HEADER HYDROLASE INHIBITOR 29-MAY-11 3S8K TITLE CRYSTAL STRUCTURE OF A PAPAYA LATEX SERINE PROTEASE INHIBITOR (PPI) AT TITLE 2 1.7A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LATEX SERINE PROTEINASE INHIBITOR; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARICA PAPAYA; SOURCE 3 ORGANISM_COMMON: MAMON; SOURCE 4 ORGANISM_TAXID: 3649 KEYWDS KUNITZ-STI FOLD, PROTEASE INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO REVDAT 6 20-NOV-24 3S8K 1 REMARK HETSYN LINK REVDAT 5 29-JUL-20 3S8K 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 20-NOV-19 3S8K 1 SEQADV LINK REVDAT 3 08-NOV-17 3S8K 1 REMARK REVDAT 2 19-JUN-13 3S8K 1 JRNL REVDAT 1 02-NOV-11 3S8K 0 JRNL AUTH M.AZARKAN,S.MARTINEZ-RODRIGUEZ,L.BUTS,D.BAEYENS-VOLANT, JRNL AUTH 2 A.GARCIA-PINO JRNL TITL THE PLASTICITY OF THE BETA-TREFOIL FOLD CONSTITUTES AN JRNL TITL 2 EVOLUTIONARY PLATFORM FOR PROTEASE INHIBITION JRNL REF J.BIOL.CHEM. V. 286 43726 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 22027836 JRNL DOI 10.1074/JBC.M111.291310 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 51816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6830 - 4.5189 0.93 2848 160 0.2310 0.2331 REMARK 3 2 4.5189 - 3.5939 0.94 2769 154 0.1685 0.1833 REMARK 3 3 3.5939 - 3.1417 0.98 2824 158 0.1677 0.1710 REMARK 3 4 3.1417 - 2.8554 0.99 2881 145 0.1635 0.1919 REMARK 3 5 2.8554 - 2.6513 0.99 2877 139 0.1571 0.1779 REMARK 3 6 2.6513 - 2.4953 0.99 2839 154 0.1587 0.1845 REMARK 3 7 2.4953 - 2.3705 0.97 2780 155 0.1595 0.1955 REMARK 3 8 2.3705 - 2.2675 0.96 2705 149 0.1644 0.1856 REMARK 3 9 2.2675 - 2.1803 0.94 2696 141 0.1652 0.2069 REMARK 3 10 2.1803 - 2.1052 0.94 2621 149 0.1762 0.2057 REMARK 3 11 2.1052 - 2.0394 0.92 2619 142 0.1871 0.2086 REMARK 3 12 2.0394 - 1.9812 0.86 2428 122 0.1687 0.2083 REMARK 3 13 1.9812 - 1.9291 0.85 2405 128 0.1820 0.1900 REMARK 3 14 1.9291 - 1.8820 0.82 2333 133 0.1895 0.1969 REMARK 3 15 1.8820 - 1.8393 0.82 2307 119 0.1992 0.2161 REMARK 3 16 1.8393 - 1.8002 0.82 2312 128 0.2153 0.2512 REMARK 3 17 1.8002 - 1.7642 0.83 2333 110 0.2174 0.2661 REMARK 3 18 1.7642 - 1.7309 0.81 2300 127 0.2299 0.2321 REMARK 3 19 1.7309 - 1.7000 0.83 2307 119 0.2599 0.2724 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.47 REMARK 3 B_SOL : 63.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.62960 REMARK 3 B22 (A**2) : 19.70260 REMARK 3 B33 (A**2) : -15.07300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3103 REMARK 3 ANGLE : 1.541 4220 REMARK 3 CHIRALITY : 0.092 467 REMARK 3 PLANARITY : 0.006 525 REMARK 3 DIHEDRAL : 12.591 1126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:37) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0886 38.0563 27.2408 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.2967 REMARK 3 T33: 0.2225 T12: -0.0063 REMARK 3 T13: -0.0099 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.7796 L22: 2.0501 REMARK 3 L33: 1.5283 L12: -0.9606 REMARK 3 L13: 0.2343 L23: 0.2510 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: 0.0258 S13: -0.0453 REMARK 3 S21: 0.1219 S22: -0.0381 S23: -0.0132 REMARK 3 S31: 0.1614 S32: 0.2596 S33: -0.0194 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 38:47) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4739 53.0335 24.8922 REMARK 3 T TENSOR REMARK 3 T11: 0.2741 T22: 0.7119 REMARK 3 T33: 0.3747 T12: 0.0909 REMARK 3 T13: 0.0388 T23: -0.1070 REMARK 3 L TENSOR REMARK 3 L11: 5.2811 L22: 3.3849 REMARK 3 L33: 3.8932 L12: -0.5253 REMARK 3 L13: -1.3266 L23: 0.6835 REMARK 3 S TENSOR REMARK 3 S11: 0.1880 S12: -0.3122 S13: 0.6042 REMARK 3 S21: 0.3488 S22: -0.3632 S23: 0.9331 REMARK 3 S31: -0.2921 S32: -0.6725 S33: 0.1223 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 48:78) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4970 38.8129 20.1998 REMARK 3 T TENSOR REMARK 3 T11: 0.2143 T22: 0.2482 REMARK 3 T33: 0.1916 T12: 0.0269 REMARK 3 T13: -0.0084 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.0418 L22: 0.7500 REMARK 3 L33: 1.2950 L12: 0.1626 REMARK 3 L13: 0.0336 L23: -0.2499 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: 0.1503 S13: -0.1736 REMARK 3 S21: -0.1521 S22: -0.0345 S23: 0.0702 REMARK 3 S31: 0.1610 S32: 0.0686 S33: 0.0059 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 79:106) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4383 48.1111 18.5947 REMARK 3 T TENSOR REMARK 3 T11: 0.2176 T22: 0.3206 REMARK 3 T33: 0.2224 T12: 0.0208 REMARK 3 T13: -0.0068 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.2991 L22: 1.9290 REMARK 3 L33: 1.1777 L12: -0.4862 REMARK 3 L13: 0.2410 L23: 0.2220 REMARK 3 S TENSOR REMARK 3 S11: 0.1044 S12: 0.0467 S13: 0.0072 REMARK 3 S21: -0.1511 S22: -0.1368 S23: 0.2860 REMARK 3 S31: -0.0923 S32: -0.3731 S33: 0.0167 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 107:118) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9510 46.8092 10.7965 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.2933 REMARK 3 T33: 0.2137 T12: 0.0056 REMARK 3 T13: -0.0265 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.2224 L22: 0.5970 REMARK 3 L33: 4.5588 L12: -0.4238 REMARK 3 L13: -1.6771 L23: 0.9536 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.4990 S13: -0.0216 REMARK 3 S21: 0.0309 S22: 0.0628 S23: 0.0996 REMARK 3 S31: 0.3510 S32: -0.2280 S33: -0.1012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 119:140) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7019 46.1788 18.3369 REMARK 3 T TENSOR REMARK 3 T11: 0.2593 T22: 0.3248 REMARK 3 T33: 0.2184 T12: 0.0266 REMARK 3 T13: 0.0003 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.4992 L22: 1.0536 REMARK 3 L33: 3.8378 L12: -0.5824 REMARK 3 L13: 1.9224 L23: -1.1670 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: 0.4194 S13: 0.0332 REMARK 3 S21: -0.0283 S22: -0.1220 S23: -0.0642 REMARK 3 S31: -0.2042 S32: 0.6740 S33: 0.0521 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 141:154) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6760 53.6072 9.9115 REMARK 3 T TENSOR REMARK 3 T11: 0.2666 T22: 0.3334 REMARK 3 T33: 0.2411 T12: 0.0165 REMARK 3 T13: 0.0293 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.4515 L22: 0.8844 REMARK 3 L33: 2.9772 L12: -0.1611 REMARK 3 L13: 0.2601 L23: 0.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.1577 S12: 0.2037 S13: 0.1450 REMARK 3 S21: -0.0969 S22: -0.0783 S23: -0.0422 REMARK 3 S31: -0.3785 S32: 0.2652 S33: -0.0730 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 155:171) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3369 55.5216 29.0821 REMARK 3 T TENSOR REMARK 3 T11: 0.2647 T22: 0.2908 REMARK 3 T33: 0.2531 T12: 0.0125 REMARK 3 T13: 0.0226 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.2996 L22: 0.6917 REMARK 3 L33: 1.8181 L12: -0.0323 REMARK 3 L13: -1.5486 L23: 0.0359 REMARK 3 S TENSOR REMARK 3 S11: 0.2604 S12: -0.1332 S13: 0.2229 REMARK 3 S21: 0.0415 S22: -0.0506 S23: 0.0285 REMARK 3 S31: -0.4763 S32: -0.0506 S33: -0.1427 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 172:184) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8227 40.2860 28.8999 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.2774 REMARK 3 T33: 0.1982 T12: -0.0169 REMARK 3 T13: -0.0324 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.0183 L22: 2.8863 REMARK 3 L33: 3.0421 L12: 0.4945 REMARK 3 L13: 0.2206 L23: -0.4875 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: -0.2157 S13: -0.3370 REMARK 3 S21: 0.0952 S22: -0.0438 S23: -0.0962 REMARK 3 S31: 0.2863 S32: -0.0849 S33: 0.0375 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 2:24) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8728 30.8225 43.5508 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.2448 REMARK 3 T33: 0.2275 T12: -0.0169 REMARK 3 T13: -0.0117 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.6894 L22: 2.3659 REMARK 3 L33: 2.0127 L12: 0.0473 REMARK 3 L13: 0.5147 L23: -0.5183 REMARK 3 S TENSOR REMARK 3 S11: 0.1039 S12: -0.1994 S13: -0.0358 REMARK 3 S21: -0.1720 S22: 0.0180 S23: 0.0940 REMARK 3 S31: 0.2409 S32: -0.2721 S33: -0.0737 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 25:47) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0437 46.7863 42.5321 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.3550 REMARK 3 T33: 0.2196 T12: -0.0721 REMARK 3 T13: -0.0097 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 1.3787 L22: 1.2137 REMARK 3 L33: 1.9991 L12: -0.0134 REMARK 3 L13: 0.4945 L23: 0.1217 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: 0.5037 S13: 0.1728 REMARK 3 S21: -0.1491 S22: 0.0655 S23: -0.0731 REMARK 3 S31: -0.3379 S32: 0.4709 S33: 0.0837 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 48:78) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8705 33.8918 48.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.2199 T22: 0.2599 REMARK 3 T33: 0.2476 T12: -0.0098 REMARK 3 T13: -0.0129 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.6628 L22: 0.6852 REMARK 3 L33: 0.8334 L12: 0.2956 REMARK 3 L13: 0.0036 L23: 0.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: -0.0387 S13: -0.0884 REMARK 3 S21: 0.0915 S22: -0.0120 S23: -0.0547 REMARK 3 S31: 0.0352 S32: -0.1444 S33: -0.0352 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 79:154) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5283 41.2339 55.4892 REMARK 3 T TENSOR REMARK 3 T11: 0.1783 T22: 0.2411 REMARK 3 T33: 0.1838 T12: 0.0009 REMARK 3 T13: -0.0028 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.2894 L22: 0.9379 REMARK 3 L33: 2.3548 L12: 0.0593 REMARK 3 L13: 0.2663 L23: -0.1039 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: -0.0871 S13: -0.0114 REMARK 3 S21: 0.1131 S22: 0.0137 S23: -0.0479 REMARK 3 S31: -0.2022 S32: 0.0480 S33: -0.0282 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 155:183) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6050 47.8164 44.6716 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.2401 REMARK 3 T33: 0.2211 T12: 0.0135 REMARK 3 T13: -0.0036 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.6043 L22: 1.3825 REMARK 3 L33: 2.0124 L12: 0.5065 REMARK 3 L13: 0.1729 L23: -0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: 0.1000 S13: 0.1726 REMARK 3 S21: 0.0534 S22: 0.0487 S23: 0.0184 REMARK 3 S31: -0.3225 S32: 0.0224 S33: -0.0545 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8073 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51816 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.150 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.1 M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.13100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.44550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.99600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.44550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.13100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.99600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 VAL B 1 REMARK 465 ARG B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 2 CB REMARK 470 LYS A 4 CD CE NZ REMARK 470 LYS A 12 CE NZ REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 43 CB CG CD CE NZ REMARK 470 ARG A 149 CD NE CZ NH1 NH2 REMARK 470 ASN A 172 CG OD1 ND2 REMARK 470 LYS B 4 CE NZ REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 162 NZ REMARK 470 ASN B 183 CB CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 44 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N NH4 B 185 O HOH B 344 1.83 REMARK 500 O HOH B 360 O HOH B 414 1.90 REMARK 500 N NH4 A 187 O HOH A 281 1.91 REMARK 500 N NH4 A 188 O HOH A 212 1.91 REMARK 500 O HOH A 264 O HOH A 385 2.02 REMARK 500 N NH4 B 185 O HOH B 343 2.09 REMARK 500 OD2 ASP A 52 O HOH A 352 2.11 REMARK 500 OD1 ASP A 52 O HOH A 352 2.13 REMARK 500 O2 SO4 B 191 O HOH B 365 2.13 REMARK 500 N NH4 A 187 O HOH A 267 2.14 REMARK 500 O HOH A 316 O HOH A 362 2.17 REMARK 500 OE2 GLU A 113 O HOH A 319 2.19 REMARK 500 O HOH A 319 O HOH A 380 2.19 REMARK 500 O HOH A 322 O HOH A 328 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 52 O HOH A 352 1655 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 35 -154.86 -151.39 REMARK 500 ASN A 41 -158.59 -104.02 REMARK 500 CYS A 142 76.50 -167.57 REMARK 500 THR B 35 -156.79 -150.63 REMARK 500 ASN B 41 -159.71 -110.28 REMARK 500 HIS B 117 32.08 -143.94 REMARK 500 PHE B 135 19.92 58.70 REMARK 500 CYS B 142 77.57 -167.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 SO4 B 192 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 186 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD2 REMARK 620 2 ASP A 55 OD2 110.3 REMARK 620 3 HOH A 352 O 60.0 130.2 REMARK 620 4 ASP B 52 OD2 62.4 50.1 91.9 REMARK 620 5 ASP B 55 OD2 60.7 50.8 93.9 4.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 185 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 117 NE2 REMARK 620 2 HOH A 215 O 87.9 REMARK 620 3 HOH A 216 O 88.5 85.4 REMARK 620 4 GLU B 113 OE2 34.3 115.5 72.0 REMARK 620 5 HIS B 117 NE2 32.4 113.7 72.3 2.0 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S8J RELATED DB: PDB DBREF 3S8K A 1 184 UNP P80691 LSPI_CARPA 1 184 DBREF 3S8K B 1 184 UNP P80691 LSPI_CARPA 1 184 SEQADV 3S8K ARG A 74 UNP P80691 PHE 74 CONFLICT SEQADV 3S8K ARG B 74 UNP P80691 PHE 74 CONFLICT SEQRES 1 A 184 VAL ALA PRO LYS PRO ILE VAL ASP ILE ASP GLY LYS PRO SEQRES 2 A 184 VAL LEU TYR GLY VAL ASP TYR PHE VAL VAL SER ALA ILE SEQRES 3 A 184 TRP GLY ALA GLY GLY GLY GLY LEU THR VAL TYR GLY PRO SEQRES 4 A 184 GLY ASN LYS LYS LYS CYS PRO LEU SER VAL VAL GLN ASP SEQRES 5 A 184 PRO PHE ASP ASN GLY GLU PRO ILE ILE PHE SER ALA ILE SEQRES 6 A 184 LYS ASN VAL LYS ASP ASN ILE VAL ARG GLU SER VAL ASP SEQRES 7 A 184 LEU ASN VAL LYS PHE ASN ILE THR ILE ASN CYS ASN GLU SEQRES 8 A 184 THR THR ALA TRP LYS VAL ASP ARG PHE PRO GLY VAL ILE SEQRES 9 A 184 GLY TRP THR VAL THR LEU GLY GLY GLU LYS GLY TYR HIS SEQRES 10 A 184 GLY PHE GLU SER THR HIS SER MET PHE LYS ILE LYS LYS SEQRES 11 A 184 ALA GLY LEU PRO PHE SER TYR LYS PHE HIS PHE CYS PRO SEQRES 12 A 184 SER TYR PRO ARG THR ARG LEU ILE PRO CYS ASN ASN VAL SEQRES 13 A 184 ASP ILE PHE PHE ASP LYS TYR ARG ILE ARG ARG LEU ILE SEQRES 14 A 184 LEU THR ASN ASP ALA LYS GLU PHE VAL PHE ILE LYS THR SEQRES 15 A 184 ASN ARG SEQRES 1 B 184 VAL ALA PRO LYS PRO ILE VAL ASP ILE ASP GLY LYS PRO SEQRES 2 B 184 VAL LEU TYR GLY VAL ASP TYR PHE VAL VAL SER ALA ILE SEQRES 3 B 184 TRP GLY ALA GLY GLY GLY GLY LEU THR VAL TYR GLY PRO SEQRES 4 B 184 GLY ASN LYS LYS LYS CYS PRO LEU SER VAL VAL GLN ASP SEQRES 5 B 184 PRO PHE ASP ASN GLY GLU PRO ILE ILE PHE SER ALA ILE SEQRES 6 B 184 LYS ASN VAL LYS ASP ASN ILE VAL ARG GLU SER VAL ASP SEQRES 7 B 184 LEU ASN VAL LYS PHE ASN ILE THR ILE ASN CYS ASN GLU SEQRES 8 B 184 THR THR ALA TRP LYS VAL ASP ARG PHE PRO GLY VAL ILE SEQRES 9 B 184 GLY TRP THR VAL THR LEU GLY GLY GLU LYS GLY TYR HIS SEQRES 10 B 184 GLY PHE GLU SER THR HIS SER MET PHE LYS ILE LYS LYS SEQRES 11 B 184 ALA GLY LEU PRO PHE SER TYR LYS PHE HIS PHE CYS PRO SEQRES 12 B 184 SER TYR PRO ARG THR ARG LEU ILE PRO CYS ASN ASN VAL SEQRES 13 B 184 ASP ILE PHE PHE ASP LYS TYR ARG ILE ARG ARG LEU ILE SEQRES 14 B 184 LEU THR ASN ASP ALA LYS GLU PHE VAL PHE ILE LYS THR SEQRES 15 B 184 ASN ARG MODRES 3S8K ASN B 84 ASN GLYCOSYLATION SITE MODRES 3S8K ASN A 84 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET FUC C 2 10 HET NAG C 3 14 HET NAG D 1 14 HET FUC D 2 10 HET NAG D 3 14 HET CO A 185 1 HET CO A 186 1 HET NH4 A 187 1 HET NH4 A 188 1 HET GOL A 189 6 HET GOL A 190 6 HET SO4 A 191 5 HET SO4 A 192 5 HET SO4 A 193 5 HET SO4 A 194 5 HET SO4 A 195 5 HET NH4 B 185 1 HET GOL B 186 6 HET GOL B 187 6 HET SO4 B 191 5 HET SO4 B 192 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CO COBALT (II) ION HETNAM NH4 AMMONIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 CO 2(CO 2+) FORMUL 7 NH4 3(H4 N 1+) FORMUL 9 GOL 4(C3 H8 O3) FORMUL 11 SO4 7(O4 S 2-) FORMUL 21 HOH *411(H2 O) HELIX 1 1 TRP A 27 GLY A 31 5 5 HELIX 2 2 GLY A 118 MET A 125 5 8 HELIX 3 3 TRP B 27 GLY B 31 5 5 HELIX 4 4 GLY B 118 MET B 125 5 8 SHEET 1 A 2 TYR A 20 SER A 24 0 SHEET 2 A 2 PHE A 177 LYS A 181 -1 O ILE A 180 N PHE A 21 SHEET 1 B 6 GLY A 33 TYR A 37 0 SHEET 2 B 6 SER A 48 ASP A 52 -1 O VAL A 50 N THR A 35 SHEET 3 B 6 ARG A 166 THR A 171 -1 O ARG A 166 N GLN A 51 SHEET 4 B 6 ASN A 154 PHE A 160 -1 N PHE A 159 O ARG A 167 SHEET 5 B 6 TYR A 137 PHE A 141 -1 N PHE A 141 O ASN A 154 SHEET 6 B 6 LYS A 127 LYS A 130 -1 N LYS A 127 O HIS A 140 SHEET 1 C 2 ILE A 60 ALA A 64 0 SHEET 2 C 2 LEU A 79 PHE A 83 -1 O ASN A 80 N SER A 63 SHEET 1 D 2 LYS A 96 PHE A 100 0 SHEET 2 D 2 VAL A 103 THR A 109 -1 O THR A 107 N ASP A 98 SHEET 1 E 2 TYR B 20 SER B 24 0 SHEET 2 E 2 PHE B 177 LYS B 181 -1 O ILE B 180 N PHE B 21 SHEET 1 F 2 GLY B 33 TYR B 37 0 SHEET 2 F 2 SER B 48 ASP B 52 -1 O VAL B 50 N THR B 35 SHEET 1 G 2 ILE B 60 ALA B 64 0 SHEET 2 G 2 LEU B 79 PHE B 83 -1 O ASN B 80 N SER B 63 SHEET 1 H 2 LYS B 96 PHE B 100 0 SHEET 2 H 2 VAL B 103 THR B 109 -1 O THR B 109 N LYS B 96 SHEET 1 I 4 LYS B 127 LYS B 130 0 SHEET 2 I 4 TYR B 137 PHE B 141 -1 O HIS B 140 N LYS B 127 SHEET 3 I 4 ASN B 154 PHE B 160 -1 O ASN B 154 N PHE B 141 SHEET 4 I 4 ARG B 166 THR B 171 -1 O ILE B 169 N ASP B 157 SSBOND 1 CYS A 45 CYS A 89 1555 1555 2.05 SSBOND 2 CYS A 142 CYS A 153 1555 1555 2.10 SSBOND 3 CYS B 45 CYS B 89 1555 1555 2.05 SSBOND 4 CYS B 142 CYS B 153 1555 1555 2.09 LINK ND2 ASN A 84 C1 NAG C 1 1555 1555 1.48 LINK ND2 ASN B 84 C1 NAG D 1 1555 1555 1.47 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 3 1555 1555 1.45 LINK O3 NAG D 1 C1 FUC D 2 1555 1555 1.47 LINK O4 NAG D 1 C1 NAG D 3 1555 1555 1.44 LINK OD2 ASP A 52 CO CO A 186 1555 1555 1.93 LINK OD2 ASP A 55 CO CO A 186 1555 1555 1.98 LINK NE2 HIS A 117 CO CO A 185 1555 1555 2.15 LINK CO CO A 185 O HOH A 215 1555 1555 1.98 LINK CO CO A 185 O HOH A 216 1555 1555 2.03 LINK CO CO A 185 OE2 GLU B 113 2665 1555 2.18 LINK CO CO A 185 NE2 HIS B 117 2665 1555 2.20 LINK CO CO A 186 O HOH A 352 1555 1555 2.25 LINK CO CO A 186 OD2 ASP B 52 1655 1555 1.95 LINK CO CO A 186 OD2 ASP B 55 1655 1555 1.98 CISPEP 1 CYS A 45 PRO A 46 0 -1.19 CISPEP 2 CYS B 45 PRO B 46 0 -3.59 CRYST1 44.262 81.992 140.891 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007098 0.00000