2 H N N 119 GLU HG3 H N N 120 GLU HE2 H N N 121 GLU HXT H N N 122 GLY N N N N 123 GLY CA C N N 124 GLY C C N N 125 GLY O O N N 126 GLY OXT O N N 127 GLY H H N N 128 GLY H2 H N N 129 GLY HA2 H N N 130 GLY HA3 H N N 131 GLY HXT H N N 132 HIS N N N N 133 HIS CA C N S 134 HIS C C N N 135 HIS O O N N 136 HIS CB C N N 137 HIS CG C Y N 138 HIS ND1 N Y N 139 HIS CD2 C Y N 140 HIS CE1 C Y N 141 HIS NE2 N Y N 142 HIS OXT O N N 143 HIS H H N N 144 HIS H2 H N N 145 HIS HA H N N 146 HIS HB2 H N N 147 HIS HB3 H N N 148 HIS HD1 H N N 149 HIS HD2 H N N 150 HIS HE1 H N N 151 HIS HE2 H N N 152 HIS HXT H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 ILE N N N N 157 ILE CA C N S 158 ILE C C N N 159 ILE O O N N 160 ILE CB C N S 161 ILE CG1 C N N 162 ILE CG2 C N N 163 ILE CD1 C N N 164 ILE OXT O N N 165 ILE H H N N 166 ILE H2 H N N 167 ILE HA H N N 168 ILE HB H N N 169 ILE HG12 H N N 170 ILE HG13 H N N 171 ILE HG21 H N N 172 ILE HG22 H N N 173 ILE HG23 H N N 174 ILE HD11 H N N 175 ILE HD12 H N N 176 ILE HD13 H N N 177 ILE HXT H N N 178 LEU N N N N 179 LEU CA C N S 180 LEU C C N N 181 LEU O O N N 182 LEU CB C N N 183 LEU CG C N N 184 LEU CD1 C N N 185 LEU CD2 C N N 186 LEU OXT O N N 187 LEU H H N N 188 LEU H2 H N N 189 LEU HA H N N 190 LEU HB2 H N N 191 LEU HB3 H N N 192 LEU HG H N N 193 LEU HD11 H N N 194 LEU HD12 H N N 195 LEU HD13 H N N 196 LEU HD21 H N N 197 LEU HD22 H N N 198 LEU HD23 H N N 199 LEU HXT H N N 200 LYS N N N N 201 LYS CA C N S 202 LYS C C N N 203 LYS O O N N 204 LYS CB C N N 205 LYS CG C N N 206 LYS CD C N N 207 LYS CE C N N 208 LYS NZ N N N 209 LYS OXT O N N 210 LYS H H N N 211 LYS H2 H N N 212 LYS HA H N N 213 LYS HB2 H N N 214 LYS HB3 H N N 215 LYS HG2 H N N 216 LYS HG3 H N N 217 LYS HD2 H N N 218 LYS HD3 H N N 219 LYS HE2 H N N 220 LYS HE3 H N N 221 LYS HZ1 H N N 222 LYS HZ2 H N N 223 LYS HZ3 H N N 224 LYS HXT H N N 225 MET N N N N 226 MET CA C N S 227 MET C C N N 228 MET O O N N 229 MET CB C N N 230 MET CG C N N 231 MET SD S N N 232 MET CE C N N 233 MET OXT O N N 234 MET H H N N 235 MET H2 H N N 236 MET HA H N N 237 MET HB2 H N N 238 MET HB3 H N N 239 MET HG2 H N N 240 MET HG3 H N N 241 MET HE1 H N N 242 MET HE2 H N N 243 MET HE3 H N N 244 MET HXT H N N 245 PEG C1 C N N 246 PEG O1 O N N 247 PEG C2 C N N 248 PEG O2 O N N 249 PEG C3 C N N 250 PEG C4 C N N 251 PEG O4 O N N 252 PEG H11 H N N 253 PEG H12 H N N 254 PEG HO1 H N N 255 PEG H21 H N N 256 PEG H22 H N N 257 PEG H31 H N N 258 PEG H32 H N N 259 PEG H41 H N N 260 PEG H42 H N N 261 PEG HO4 H N N 262 PHE N N N N 263 PHE CA C N S 264 PHE C C N N 265 PHE O O N N 266 PHE CB C N N 267 PHE CG C Y N 268 PHE CD1 C Y N 269 PHE CD2 C Y N 270 PHE CE1 C Y N 271 PHE CE2 C Y N 272 PHE CZ C Y N 273 PHE OXT O N N 274 PHE H H N N 275 PHE H2 H N N 276 PHE HA H N N 277 PHE HB2 H N N 278 PHE HB3 H N N 279 PHE HD1 H N N 280 PHE HD2 H N N 281 PHE HE1 H N N 282 PHE HE2 H N N 283 PHE HZ H N N 284 PHE HXT H N N 285 PRO N N N N 286 PRO CA C N S 287 PRO C C N N 288 PRO O O N N 289 PRO CB C N N 290 PRO CG C N N 291 PRO CD C N N 292 PRO OXT O N N 293 PRO H H N N 294 PRO HA H N N 295 PRO HB2 H N N 296 PRO HB3 H N N 297 PRO HG2 H N N 298 PRO HG3 H N N 299 PRO HD2 H N N 300 PRO HD3 H N N 301 PRO HXT H N N 302 SER N N N N 303 SER CA C N S 304 SER C C N N 305 SER O O N N 306 SER CB C N N 307 SER OG O N N 308 SER OXT O N N 309 SER H H N N 310 SER H2 H N N 311 SER HA H N N 312 SER HB2 H N N 313 SER HB3 H N N 314 SER HG H N N 315 SER HXT H N N 316 THR N N N N 317 THR CA C N S 318 THR C C N N 319 THR O O N N 320 THR CB C N R 321 THR OG1 O N N 322 THR CG2 C N N 323 THR OXT O N N 324 THR H H N N 325 THR H2 H N N 326 THR HA H N N 327 THR HB H N N 328 THR HG1 H N N 329 THR HG21 H N N 330 THR HG22 H N N 331 THR HG23 H N N 332 THR HXT H N N 333 TRP N N N N 334 TRP CA C N S 335 TRP C C N N 336 TRP O O N N 337 TRP CB C N N 338 TRP CG C Y N 339 TRP CD1 C Y N 340 TRP CD2 C Y N 341 TRP NE1 N Y N 342 TRP CE2 C Y N 343 TRP CE3 C Y N 344 TRP CZ2 C Y N 345 TRP CZ3 C Y N 346 TRP CH2 C Y N 347 TRP OXT O N N 348 TRP H H N N 349 TRP H2 H N N 350 TRP HA H N N 351 TRP HB2 H N N 352 TRP HB3 H N N 353 TRP HD1 H N N 354 TRP HE1 H N N 355 TRP HE3 H N N 356 TRP HZ2 H N N 357 TRP HZ3 H N N 358 TRP HH2 H N N 359 TRP HXT H N N 360 TYR N N N N 361 TYR CA C N S 362 TYR C C N N 363 TYR O O N N 364 TYR CB C N N 365 TYR CG C Y N 366 TYR CD1 C Y N 367 TYR CD2 C Y N 368 TYR CE1 C Y N 369 TYR CE2 C Y N 370 TYR CZ C Y N 371 TYR OH O N N 372 TYR OXT O N N 373 TYR H H N N 374 TYR H2 H N N 375 TYR HA H N N 376 TYR HB2 H N N 377 TYR HB3 H N N 378 TYR HD1 H N N 379 TYR HD2 H N N 380 TYR HE1 H N N 381 TYR HE2 H N N 382 TYR HH H N N 383 TYR HXT H N N 384 VAL N N N N 385 VAL CA C N S 386 VAL C C N N 387 VAL O O N N 388 VAL CB C N N 389 VAL CG1 C N N 390 VAL CG2 C N N 391 VAL OXT O N N 392 VAL H H N N 393 VAL H2 H N N 394 VAL HA H N N 395 VAL HB H N N 396 VAL HG11 H N N 397 VAL HG12 H N N 398 VAL HG13 H N N 399 VAL HG21 H N N 400 VAL HG22 H N N 401 VAL HG23 H N N 402 VAL HXT H N N 403 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 EDO C1 O1 sing N N 70 EDO C1 C2 sing N N 71 EDO C1 H11 sing N N 72 EDO C1 H12 sing N N 73 EDO O1 HO1 sing N N 74 EDO C2 O2 sing N N 75 EDO C2 H21 sing N N 76 EDO C2 H22 sing N N 77 EDO O2 HO2 sing N N 78 GLN N CA sing N N 79 GLN N H sing N N 80 GLN N H2 sing N N 81 GLN CA C sing N N 82 GLN CA CB sing N N 83 GLN CA HA sing N N 84 GLN C O doub N N 85 GLN C OXT sing N N 86 GLN CB CG sing N N 87 GLN CB HB2 sing N N 88 GLN CB HB3 sing N N 89 GLN CG CD sing N N 90 GLN CG HG2 sing N N 91 GLN CG HG3 sing N N 92 GLN CD OE1 doub N N 93 GLN CD NE2 sing N N 94 GLN NE2 HE21 sing N N 95 GLN NE2 HE22 sing N N 96 GLN OXT HXT sing N N 97 GLU N CA sing N N 98 GLU N H sing N N 99 GLU N H2 sing N N 100 GLU CA C sing N N 101 GLU CA CB sing N N 102 GLU CA HA sing N N 103 GLU C O doub N N 104 GLU C OXT sing N N 105 GLU CB CG sing N N 106 GLU CB HB2 sing N N 107 GLU CB HB3 sing N N 108 GLU CG CD sing N N 109 GLU CG HG2 sing N N 110 GLU CG HG3 sing N N 111 GLU CD OE1 doub N N 112 GLU CD OE2 sing N N 113 GLU OE2 HE2 sing N N 114 GLU OXT HXT sing N N 115 GLY N CA sing N N 116 GLY N H sing N N 117 GLY N H2 sing N N 118 GLY CA C sing N N 119 GLY CA HA2 sing N N 120 GLY CA HA3 sing N N 121 GLY C O doub N N 122 GLY C OXT sing N N 123 GLY OXT HXT sing N N 124 HIS N CA sing N N 125 HIS N H sing N N 126 HIS N H2 sing N N 127 HIS CA C sing N N 128 HIS CA CB sing N N 129 HIS CA HA sing N N 130 HIS C O doub N N 131 HIS C OXT sing N N 132 HIS CB CG sing N N 133 HIS CB HB2 sing N N 134 HIS CB HB3 sing N N 135 HIS CG ND1 sing Y N 136 HIS CG CD2 doub Y N 137 HIS ND1 CE1 doub Y N 138 HIS ND1 HD1 sing N N 139 HIS CD2 NE2 sing Y N 140 HIS CD2 HD2 sing N N 141 HIS CE1 NE2 sing Y N 142 HIS CE1 HE1 sing N N 143 HIS NE2 HE2 sing N N 144 HIS OXT HXT sing N N 145 HOH O H1 sing N N 146 HOH O H2 sing N N 147 ILE N CA sing N N 148 ILE N H sing N N 149 ILE N H2 sing N N 150 ILE CA C sing N N 151 ILE CA CB sing N N 152 ILE CA HA sing N N 153 ILE C O doub N N 154 ILE C OXT sing N N 155 ILE CB CG1 sing N N 156 ILE CB CG2 sing N N 157 ILE CB HB sing N N 158 ILE CG1 CD1 sing N N 159 ILE CG1 HG12 sing N N 160 ILE CG1 HG13 sing N N 161 ILE CG2 HG21 sing N N 162 ILE CG2 HG22 sing N N 163 ILE CG2 HG23 sing N N 164 ILE CD1 HD11 sing N N 165 ILE CD1 HD12 sing N N 166 ILE CD1 HD13 sing N N 167 ILE OXT HXT sing N N 168 LEU N CA sing N N 169 LEU N H sing N N 170 LEU N H2 sing N N 171 LEU CA C sing N N 172 LEU CA CB sing N N 173 LEU CA HA sing N N 174 LEU C O doub N N 175 LEU C OXT sing N N 176 LEU CB CG sing N N 177 LEU CB HB2 sing N N 178 LEU CB HB3 sing N N 179 LEU CG CD1 sing N N 180 LEU CG CD2 sing N N 181 LEU CG HG sing N N 182 LEU CD1 HD11 sing N N 183 LEU CD1 HD12 sing N N 184 LEU CD1 HD13 sing N N 185 LEU CD2 HD21 sing N N 186 LEU CD2 HD22 sing N N 187 LEU CD2 HD23 sing N N 188 LEU OXT HXT sing N N 189 LYS N CA sing N N 190 LYS N H sing N N 191 LYS N H2 sing N N 192 LYS CA C sing N N 193 LYS CA CB sing N N 194 LYS CA HA sing N N 195 LYS C O doub N N 196 LYS C OXT sing N N 197 LYS CB CG sing N N 198 LYS CB HB2 sing N N 199 LYS CB HB3 sing N N 200 LYS CG CD sing N N 201 LYS CG HG2 sing N N 202 LYS CG HG3 sing N N 203 LYS CD CE sing N N 204 LYS CD HD2 sing N N 205 LYS CD HD3 sing N N 206 LYS CE NZ sing N N 207 LYS CE HE2 sing N N 208 LYS CE HE3 sing N N 209 LYS NZ HZ1 sing N N 210 LYS NZ HZ2 sing N N 211 LYS NZ HZ3 sing N N 212 LYS OXT HXT sing N N 213 MET N CA sing N N 214 MET N H sing N N 215 MET N H2 sing N N 216 MET CA C sing N N 217 MET CA CB sing N N 218 MET CA HA sing N N 219 MET C O doub N N 220 MET C OXT sing N N 221 MET CB CG sing N N 222 MET CB HB2 sing N N 223 MET CB HB3 sing N N 224 MET CG SD sing N N 225 MET CG HG2 sing N N 226 MET CG HG3 sing N N 227 MET SD CE sing N N 228 MET CE HE1 sing N N 229 MET CE HE2 sing N N 230 MET CE HE3 sing N N 231 MET OXT HXT sing N N 232 PEG C1 O1 sing N N 233 PEG C1 C2 sing N N 234 PEG C1 H11 sing N N 235 PEG C1 H12 sing N N 236 PEG O1 HO1 sing N N 237 PEG C2 O2 sing N N 238 PEG C2 H21 sing N N 239 PEG C2 H22 sing N N 240 PEG O2 C3 sing N N 241 PEG C3 C4 sing N N 242 PEG C3 H31 sing N N 243 PEG C3 H32 sing N N 244 PEG C4 O4 sing N N 245 PEG C4 H41 sing N N 246 PEG C4 H42 sing N N 247 PEG O4 HO4 sing N N 248 PHE N CA sing N N 249 PHE N H sing N N 250 PHE N H2 sing N N 251 PHE CA C sing N N 252 PHE CA CB sing N N 253 PHE CA HA sing N N 254 PHE C O doub N N 255 PHE C OXT sing N N 256 PHE CB CG sing N N 257 PHE CB HB2 sing N N 258 PHE CB HB3 sing N N 259 PHE CG CD1 doub Y N 260 PHE CG CD2 sing Y N 261 PHE CD1 CE1 sing Y N 262 PHE CD1 HD1 sing N N 263 PHE CD2 CE2 doub Y N 264 PHE CD2 HD2 sing N N 265 PHE CE1 CZ doub Y N 266 PHE CE1 HE1 sing N N 267 PHE CE2 CZ sing Y N 268 PHE CE2 HE2 sing N N 269 PHE CZ HZ sing N N 270 PHE OXT HXT sing N N 271 PRO N CA sing N N 272 PRO N CD sing N N 273 PRO N H sing N N 274 PRO CA C sing N N 275 PRO CA CB sing N N 276 PRO CA HA sing N N 277 PRO C O doub N N 278 PRO C OXT sing N N 279 PRO CB CG sing N N 280 PRO CB HB2 sing N N 281 PRO CB HB3 sing N N 282 PRO CG CD sing N N 283 PRO CG HG2 sing N N 284 PRO CG HG3 sing N N 285 PRO CD HD2 sing N N 286 PRO CD HD3 sing N N 287 PRO OXT HXT sing N N 288 SER N CA sing N N 289 SER N H sing N N 290 SER N H2 sing N N 291 SER CA C sing N N 292 SER CA CB sing N N 293 SER CA HA sing N N 294 SER C O doub N N 295 SER C OXT sing N N 296 SER CB OG sing N N 297 SER CB HB2 sing N N 298 SER CB HB3 sing N N 299 SER OG HG sing N N 300 SER OXT HXT sing N N 301 THR N CA sing N N 302 THR N H sing N N 303 THR N H2 sing N N 304 THR CA C sing N N 305 THR CA CB sing N N 306 THR CA HA sing N N 307 THR C O doub N N 308 THR C OXT sing N N 309 THR CB OG1 sing N N 310 THR CB CG2 sing N N 311 THR CB HB sing N N 312 THR OG1 HG1 sing N N 313 THR CG2 HG21 sing N N 314 THR CG2 HG22 sing N N 315 THR CG2 HG23 sing N N 316 THR OXT HXT sing N N 317 TRP N CA sing N N 318 TRP N H sing N N 319 TRP N H2 sing N N 320 TRP CA C sing N N 321 TRP CA CB sing N N 322 TRP CA HA sing N N 323 TRP C O doub N N 324 TRP C OXT sing N N 325 TRP CB CG sing N N 326 TRP CB HB2 sing N N 327 TRP CB HB3 sing N N 328 TRP CG CD1 doub Y N 329 TRP CG CD2 sing Y N 330 TRP CD1 NE1 sing Y N 331 TRP CD1 HD1 sing N N 332 TRP CD2 CE2 doub Y N 333 TRP CD2 CE3 sing Y N 334 TRP NE1 CE2 sing Y N 335 TRP NE1 HE1 sing N N 336 TRP CE2 CZ2 sing Y N 337 TRP CE3 CZ3 doub Y N 338 TRP CE3 HE3 sing N N 339 TRP CZ2 CH2 doub Y N 340 TRP CZ2 HZ2 sing N N 341 TRP CZ3 CH2 sing Y N 342 TRP CZ3 HZ3 sing N N 343 TRP CH2 HH2 sing N N 344 TRP OXT HXT sing N N 345 TYR N CA sing N N 346 TYR N H sing N N 347 TYR N H2 sing N N 348 TYR CA C sing N N 349 TYR CA CB sing N N 350 TYR CA HA sing N N 351 TYR C O doub N N 352 TYR C OXT sing N N 353 TYR CB CG sing N N 354 TYR CB HB2 sing N N 355 TYR CB HB3 sing N N 356 TYR CG CD1 doub Y N 357 TYR CG CD2 sing Y N 358 TYR CD1 CE1 sing Y N 359 TYR CD1 HD1 sing N N 360 TYR CD2 CE2 doub Y N 361 TYR CD2 HD2 sing N N 362 TYR CE1 CZ doub Y N 363 TYR CE1 HE1 sing N N 364 TYR CE2 CZ sing Y N 365 TYR CE2 HE2 sing N N 366 TYR CZ OH sing N N 367 TYR OH HH sing N N 368 TYR OXT HXT sing N N 369 VAL N CA sing N N 370 VAL N H sing N N 371 VAL N H2 sing N N 372 VAL CA C sing N N 373 VAL CA CB sing N N 374 VAL CA HA sing N N 375 VAL C O doub N N 376 VAL C OXT sing N N 377 VAL CB CG1 sing N N 378 VAL CB CG2 sing N N 379 VAL CB HB sing N N 380 VAL CG1 HG11 sing N N 381 VAL CG1 HG12 sing N N 382 VAL CG1 HG13 sing N N 383 VAL CG2 HG21 sing N N 384 VAL CG2 HG22 sing N N 385 VAL CG2 HG23 sing N N 386 VAL OXT HXT sing N N 387 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'DI(HYDROXYETHYL)ETHER' PEG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2NUL _pdbx_initial_refinement_model.details 'PDB ENTRY 2NUL' #