data_3S6W # _entry.id 3S6W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3S6W pdb_00003s6w 10.2210/pdb3s6w/pdb RCSB RCSB065836 ? ? WWPDB D_1000065836 ? ? # _pdbx_database_status.entry_id 3S6W _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-05-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, H.P.' 1 'Xu, R.M.' 2 # _citation.id primary _citation.title 'Crystal structure of TDRD3 and methyl-arginine binding characterization of TDRD3, SMN and SPF30' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e30375 _citation.page_last e30375 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22363433 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0030375 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, K.' 1 ? primary 'Guo, Y.H.' 2 ? primary 'Liu, H.P.' 3 ? primary 'Bian, C.B.' 4 ? primary 'Lam, R.' 5 ? primary 'Liu, Y.' 6 ? primary 'Mackenzie, F.' 7 ? primary 'Rojas, L.A.' 8 ? primary 'Reinberg, D.' 9 ? primary 'Bedford, M.T.' 10 ? primary 'Xu, R.M.' 11 ? primary 'Min, J.R.' 12 ? # _cell.entry_id 3S6W _cell.length_a 41.930 _cell.length_b 41.930 _cell.length_c 61.478 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3S6W _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tudor domain-containing protein 3' 6325.160 1 ? ? 'Tudor domain' ? 2 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 2 ? ? ? ? 3 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI _entity_poly.pdbx_seq_one_letter_code_can MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 TRP n 1 3 LYS n 1 4 PRO n 1 5 GLY n 1 6 ASP n 1 7 GLU n 1 8 CYS n 1 9 PHE n 1 10 ALA n 1 11 LEU n 1 12 TYR n 1 13 TRP n 1 14 GLU n 1 15 ASP n 1 16 ASN n 1 17 LYS n 1 18 PHE n 1 19 TYR n 1 20 ARG n 1 21 ALA n 1 22 GLU n 1 23 VAL n 1 24 GLU n 1 25 ALA n 1 26 LEU n 1 27 HIS n 1 28 SER n 1 29 SER n 1 30 GLY n 1 31 MET n 1 32 THR n 1 33 ALA n 1 34 VAL n 1 35 VAL n 1 36 LYS n 1 37 PHE n 1 38 ILE n 1 39 ASP n 1 40 TYR n 1 41 GLY n 1 42 ASN n 1 43 TYR n 1 44 GLU n 1 45 GLU n 1 46 VAL n 1 47 LEU n 1 48 LEU n 1 49 SER n 1 50 ASN n 1 51 ILE n 1 52 LYS n 1 53 PRO n 1 54 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TDRD3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rossetta Gami' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-4T-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TDRD3_HUMAN _struct_ref.pdbx_db_accession Q9H7E2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI _struct_ref.pdbx_align_begin 555 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3S6W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 54 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9H7E2 _struct_ref_seq.db_align_beg 555 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 608 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 555 _struct_ref_seq.pdbx_auth_seq_align_end 608 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3S6W _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 50.13 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '10% 2-propanol, 100mM Phosphate-Citrate, 0.2M Li2SO4, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2008-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3S6W _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.78 _reflns.d_resolution_low 36.31 _reflns.number_all ? _reflns.number_obs 5836 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_rejects _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.78 1.84 ? 100 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 1 1.84 1.92 ? 99.8 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 # _refine.entry_id 3S6W _refine.ls_d_res_high 1.7800 _refine.ls_d_res_low 36.3100 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.3800 _refine.ls_number_reflns_obs 5573 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_obs 0.18397 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18291 _refine.ls_R_factor_R_free 0.20618 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.5000 _refine.ls_number_reflns_R_free 263 _refine.ls_R_factor_R_free_error ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 15.579 _refine.aniso_B[1][1] 0.27 _refine.aniso_B[2][2] 0.27 _refine.aniso_B[3][3] -0.40 _refine.aniso_B[1][2] 0.13 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.pdbx_overall_ESU_R 0.128 _refine.pdbx_overall_ESU_R_Free 0.114 _refine.overall_SU_ML 0.069 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.208 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_starting_model 1MHN _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 428 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 503 _refine_hist.d_res_high 1.7800 _refine_hist.d_res_low 36.3100 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 463 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.138 1.962 ? 629 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.389 5.000 ? 55 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.518 25.217 ? 23 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.534 15.000 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 41.335 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.075 0.200 ? 66 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 350 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.733 1.500 ? 266 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.364 2.000 ? 430 'X-RAY DIFFRACTION' ? r_scbond_it 1.833 3.000 ? 197 'X-RAY DIFFRACTION' ? r_scangle_it 3.003 4.500 ? 196 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.7790 _refine_ls_shell.d_res_low 1.8250 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 440 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.241 _refine_ls_shell.R_factor_R_free 0.329 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 10 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 450 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3S6W _struct.title 'Crystal structure of Tudor domain of human TDRD3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3S6W _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Tudor, methylated arginine recognize, iso-propanol, Transcription' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 43 ? LEU A 47 ? TYR A 597 LEU A 601 A 2 THR A 32 ? PHE A 37 ? THR A 586 PHE A 591 A 3 LYS A 17 ? ALA A 25 ? LYS A 571 ALA A 579 A 4 GLU A 7 ? TYR A 12 ? GLU A 561 TYR A 566 A 5 ILE A 51 ? LYS A 52 ? ILE A 605 LYS A 606 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 46 ? O VAL A 600 N ALA A 33 ? N ALA A 587 A 2 3 O VAL A 34 ? O VAL A 588 N GLU A 24 ? N GLU A 578 A 3 4 O LYS A 17 ? O LYS A 571 N TYR A 12 ? N TYR A 566 A 4 5 N PHE A 9 ? N PHE A 563 O LYS A 52 ? O LYS A 606 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IPA 1 ? 7 'BINDING SITE FOR RESIDUE IPA A 1' AC2 Software A IPA 609 ? 6 'BINDING SITE FOR RESIDUE IPA A 609' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH D . ? HOH A 26 . ? 5_555 ? 2 AC1 7 HOH D . ? HOH A 73 . ? 5_555 ? 3 AC1 7 PHE A 9 ? PHE A 563 . ? 1_555 ? 4 AC1 7 PHE A 18 ? PHE A 572 . ? 1_555 ? 5 AC1 7 VAL A 34 ? VAL A 588 . ? 5_555 ? 6 AC1 7 TYR A 43 ? TYR A 597 . ? 5_555 ? 7 AC1 7 LYS A 52 ? LYS A 606 . ? 1_555 ? 8 AC2 6 TYR A 12 ? TYR A 566 . ? 1_555 ? 9 AC2 6 LYS A 17 ? LYS A 571 . ? 6_554 ? 10 AC2 6 TYR A 19 ? TYR A 573 . ? 1_555 ? 11 AC2 6 PHE A 37 ? PHE A 591 . ? 1_555 ? 12 AC2 6 TYR A 40 ? TYR A 594 . ? 1_555 ? 13 AC2 6 ASN A 42 ? ASN A 596 . ? 1_555 ? # _atom_sites.entry_id 3S6W _atom_sites.fract_transf_matrix[1][1] 0.023849 _atom_sites.fract_transf_matrix[1][2] 0.013769 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027539 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016266 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 555 555 MET MET A . n A 1 2 TRP 2 556 556 TRP TRP A . n A 1 3 LYS 3 557 557 LYS LYS A . n A 1 4 PRO 4 558 558 PRO PRO A . n A 1 5 GLY 5 559 559 GLY GLY A . n A 1 6 ASP 6 560 560 ASP ASP A . n A 1 7 GLU 7 561 561 GLU GLU A . n A 1 8 CYS 8 562 562 CYS CYS A . n A 1 9 PHE 9 563 563 PHE PHE A . n A 1 10 ALA 10 564 564 ALA ALA A . n A 1 11 LEU 11 565 565 LEU LEU A . n A 1 12 TYR 12 566 566 TYR TYR A . n A 1 13 TRP 13 567 567 TRP TRP A . n A 1 14 GLU 14 568 568 GLU GLU A . n A 1 15 ASP 15 569 569 ASP ASP A . n A 1 16 ASN 16 570 570 ASN ASN A . n A 1 17 LYS 17 571 571 LYS LYS A . n A 1 18 PHE 18 572 572 PHE PHE A . n A 1 19 TYR 19 573 573 TYR TYR A . n A 1 20 ARG 20 574 574 ARG ARG A . n A 1 21 ALA 21 575 575 ALA ALA A . n A 1 22 GLU 22 576 576 GLU GLU A . n A 1 23 VAL 23 577 577 VAL VAL A . n A 1 24 GLU 24 578 578 GLU GLU A . n A 1 25 ALA 25 579 579 ALA ALA A . n A 1 26 LEU 26 580 580 LEU LEU A . n A 1 27 HIS 27 581 ? ? ? A . n A 1 28 SER 28 582 ? ? ? A . n A 1 29 SER 29 583 583 SER SER A . n A 1 30 GLY 30 584 584 GLY GLY A . n A 1 31 MET 31 585 585 MET MET A . n A 1 32 THR 32 586 586 THR THR A . n A 1 33 ALA 33 587 587 ALA ALA A . n A 1 34 VAL 34 588 588 VAL VAL A . n A 1 35 VAL 35 589 589 VAL VAL A . n A 1 36 LYS 36 590 590 LYS LYS A . n A 1 37 PHE 37 591 591 PHE PHE A . n A 1 38 ILE 38 592 592 ILE ILE A . n A 1 39 ASP 39 593 593 ASP ASP A . n A 1 40 TYR 40 594 594 TYR TYR A . n A 1 41 GLY 41 595 595 GLY GLY A . n A 1 42 ASN 42 596 596 ASN ASN A . n A 1 43 TYR 43 597 597 TYR TYR A . n A 1 44 GLU 44 598 598 GLU GLU A . n A 1 45 GLU 45 599 599 GLU GLU A . n A 1 46 VAL 46 600 600 VAL VAL A . n A 1 47 LEU 47 601 601 LEU LEU A . n A 1 48 LEU 48 602 602 LEU LEU A . n A 1 49 SER 49 603 603 SER SER A . n A 1 50 ASN 50 604 604 ASN ASN A . n A 1 51 ILE 51 605 605 ILE ILE A . n A 1 52 LYS 52 606 606 LYS LYS A . n A 1 53 PRO 53 607 607 PRO PRO A . n A 1 54 ILE 54 608 608 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPA 1 1 1 IPA IPA A . C 2 IPA 1 609 1 IPA IPA A . D 3 HOH 1 2 2 HOH HOH A . D 3 HOH 2 3 3 HOH HOH A . D 3 HOH 3 4 4 HOH HOH A . D 3 HOH 4 5 5 HOH HOH A . D 3 HOH 5 6 6 HOH HOH A . D 3 HOH 6 8 8 HOH HOH A . D 3 HOH 7 9 9 HOH HOH A . D 3 HOH 8 10 10 HOH HOH A . D 3 HOH 9 11 11 HOH HOH A . D 3 HOH 10 12 12 HOH HOH A . D 3 HOH 11 13 13 HOH HOH A . D 3 HOH 12 15 15 HOH HOH A . D 3 HOH 13 16 16 HOH HOH A . D 3 HOH 14 17 17 HOH HOH A . D 3 HOH 15 18 18 HOH HOH A . D 3 HOH 16 19 19 HOH HOH A . D 3 HOH 17 20 20 HOH HOH A . D 3 HOH 18 22 22 HOH HOH A . D 3 HOH 19 23 23 HOH HOH A . D 3 HOH 20 24 24 HOH HOH A . D 3 HOH 21 25 25 HOH HOH A . D 3 HOH 22 26 26 HOH HOH A . D 3 HOH 23 27 27 HOH HOH A . D 3 HOH 24 28 28 HOH HOH A . D 3 HOH 25 29 29 HOH HOH A . D 3 HOH 26 30 30 HOH HOH A . D 3 HOH 27 31 31 HOH HOH A . D 3 HOH 28 32 32 HOH HOH A . D 3 HOH 29 33 33 HOH HOH A . D 3 HOH 30 34 34 HOH HOH A . D 3 HOH 31 35 35 HOH HOH A . D 3 HOH 32 36 36 HOH HOH A . D 3 HOH 33 37 37 HOH HOH A . D 3 HOH 34 38 38 HOH HOH A . D 3 HOH 35 39 39 HOH HOH A . D 3 HOH 36 40 40 HOH HOH A . D 3 HOH 37 41 41 HOH HOH A . D 3 HOH 38 42 42 HOH HOH A . D 3 HOH 39 43 43 HOH HOH A . D 3 HOH 40 45 45 HOH HOH A . D 3 HOH 41 47 47 HOH HOH A . D 3 HOH 42 49 49 HOH HOH A . D 3 HOH 43 50 50 HOH HOH A . D 3 HOH 44 51 51 HOH HOH A . D 3 HOH 45 52 52 HOH HOH A . D 3 HOH 46 54 54 HOH HOH A . D 3 HOH 47 55 55 HOH HOH A . D 3 HOH 48 57 57 HOH HOH A . D 3 HOH 49 58 58 HOH HOH A . D 3 HOH 50 59 59 HOH HOH A . D 3 HOH 51 61 61 HOH HOH A . D 3 HOH 52 62 62 HOH HOH A . D 3 HOH 53 64 64 HOH HOH A . D 3 HOH 54 65 65 HOH HOH A . D 3 HOH 55 66 66 HOH HOH A . D 3 HOH 56 67 67 HOH HOH A . D 3 HOH 57 68 68 HOH HOH A . D 3 HOH 58 69 69 HOH HOH A . D 3 HOH 59 70 70 HOH HOH A . D 3 HOH 60 71 71 HOH HOH A . D 3 HOH 61 72 72 HOH HOH A . D 3 HOH 62 73 73 HOH HOH A . D 3 HOH 63 74 74 HOH HOH A . D 3 HOH 64 75 75 HOH HOH A . D 3 HOH 65 76 76 HOH HOH A . D 3 HOH 66 77 77 HOH HOH A . D 3 HOH 67 610 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-07 2 'Structure model' 1 1 2012-05-02 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 2 REFMAC 5.5.0072 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 d*TREK . ? ? ? ? 'data scaling' ? ? ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? 6 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 594 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -135.80 _pdbx_validate_torsion.psi -32.40 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id SER _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 583 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id OG _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id SER _pdbx_unobs_or_zero_occ_atoms.label_seq_id 29 _pdbx_unobs_or_zero_occ_atoms.label_atom_id OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 581 ? A HIS 27 2 1 Y 1 A SER 582 ? A SER 28 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLU N N N N 88 GLU CA C N S 89 GLU C C N N 90 GLU O O N N 91 GLU CB C N N 92 GLU CG C N N 93 GLU CD C N N 94 GLU OE1 O N N 95 GLU OE2 O N N 96 GLU OXT O N N 97 GLU H H N N 98 GLU H2 H N N 99 GLU HA H N N 100 GLU HB2 H N N 101 GLU HB3 H N N 102 GLU HG2 H N N 103 GLU HG3 H N N 104 GLU HE2 H N N 105 GLU HXT H N N 106 GLY N N N N 107 GLY CA C N N 108 GLY C C N N 109 GLY O O N N 110 GLY OXT O N N 111 GLY H H N N 112 GLY H2 H N N 113 GLY HA2 H N N 114 GLY HA3 H N N 115 GLY HXT H N N 116 HIS N N N N 117 HIS CA C N S 118 HIS C C N N 119 HIS O O N N 120 HIS CB C N N 121 HIS CG C Y N 122 HIS ND1 N Y N 123 HIS CD2 C Y N 124 HIS CE1 C Y N 125 HIS NE2 N Y N 126 HIS OXT O N N 127 HIS H H N N 128 HIS H2 H N N 129 HIS HA H N N 130 HIS HB2 H N N 131 HIS HB3 H N N 132 HIS HD1 H N N 133 HIS HD2 H N N 134 HIS HE1 H N N 135 HIS HE2 H N N 136 HIS HXT H N N 137 HOH O O N N 138 HOH H1 H N N 139 HOH H2 H N N 140 ILE N N N N 141 ILE CA C N S 142 ILE C C N N 143 ILE O O N N 144 ILE CB C N S 145 ILE CG1 C N N 146 ILE CG2 C N N 147 ILE CD1 C N N 148 ILE OXT O N N 149 ILE H H N N 150 ILE H2 H N N 151 ILE HA H N N 152 ILE HB H N N 153 ILE HG12 H N N 154 ILE HG13 H N N 155 ILE HG21 H N N 156 ILE HG22 H N N 157 ILE HG23 H N N 158 ILE HD11 H N N 159 ILE HD12 H N N 160 ILE HD13 H N N 161 ILE HXT H N N 162 IPA C1 C N N 163 IPA C2 C N N 164 IPA C3 C N N 165 IPA O2 O N N 166 IPA H11 H N N 167 IPA H12 H N N 168 IPA H13 H N N 169 IPA H2 H N N 170 IPA H31 H N N 171 IPA H32 H N N 172 IPA H33 H N N 173 IPA HO2 H N N 174 LEU N N N N 175 LEU CA C N S 176 LEU C C N N 177 LEU O O N N 178 LEU CB C N N 179 LEU CG C N N 180 LEU CD1 C N N 181 LEU CD2 C N N 182 LEU OXT O N N 183 LEU H H N N 184 LEU H2 H N N 185 LEU HA H N N 186 LEU HB2 H N N 187 LEU HB3 H N N 188 LEU HG H N N 189 LEU HD11 H N N 190 LEU HD12 H N N 191 LEU HD13 H N N 192 LEU HD21 H N N 193 LEU HD22 H N N 194 LEU HD23 H N N 195 LEU HXT H N N 196 LYS N N N N 197 LYS CA C N S 198 LYS C C N N 199 LYS O O N N 200 LYS CB C N N 201 LYS CG C N N 202 LYS CD C N N 203 LYS CE C N N 204 LYS NZ N N N 205 LYS OXT O N N 206 LYS H H N N 207 LYS H2 H N N 208 LYS HA H N N 209 LYS HB2 H N N 210 LYS HB3 H N N 211 LYS HG2 H N N 212 LYS HG3 H N N 213 LYS HD2 H N N 214 LYS HD3 H N N 215 LYS HE2 H N N 216 LYS HE3 H N N 217 LYS HZ1 H N N 218 LYS HZ2 H N N 219 LYS HZ3 H N N 220 LYS HXT H N N 221 MET N N N N 222 MET CA C N S 223 MET C C N N 224 MET O O N N 225 MET CB C N N 226 MET CG C N N 227 MET SD S N N 228 MET CE C N N 229 MET OXT O N N 230 MET H H N N 231 MET H2 H N N 232 MET HA H N N 233 MET HB2 H N N 234 MET HB3 H N N 235 MET HG2 H N N 236 MET HG3 H N N 237 MET HE1 H N N 238 MET HE2 H N N 239 MET HE3 H N N 240 MET HXT H N N 241 PHE N N N N 242 PHE CA C N S 243 PHE C C N N 244 PHE O O N N 245 PHE CB C N N 246 PHE CG C Y N 247 PHE CD1 C Y N 248 PHE CD2 C Y N 249 PHE CE1 C Y N 250 PHE CE2 C Y N 251 PHE CZ C Y N 252 PHE OXT O N N 253 PHE H H N N 254 PHE H2 H N N 255 PHE HA H N N 256 PHE HB2 H N N 257 PHE HB3 H N N 258 PHE HD1 H N N 259 PHE HD2 H N N 260 PHE HE1 H N N 261 PHE HE2 H N N 262 PHE HZ H N N 263 PHE HXT H N N 264 PRO N N N N 265 PRO CA C N S 266 PRO C C N N 267 PRO O O N N 268 PRO CB C N N 269 PRO CG C N N 270 PRO CD C N N 271 PRO OXT O N N 272 PRO H H N N 273 PRO HA H N N 274 PRO HB2 H N N 275 PRO HB3 H N N 276 PRO HG2 H N N 277 PRO HG3 H N N 278 PRO HD2 H N N 279 PRO HD3 H N N 280 PRO HXT H N N 281 SER N N N N 282 SER CA C N S 283 SER C C N N 284 SER O O N N 285 SER CB C N N 286 SER OG O N N 287 SER OXT O N N 288 SER H H N N 289 SER H2 H N N 290 SER HA H N N 291 SER HB2 H N N 292 SER HB3 H N N 293 SER HG H N N 294 SER HXT H N N 295 THR N N N N 296 THR CA C N S 297 THR C C N N 298 THR O O N N 299 THR CB C N R 300 THR OG1 O N N 301 THR CG2 C N N 302 THR OXT O N N 303 THR H H N N 304 THR H2 H N N 305 THR HA H N N 306 THR HB H N N 307 THR HG1 H N N 308 THR HG21 H N N 309 THR HG22 H N N 310 THR HG23 H N N 311 THR HXT H N N 312 TRP N N N N 313 TRP CA C N S 314 TRP C C N N 315 TRP O O N N 316 TRP CB C N N 317 TRP CG C Y N 318 TRP CD1 C Y N 319 TRP CD2 C Y N 320 TRP NE1 N Y N 321 TRP CE2 C Y N 322 TRP CE3 C Y N 323 TRP CZ2 C Y N 324 TRP CZ3 C Y N 325 TRP CH2 C Y N 326 TRP OXT O N N 327 TRP H H N N 328 TRP H2 H N N 329 TRP HA H N N 330 TRP HB2 H N N 331 TRP HB3 H N N 332 TRP HD1 H N N 333 TRP HE1 H N N 334 TRP HE3 H N N 335 TRP HZ2 H N N 336 TRP HZ3 H N N 337 TRP HH2 H N N 338 TRP HXT H N N 339 TYR N N N N 340 TYR CA C N S 341 TYR C C N N 342 TYR O O N N 343 TYR CB C N N 344 TYR CG C Y N 345 TYR CD1 C Y N 346 TYR CD2 C Y N 347 TYR CE1 C Y N 348 TYR CE2 C Y N 349 TYR CZ C Y N 350 TYR OH O N N 351 TYR OXT O N N 352 TYR H H N N 353 TYR H2 H N N 354 TYR HA H N N 355 TYR HB2 H N N 356 TYR HB3 H N N 357 TYR HD1 H N N 358 TYR HD2 H N N 359 TYR HE1 H N N 360 TYR HE2 H N N 361 TYR HH H N N 362 TYR HXT H N N 363 VAL N N N N 364 VAL CA C N S 365 VAL C C N N 366 VAL O O N N 367 VAL CB C N N 368 VAL CG1 C N N 369 VAL CG2 C N N 370 VAL OXT O N N 371 VAL H H N N 372 VAL H2 H N N 373 VAL HA H N N 374 VAL HB H N N 375 VAL HG11 H N N 376 VAL HG12 H N N 377 VAL HG13 H N N 378 VAL HG21 H N N 379 VAL HG22 H N N 380 VAL HG23 H N N 381 VAL HXT H N N 382 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 HIS N CA sing N N 110 HIS N H sing N N 111 HIS N H2 sing N N 112 HIS CA C sing N N 113 HIS CA CB sing N N 114 HIS CA HA sing N N 115 HIS C O doub N N 116 HIS C OXT sing N N 117 HIS CB CG sing N N 118 HIS CB HB2 sing N N 119 HIS CB HB3 sing N N 120 HIS CG ND1 sing Y N 121 HIS CG CD2 doub Y N 122 HIS ND1 CE1 doub Y N 123 HIS ND1 HD1 sing N N 124 HIS CD2 NE2 sing Y N 125 HIS CD2 HD2 sing N N 126 HIS CE1 NE2 sing Y N 127 HIS CE1 HE1 sing N N 128 HIS NE2 HE2 sing N N 129 HIS OXT HXT sing N N 130 HOH O H1 sing N N 131 HOH O H2 sing N N 132 ILE N CA sing N N 133 ILE N H sing N N 134 ILE N H2 sing N N 135 ILE CA C sing N N 136 ILE CA CB sing N N 137 ILE CA HA sing N N 138 ILE C O doub N N 139 ILE C OXT sing N N 140 ILE CB CG1 sing N N 141 ILE CB CG2 sing N N 142 ILE CB HB sing N N 143 ILE CG1 CD1 sing N N 144 ILE CG1 HG12 sing N N 145 ILE CG1 HG13 sing N N 146 ILE CG2 HG21 sing N N 147 ILE CG2 HG22 sing N N 148 ILE CG2 HG23 sing N N 149 ILE CD1 HD11 sing N N 150 ILE CD1 HD12 sing N N 151 ILE CD1 HD13 sing N N 152 ILE OXT HXT sing N N 153 IPA C1 C2 sing N N 154 IPA C1 H11 sing N N 155 IPA C1 H12 sing N N 156 IPA C1 H13 sing N N 157 IPA C2 C3 sing N N 158 IPA C2 O2 sing N N 159 IPA C2 H2 sing N N 160 IPA C3 H31 sing N N 161 IPA C3 H32 sing N N 162 IPA C3 H33 sing N N 163 IPA O2 HO2 sing N N 164 LEU N CA sing N N 165 LEU N H sing N N 166 LEU N H2 sing N N 167 LEU CA C sing N N 168 LEU CA CB sing N N 169 LEU CA HA sing N N 170 LEU C O doub N N 171 LEU C OXT sing N N 172 LEU CB CG sing N N 173 LEU CB HB2 sing N N 174 LEU CB HB3 sing N N 175 LEU CG CD1 sing N N 176 LEU CG CD2 sing N N 177 LEU CG HG sing N N 178 LEU CD1 HD11 sing N N 179 LEU CD1 HD12 sing N N 180 LEU CD1 HD13 sing N N 181 LEU CD2 HD21 sing N N 182 LEU CD2 HD22 sing N N 183 LEU CD2 HD23 sing N N 184 LEU OXT HXT sing N N 185 LYS N CA sing N N 186 LYS N H sing N N 187 LYS N H2 sing N N 188 LYS CA C sing N N 189 LYS CA CB sing N N 190 LYS CA HA sing N N 191 LYS C O doub N N 192 LYS C OXT sing N N 193 LYS CB CG sing N N 194 LYS CB HB2 sing N N 195 LYS CB HB3 sing N N 196 LYS CG CD sing N N 197 LYS CG HG2 sing N N 198 LYS CG HG3 sing N N 199 LYS CD CE sing N N 200 LYS CD HD2 sing N N 201 LYS CD HD3 sing N N 202 LYS CE NZ sing N N 203 LYS CE HE2 sing N N 204 LYS CE HE3 sing N N 205 LYS NZ HZ1 sing N N 206 LYS NZ HZ2 sing N N 207 LYS NZ HZ3 sing N N 208 LYS OXT HXT sing N N 209 MET N CA sing N N 210 MET N H sing N N 211 MET N H2 sing N N 212 MET CA C sing N N 213 MET CA CB sing N N 214 MET CA HA sing N N 215 MET C O doub N N 216 MET C OXT sing N N 217 MET CB CG sing N N 218 MET CB HB2 sing N N 219 MET CB HB3 sing N N 220 MET CG SD sing N N 221 MET CG HG2 sing N N 222 MET CG HG3 sing N N 223 MET SD CE sing N N 224 MET CE HE1 sing N N 225 MET CE HE2 sing N N 226 MET CE HE3 sing N N 227 MET OXT HXT sing N N 228 PHE N CA sing N N 229 PHE N H sing N N 230 PHE N H2 sing N N 231 PHE CA C sing N N 232 PHE CA CB sing N N 233 PHE CA HA sing N N 234 PHE C O doub N N 235 PHE C OXT sing N N 236 PHE CB CG sing N N 237 PHE CB HB2 sing N N 238 PHE CB HB3 sing N N 239 PHE CG CD1 doub Y N 240 PHE CG CD2 sing Y N 241 PHE CD1 CE1 sing Y N 242 PHE CD1 HD1 sing N N 243 PHE CD2 CE2 doub Y N 244 PHE CD2 HD2 sing N N 245 PHE CE1 CZ doub Y N 246 PHE CE1 HE1 sing N N 247 PHE CE2 CZ sing Y N 248 PHE CE2 HE2 sing N N 249 PHE CZ HZ sing N N 250 PHE OXT HXT sing N N 251 PRO N CA sing N N 252 PRO N CD sing N N 253 PRO N H sing N N 254 PRO CA C sing N N 255 PRO CA CB sing N N 256 PRO CA HA sing N N 257 PRO C O doub N N 258 PRO C OXT sing N N 259 PRO CB CG sing N N 260 PRO CB HB2 sing N N 261 PRO CB HB3 sing N N 262 PRO CG CD sing N N 263 PRO CG HG2 sing N N 264 PRO CG HG3 sing N N 265 PRO CD HD2 sing N N 266 PRO CD HD3 sing N N 267 PRO OXT HXT sing N N 268 SER N CA sing N N 269 SER N H sing N N 270 SER N H2 sing N N 271 SER CA C sing N N 272 SER CA CB sing N N 273 SER CA HA sing N N 274 SER C O doub N N 275 SER C OXT sing N N 276 SER CB OG sing N N 277 SER CB HB2 sing N N 278 SER CB HB3 sing N N 279 SER OG HG sing N N 280 SER OXT HXT sing N N 281 THR N CA sing N N 282 THR N H sing N N 283 THR N H2 sing N N 284 THR CA C sing N N 285 THR CA CB sing N N 286 THR CA HA sing N N 287 THR C O doub N N 288 THR C OXT sing N N 289 THR CB OG1 sing N N 290 THR CB CG2 sing N N 291 THR CB HB sing N N 292 THR OG1 HG1 sing N N 293 THR CG2 HG21 sing N N 294 THR CG2 HG22 sing N N 295 THR CG2 HG23 sing N N 296 THR OXT HXT sing N N 297 TRP N CA sing N N 298 TRP N H sing N N 299 TRP N H2 sing N N 300 TRP CA C sing N N 301 TRP CA CB sing N N 302 TRP CA HA sing N N 303 TRP C O doub N N 304 TRP C OXT sing N N 305 TRP CB CG sing N N 306 TRP CB HB2 sing N N 307 TRP CB HB3 sing N N 308 TRP CG CD1 doub Y N 309 TRP CG CD2 sing Y N 310 TRP CD1 NE1 sing Y N 311 TRP CD1 HD1 sing N N 312 TRP CD2 CE2 doub Y N 313 TRP CD2 CE3 sing Y N 314 TRP NE1 CE2 sing Y N 315 TRP NE1 HE1 sing N N 316 TRP CE2 CZ2 sing Y N 317 TRP CE3 CZ3 doub Y N 318 TRP CE3 HE3 sing N N 319 TRP CZ2 CH2 doub Y N 320 TRP CZ2 HZ2 sing N N 321 TRP CZ3 CH2 sing Y N 322 TRP CZ3 HZ3 sing N N 323 TRP CH2 HH2 sing N N 324 TRP OXT HXT sing N N 325 TYR N CA sing N N 326 TYR N H sing N N 327 TYR N H2 sing N N 328 TYR CA C sing N N 329 TYR CA CB sing N N 330 TYR CA HA sing N N 331 TYR C O doub N N 332 TYR C OXT sing N N 333 TYR CB CG sing N N 334 TYR CB HB2 sing N N 335 TYR CB HB3 sing N N 336 TYR CG CD1 doub Y N 337 TYR CG CD2 sing Y N 338 TYR CD1 CE1 sing Y N 339 TYR CD1 HD1 sing N N 340 TYR CD2 CE2 doub Y N 341 TYR CD2 HD2 sing N N 342 TYR CE1 CZ doub Y N 343 TYR CE1 HE1 sing N N 344 TYR CE2 CZ sing Y N 345 TYR CE2 HE2 sing N N 346 TYR CZ OH sing N N 347 TYR OH HH sing N N 348 TYR OXT HXT sing N N 349 VAL N CA sing N N 350 VAL N H sing N N 351 VAL N H2 sing N N 352 VAL CA C sing N N 353 VAL CA CB sing N N 354 VAL CA HA sing N N 355 VAL C O doub N N 356 VAL C OXT sing N N 357 VAL CB CG1 sing N N 358 VAL CB CG2 sing N N 359 VAL CB HB sing N N 360 VAL CG1 HG11 sing N N 361 VAL CG1 HG12 sing N N 362 VAL CG1 HG13 sing N N 363 VAL CG2 HG21 sing N N 364 VAL CG2 HG22 sing N N 365 VAL CG2 HG23 sing N N 366 VAL OXT HXT sing N N 367 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ISOPROPYL ALCOHOL' IPA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MHN _pdbx_initial_refinement_model.details ? #