HEADER FLUORESCENT PROTEIN 26-MAY-11 3S7N TITLE CRYSTAL STRUCTURE OF THE ALTERNATE HIS 207 CONFORMATION OF THE TITLE 2 INFRARED FLUORESCENT D207H VARIANT OF DEINOCOCCUS BACTERIOPHYTOCHROME TITLE 3 CHROMOPHORE BINDING DOMAIN AT 2.45 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CHROMOPHORE BINDING DOMAIN (UNP RESIDUES 1-321); COMPND 5 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: BPHP, DR_A0050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS BILIVERDIN, PAS, GAF, PHYTOCHROME, BACTERIOPHYTOCHROME, KEYWDS 2 PHOTORECEPTOR, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.E.AULDRIDGE,K.A.SATYSHUR,K.T.FOREST REVDAT 3 13-SEP-23 3S7N 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK REVDAT 2 28-NOV-12 3S7N 1 JRNL REVDAT 1 21-DEC-11 3S7N 0 JRNL AUTH M.E.AULDRIDGE,K.A.SATYSHUR,D.M.ANSTROM,K.T.FOREST JRNL TITL STRUCTURE-GUIDED ENGINEERING ENHANCES A PHYTOCHROME-BASED JRNL TITL 2 INFRARED FLUORESCENT PROTEIN. JRNL REF J.BIOL.CHEM. V. 287 7000 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22210774 JRNL DOI 10.1074/JBC.M111.295121 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 10904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 367 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.978 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.195 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.147 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2488 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1654 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3409 ; 1.245 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4009 ; 0.853 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;34.117 ;23.100 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;14.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2764 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 473 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1568 ; 0.876 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 623 ; 0.078 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2524 ; 1.616 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 920 ; 1.284 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 885 ; 2.348 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1370 -31.1860 32.3500 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.1292 REMARK 3 T33: 0.1527 T12: -0.0630 REMARK 3 T13: -0.0013 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 4.4438 L22: 5.9234 REMARK 3 L33: 9.6953 L12: -2.6932 REMARK 3 L13: -2.0651 L23: 1.9271 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: -0.1831 S13: -0.8429 REMARK 3 S21: 0.9038 S22: -0.3430 S23: 0.4042 REMARK 3 S31: 1.0585 S32: 0.0956 S33: 0.3545 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 60 REMARK 3 RESIDUE RANGE : A 330 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9100 -15.9930 27.1190 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.1981 REMARK 3 T33: 0.0504 T12: -0.0723 REMARK 3 T13: 0.0412 T23: -0.0770 REMARK 3 L TENSOR REMARK 3 L11: 2.1837 L22: 2.2023 REMARK 3 L33: 2.6625 L12: -0.7274 REMARK 3 L13: 0.0469 L23: 0.0273 REMARK 3 S TENSOR REMARK 3 S11: 0.1091 S12: -0.4476 S13: 0.0231 REMARK 3 S21: 0.2342 S22: -0.2358 S23: 0.2021 REMARK 3 S31: -0.0708 S32: -0.2873 S33: 0.1267 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8160 -5.0110 25.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.4804 T22: 0.2125 REMARK 3 T33: 0.4595 T12: 0.1752 REMARK 3 T13: 0.0106 T23: -0.3460 REMARK 3 L TENSOR REMARK 3 L11: -1.0371 L22: 8.8347 REMARK 3 L33: 0.1616 L12: -4.4854 REMARK 3 L13: -5.7366 L23: -0.6835 REMARK 3 S TENSOR REMARK 3 S11: 1.1099 S12: 0.4175 S13: 0.7164 REMARK 3 S21: 0.9049 S22: -0.7558 S23: 0.7530 REMARK 3 S31: -1.6360 S32: -0.2788 S33: -0.3541 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7890 -15.6220 16.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.3355 REMARK 3 T33: 0.1812 T12: -0.0264 REMARK 3 T13: -0.0680 T23: -0.1825 REMARK 3 L TENSOR REMARK 3 L11: 5.6265 L22: 8.0123 REMARK 3 L33: 6.1276 L12: 1.5567 REMARK 3 L13: -0.5010 L23: -1.4723 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: 0.1136 S13: 0.2441 REMARK 3 S21: -0.8058 S22: -0.3849 S23: 0.8893 REMARK 3 S31: 0.4957 S32: -1.2045 S33: 0.1218 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3170 -13.8630 11.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.1459 REMARK 3 T33: 0.2890 T12: 0.0605 REMARK 3 T13: 0.0009 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.9100 L22: 2.4991 REMARK 3 L33: 2.9996 L12: 0.6636 REMARK 3 L13: 1.4502 L23: 3.2454 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.1072 S13: 0.5165 REMARK 3 S21: -0.4892 S22: -0.2509 S23: 0.2165 REMARK 3 S31: -0.4783 S32: -0.2403 S33: 0.3373 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6000 -29.2730 -4.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.0657 T22: 0.0863 REMARK 3 T33: 0.0801 T12: 0.0154 REMARK 3 T13: -0.0434 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.3003 L22: 3.1308 REMARK 3 L33: 2.8289 L12: 1.0524 REMARK 3 L13: -0.2687 L23: 0.5135 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.3510 S13: 0.1228 REMARK 3 S21: -0.1532 S22: 0.0445 S23: 0.3259 REMARK 3 S31: -0.0272 S32: -0.0940 S33: -0.0399 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0390 -29.1490 11.1990 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.0716 REMARK 3 T33: 0.0721 T12: -0.0008 REMARK 3 T13: -0.0064 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.5481 L22: 1.5903 REMARK 3 L33: 1.3674 L12: 0.2366 REMARK 3 L13: -0.0247 L23: 0.6208 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: -0.1103 S13: -0.0621 REMARK 3 S21: 0.1191 S22: -0.0333 S23: -0.0585 REMARK 3 S31: 0.0866 S32: 0.1069 S33: 0.0164 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7220 -21.3740 24.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.0760 REMARK 3 T33: 0.0571 T12: -0.0544 REMARK 3 T13: 0.0071 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.3326 L22: 0.9761 REMARK 3 L33: 4.8831 L12: -0.7736 REMARK 3 L13: -1.7922 L23: 1.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.1999 S13: -0.1012 REMARK 3 S21: 0.3000 S22: -0.0905 S23: 0.0127 REMARK 3 S31: 0.2525 S32: -0.1367 S33: 0.0953 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 268 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1580 -26.4730 8.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.0538 REMARK 3 T33: 0.0698 T12: 0.0057 REMARK 3 T13: 0.0165 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.5242 L22: 4.4715 REMARK 3 L33: 1.0145 L12: 1.4712 REMARK 3 L13: 0.4656 L23: -0.4812 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.0988 S13: 0.0221 REMARK 3 S21: 0.1220 S22: -0.0177 S23: 0.2036 REMARK 3 S31: 0.0001 S32: -0.0442 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5770 -29.4340 2.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.1365 REMARK 3 T33: 0.1606 T12: 0.0033 REMARK 3 T13: -0.0118 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 3.8734 L22: 25.3649 REMARK 3 L33: 3.7589 L12: 6.7787 REMARK 3 L13: 3.9899 L23: 5.4443 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: 0.1626 S13: -0.2013 REMARK 3 S21: 0.2455 S22: 0.4343 S23: 0.5065 REMARK 3 S31: -0.0260 S32: 0.0680 S33: -0.3826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000065863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MONTEL 200 MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11526 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 37.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2O9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% V/V PEG 4000, 20% V/V ISOPROPANOL, REMARK 280 0.1M SODIUM CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.20650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.40400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.20650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.40400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 131 REMARK 465 TRP A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 31 56.21 -140.47 REMARK 500 PRO A 66 -9.53 -58.95 REMARK 500 LEU A 89 73.00 -115.60 REMARK 500 ALA A 182 -4.76 78.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LBV A 330 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O9C RELATED DB: PDB REMARK 900 DRCBD Y307S REMARK 900 RELATED ID: 1ZTU RELATED DB: PDB REMARK 900 SAME AS 2O9C BUT WITH A PRO TO THR SUBSTITUTION AT POSITION 240 AND REMARK 900 TYROSINE AT POSITION 307 REMARK 900 RELATED ID: 2O9B RELATED DB: PDB REMARK 900 SAME AS 2O9C AT LOWER RESOLUTION REMARK 900 RELATED ID: 3S7O RELATED DB: PDB REMARK 900 RELATED ID: 3S7P RELATED DB: PDB REMARK 900 RELATED ID: 3S7Q RELATED DB: PDB DBREF 3S7N A 1 321 UNP Q9RZA4 BPHY_DEIRA 1 321 SEQADV 3S7N MET A -13 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N ALA A -12 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N SER A -11 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N MET A -10 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N THR A -9 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N GLY A -8 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N GLY A -7 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N GLN A -6 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N GLN A -5 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N MET A -4 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N GLY A -3 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N ARG A -2 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N GLY A -1 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N SER A 0 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N HIS A 207 UNP Q9RZA4 ASP 207 ENGINEERED MUTATION SEQADV 3S7N SER A 307 UNP Q9RZA4 TYR 307 ENGINEERED MUTATION SEQADV 3S7N LEU A 322 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N GLU A 323 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N HIS A 324 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N HIS A 325 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N HIS A 326 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N HIS A 327 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N HIS A 328 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7N HIS A 329 UNP Q9RZA4 EXPRESSION TAG SEQRES 1 A 343 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 343 SER MET SER ARG ASP PRO LEU PRO PHE PHE PRO PRO LEU SEQRES 3 A 343 TYR LEU GLY GLY PRO GLU ILE THR THR GLU ASN CYS GLU SEQRES 4 A 343 ARG GLU PRO ILE HIS ILE PRO GLY SER ILE GLN PRO HIS SEQRES 5 A 343 GLY ALA LEU LEU THR ALA ASP GLY HIS SER GLY GLU VAL SEQRES 6 A 343 LEU GLN MET SER LEU ASN ALA ALA THR PHE LEU GLY GLN SEQRES 7 A 343 GLU PRO THR VAL LEU ARG GLY GLN THR LEU ALA ALA LEU SEQRES 8 A 343 LEU PRO GLU GLN TRP PRO ALA LEU GLN ALA ALA LEU PRO SEQRES 9 A 343 PRO GLY CYS PRO ASP ALA LEU GLN TYR ARG ALA THR LEU SEQRES 10 A 343 ASP TRP PRO ALA ALA GLY HIS LEU SER LEU THR VAL HIS SEQRES 11 A 343 ARG VAL GLY GLU LEU LEU ILE LEU GLU PHE GLU PRO THR SEQRES 12 A 343 GLU ALA TRP ASP SER THR GLY PRO HIS ALA LEU ARG ASN SEQRES 13 A 343 ALA MET PHE ALA LEU GLU SER ALA PRO ASN LEU ARG ALA SEQRES 14 A 343 LEU ALA GLU VAL ALA THR GLN THR VAL ARG GLU LEU THR SEQRES 15 A 343 GLY PHE ASP ARG VAL MET LEU TYR LYS PHE ALA PRO ASP SEQRES 16 A 343 ALA THR GLY GLU VAL ILE ALA GLU ALA ARG ARG GLU GLY SEQRES 17 A 343 LEU HIS ALA PHE LEU GLY HIS ARG PHE PRO ALA SER HIS SEQRES 18 A 343 ILE PRO ALA GLN ALA ARG ALA LEU TYR THR ARG HIS LEU SEQRES 19 A 343 LEU ARG LEU THR ALA ASP THR ARG ALA ALA ALA VAL PRO SEQRES 20 A 343 LEU ASP PRO VAL LEU ASN PRO GLN THR ASN ALA PRO THR SEQRES 21 A 343 PRO LEU GLY GLY ALA VAL LEU ARG ALA THR SER PRO MET SEQRES 22 A 343 HIS MET GLN TYR LEU ARG ASN MET GLY VAL GLY SER SER SEQRES 23 A 343 LEU SER VAL SER VAL VAL VAL GLY GLY GLN LEU TRP GLY SEQRES 24 A 343 LEU ILE ALA CYS HIS HIS GLN THR PRO TYR VAL LEU PRO SEQRES 25 A 343 PRO ASP LEU ARG THR THR LEU GLU SER LEU GLY ARG LEU SEQRES 26 A 343 LEU SER LEU GLN VAL GLN VAL LYS GLU ALA LEU GLU HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS HET LBV A 330 77 HETNAM LBV 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3- HETNAM 2 LBV METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4- HETNAM 3 LBV METHYL-PYRROL-1-IUM -2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3- HETNAM 4 LBV ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBV YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3- YL]PROPANOIC HETNAM 6 LBV ACID HETSYN LBV 2(R),3(E)- PHYTOCHROMOBILIN FORMUL 2 LBV C33 H37 N4 O6 1+ FORMUL 3 HOH *163(H2 O) HELIX 1 1 PRO A 11 GLY A 15 5 5 HELIX 2 2 ASN A 23 GLU A 27 5 5 HELIX 3 3 ASN A 57 GLY A 63 1 7 HELIX 4 4 THR A 73 LEU A 78 1 6 HELIX 5 5 GLN A 81 LEU A 89 1 9 HELIX 6 6 GLY A 136 ALA A 150 1 15 HELIX 7 7 ASN A 152 GLY A 169 1 18 HELIX 8 8 PRO A 204 ILE A 208 5 5 HELIX 9 9 PRO A 209 HIS A 219 1 11 HELIX 10 10 SER A 257 MET A 267 1 11 HELIX 11 11 PRO A 298 GLU A 323 1 26 SHEET 1 A 7 SER A 34 ILE A 35 0 SHEET 2 A 7 VAL A 232 ASP A 235 -1 O VAL A 232 N ILE A 35 SHEET 3 A 7 VAL A 51 SER A 55 -1 N MET A 54 O ASP A 235 SHEET 4 A 7 ALA A 40 ASP A 45 -1 N THR A 43 O LEU A 52 SHEET 5 A 7 LEU A 121 THR A 129 -1 O PHE A 126 N ALA A 40 SHEET 6 A 7 HIS A 110 VAL A 118 -1 N HIS A 116 O ILE A 123 SHEET 7 A 7 TYR A 99 ASP A 104 -1 N ALA A 101 O LEU A 113 SHEET 1 B 6 ARG A 202 PHE A 203 0 SHEET 2 B 6 GLY A 184 ARG A 191 -1 N GLY A 184 O PHE A 203 SHEET 3 B 6 ARG A 172 PHE A 178 -1 N VAL A 173 O ALA A 190 SHEET 4 B 6 GLN A 282 HIS A 291 -1 O LEU A 286 N TYR A 176 SHEET 5 B 6 SER A 271 VAL A 279 -1 N LEU A 273 O CYS A 289 SHEET 6 B 6 LEU A 221 THR A 224 -1 N THR A 224 O SER A 272 LINK SG CYS A 24 CBA LBV A 330 1555 1555 1.83 CISPEP 1 ASP A 235 PRO A 236 0 -4.66 SITE 1 AC1 20 CYS A 24 MET A 174 PHE A 203 HIS A 207 SITE 2 AC1 20 ILE A 208 PRO A 209 TYR A 216 ARG A 254 SITE 3 AC1 20 THR A 256 SER A 257 HIS A 260 TYR A 263 SITE 4 AC1 20 SER A 272 SER A 274 HIS A 290 HOH A 347 SITE 5 AC1 20 HOH A 354 HOH A 362 HOH A 418 HOH A 422 CRYST1 96.413 52.808 74.801 90.00 113.13 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010372 0.000000 0.004430 0.00000 SCALE2 0.000000 0.018937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014537 0.00000