HEADER TRANSFERASE 30-MAY-11 3S8P TITLE CRYSTAL STRUCTURE OF THE SET DOMAIN OF HUMAN HISTONE-LYSINE N- TITLE 2 METHYLTRANSFERASE SUV420H1 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SUV420H1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SET DOMAIN; COMPND 5 SYNONYM: LYSINE N-METHYLTRANSFERASE 5B, SUPPRESSOR OF VARIEGATION 4- COMPND 6 20 HOMOLOG 1, SU(VAR)4-20 HOMOLOG 1, SUV4-20H1; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CGI-85, KMT5B, SUV420H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS SET DOMAIN, HISTONE METHYLTRANSFERASE, TRANSCRIPTION REGULATION, KEYWDS 2 HISTONE LYSINE, SAM, METHYLATION, NUCLEUS, CHROMOSOME, STRUCTURAL KEYWDS 3 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.LAM,H.ZENG,P.LOPPNAU,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 20-NOV-24 3S8P 1 REMARK LINK REVDAT 3 08-NOV-17 3S8P 1 REMARK REVDAT 2 15-JAN-14 3S8P 1 JRNL VERSN REVDAT 1 06-JUL-11 3S8P 0 JRNL AUTH H.WU,A.SIARHEYEVA,H.ZENG,R.LAM,A.DONG,X.H.WU,Y.LI, JRNL AUTH 2 M.SCHAPIRA,M.VEDADI,J.MIN JRNL TITL CRYSTAL STRUCTURES OF THE HUMAN HISTONE H4K20 JRNL TITL 2 METHYLTRANSFERASES SUV420H1 AND SUV420H2. JRNL REF FEBS LETT. V. 587 3859 2013 JRNL REFN ISSN 0014-5793 JRNL PMID 24396869 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.6.0081 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 52470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2672 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.04000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3849 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5188 ; 1.241 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;34.867 ;24.550 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 667 ;14.048 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2933 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4580 44.2000 7.4600 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0315 REMARK 3 T33: 0.0154 T12: -0.0084 REMARK 3 T13: -0.0009 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.2520 L22: 0.6402 REMARK 3 L33: 0.7129 L12: -0.3530 REMARK 3 L13: 0.2735 L23: -0.2711 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.1788 S13: 0.0427 REMARK 3 S21: 0.0005 S22: 0.0260 S23: -0.0009 REMARK 3 S31: 0.0033 S32: -0.0154 S33: -0.0385 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1700 18.9260 -18.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.0166 REMARK 3 T33: 0.0105 T12: 0.0076 REMARK 3 T13: 0.0068 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.9920 L22: 0.7695 REMARK 3 L33: 1.0606 L12: 0.2704 REMARK 3 L13: 0.3268 L23: 0.6376 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.1207 S13: 0.0337 REMARK 3 S21: -0.0213 S22: 0.0060 S23: -0.0267 REMARK 3 S31: -0.0520 S32: 0.0116 S33: -0.0181 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 3S8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97904 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52506 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, DM 6.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M SODIUM FORMATE, 0.1 M BISTRIS REMARK 280 PROPANE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 63 REMARK 465 SER A 64 REMARK 465 ARG A 65 REMARK 465 TYR A 66 REMARK 465 VAL A 67 REMARK 465 PRO A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 GLY A 71 REMARK 465 SER A 103 REMARK 465 ALA A 104 REMARK 465 PHE A 105 REMARK 465 PRO A 106 REMARK 465 SER A 107 REMARK 465 ARG A 108 REMARK 465 SER A 109 REMARK 465 SER A 110 REMARK 465 ARG A 111 REMARK 465 HIS A 112 REMARK 465 PHE A 113 REMARK 465 SER A 114 REMARK 465 LYS A 115 REMARK 465 SER A 116 REMARK 465 ASP A 117 REMARK 465 SER A 118 REMARK 465 PHE A 119 REMARK 465 SER A 120 REMARK 465 HIS A 121 REMARK 465 ASN A 122 REMARK 465 ASN A 123 REMARK 465 PRO A 124 REMARK 465 VAL A 125 REMARK 465 ARG A 126 REMARK 465 PHE A 127 REMARK 465 ARG A 128 REMARK 465 PRO A 129 REMARK 465 ILE A 130 REMARK 465 LYS A 131 REMARK 465 GLY A 132 REMARK 465 ARG A 335 REMARK 465 GLN B 63 REMARK 465 SER B 64 REMARK 465 ARG B 65 REMARK 465 TYR B 66 REMARK 465 VAL B 67 REMARK 465 PRO B 68 REMARK 465 SER B 69 REMARK 465 SER B 70 REMARK 465 SER B 103 REMARK 465 ALA B 104 REMARK 465 PHE B 105 REMARK 465 PRO B 106 REMARK 465 SER B 107 REMARK 465 ARG B 108 REMARK 465 SER B 109 REMARK 465 SER B 110 REMARK 465 ARG B 111 REMARK 465 HIS B 112 REMARK 465 PHE B 113 REMARK 465 SER B 114 REMARK 465 LYS B 115 REMARK 465 SER B 116 REMARK 465 ASP B 117 REMARK 465 SER B 118 REMARK 465 PHE B 119 REMARK 465 SER B 120 REMARK 465 HIS B 121 REMARK 465 ASN B 122 REMARK 465 ASN B 123 REMARK 465 PRO B 124 REMARK 465 VAL B 125 REMARK 465 ARG B 126 REMARK 465 PHE B 127 REMARK 465 SER B 334 REMARK 465 ARG B 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 TRP A 162 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 162 CZ3 CH2 REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 165 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 168 CG CD1 CD2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 165 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 166 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 167 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 168 CG CD1 CD2 REMARK 470 ASN B 169 CG OD1 ND2 REMARK 470 GLU B 314 CG CD OE1 OE2 REMARK 470 LYS B 333 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 220 128.13 -38.56 REMARK 500 ASN A 221 -7.07 81.28 REMARK 500 PHE A 312 65.62 -103.21 REMARK 500 GLU B 148 19.80 59.40 REMARK 500 ARG B 220 128.53 -38.98 REMARK 500 ASN B 221 -3.69 78.67 REMARK 500 PHE B 312 63.12 -103.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 275 SG REMARK 620 2 CYS A 319 SG 110.1 REMARK 620 3 CYS A 321 SG 111.9 106.0 REMARK 620 4 CYS A 324 SG 104.3 114.1 110.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 275 SG REMARK 620 2 CYS B 319 SG 112.8 REMARK 620 3 CYS B 321 SG 109.7 106.0 REMARK 620 4 CYS B 324 SG 103.4 115.9 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 500 DBREF 3S8P A 63 335 UNP Q4FZB7 SV421_HUMAN 63 335 DBREF 3S8P B 63 335 UNP Q4FZB7 SV421_HUMAN 63 335 SEQRES 1 A 273 GLN SER ARG TYR VAL PRO SER SER GLY MSE SER ALA LYS SEQRES 2 A 273 GLU LEU CYS GLU ASN ASP ASP LEU ALA THR SER LEU VAL SEQRES 3 A 273 LEU ASP PRO TYR LEU GLY PHE GLN THR HIS LYS MSE ASN SEQRES 4 A 273 THR SER ALA PHE PRO SER ARG SER SER ARG HIS PHE SER SEQRES 5 A 273 LYS SER ASP SER PHE SER HIS ASN ASN PRO VAL ARG PHE SEQRES 6 A 273 ARG PRO ILE LYS GLY ARG GLN GLU GLU LEU LYS GLU VAL SEQRES 7 A 273 ILE GLU ARG PHE LYS LYS ASP GLU HIS LEU GLU LYS ALA SEQRES 8 A 273 PHE LYS CYS LEU THR SER GLY GLU TRP ALA ARG HIS TYR SEQRES 9 A 273 PHE LEU ASN LYS ASN LYS MSE GLN GLU LYS LEU PHE LYS SEQRES 10 A 273 GLU HIS VAL PHE ILE TYR LEU ARG MSE PHE ALA THR ASP SEQRES 11 A 273 SER GLY PHE GLU ILE LEU PRO CYS ASN ARG TYR SER SER SEQRES 12 A 273 GLU GLN ASN GLY ALA LYS ILE VAL ALA THR LYS GLU TRP SEQRES 13 A 273 LYS ARG ASN ASP LYS ILE GLU LEU LEU VAL GLY CYS ILE SEQRES 14 A 273 ALA GLU LEU SER GLU ILE GLU GLU ASN MSE LEU LEU ARG SEQRES 15 A 273 HIS GLY GLU ASN ASP PHE SER VAL MSE TYR SER THR ARG SEQRES 16 A 273 LYS ASN CYS ALA GLN LEU TRP LEU GLY PRO ALA ALA PHE SEQRES 17 A 273 ILE ASN HIS ASP CYS ARG PRO ASN CYS LYS PHE VAL SER SEQRES 18 A 273 THR GLY ARG ASP THR ALA CYS VAL LYS ALA LEU ARG ASP SEQRES 19 A 273 ILE GLU PRO GLY GLU GLU ILE SER CYS TYR TYR GLY ASP SEQRES 20 A 273 GLY PHE PHE GLY GLU ASN ASN GLU PHE CYS GLU CYS TYR SEQRES 21 A 273 THR CYS GLU ARG ARG GLY THR GLY ALA PHE LYS SER ARG SEQRES 1 B 273 GLN SER ARG TYR VAL PRO SER SER GLY MSE SER ALA LYS SEQRES 2 B 273 GLU LEU CYS GLU ASN ASP ASP LEU ALA THR SER LEU VAL SEQRES 3 B 273 LEU ASP PRO TYR LEU GLY PHE GLN THR HIS LYS MSE ASN SEQRES 4 B 273 THR SER ALA PHE PRO SER ARG SER SER ARG HIS PHE SER SEQRES 5 B 273 LYS SER ASP SER PHE SER HIS ASN ASN PRO VAL ARG PHE SEQRES 6 B 273 ARG PRO ILE LYS GLY ARG GLN GLU GLU LEU LYS GLU VAL SEQRES 7 B 273 ILE GLU ARG PHE LYS LYS ASP GLU HIS LEU GLU LYS ALA SEQRES 8 B 273 PHE LYS CYS LEU THR SER GLY GLU TRP ALA ARG HIS TYR SEQRES 9 B 273 PHE LEU ASN LYS ASN LYS MSE GLN GLU LYS LEU PHE LYS SEQRES 10 B 273 GLU HIS VAL PHE ILE TYR LEU ARG MSE PHE ALA THR ASP SEQRES 11 B 273 SER GLY PHE GLU ILE LEU PRO CYS ASN ARG TYR SER SER SEQRES 12 B 273 GLU GLN ASN GLY ALA LYS ILE VAL ALA THR LYS GLU TRP SEQRES 13 B 273 LYS ARG ASN ASP LYS ILE GLU LEU LEU VAL GLY CYS ILE SEQRES 14 B 273 ALA GLU LEU SER GLU ILE GLU GLU ASN MSE LEU LEU ARG SEQRES 15 B 273 HIS GLY GLU ASN ASP PHE SER VAL MSE TYR SER THR ARG SEQRES 16 B 273 LYS ASN CYS ALA GLN LEU TRP LEU GLY PRO ALA ALA PHE SEQRES 17 B 273 ILE ASN HIS ASP CYS ARG PRO ASN CYS LYS PHE VAL SER SEQRES 18 B 273 THR GLY ARG ASP THR ALA CYS VAL LYS ALA LEU ARG ASP SEQRES 19 B 273 ILE GLU PRO GLY GLU GLU ILE SER CYS TYR TYR GLY ASP SEQRES 20 B 273 GLY PHE PHE GLY GLU ASN ASN GLU PHE CYS GLU CYS TYR SEQRES 21 B 273 THR CYS GLU ARG ARG GLY THR GLY ALA PHE LYS SER ARG MODRES 3S8P MSE A 72 MET SELENOMETHIONINE MODRES 3S8P MSE A 100 MET SELENOMETHIONINE MODRES 3S8P MSE A 173 MET SELENOMETHIONINE MODRES 3S8P MSE A 188 MET SELENOMETHIONINE MODRES 3S8P MSE A 241 MET SELENOMETHIONINE MODRES 3S8P MSE A 253 MET SELENOMETHIONINE MODRES 3S8P MSE B 72 MET SELENOMETHIONINE MODRES 3S8P MSE B 100 MET SELENOMETHIONINE MODRES 3S8P MSE B 173 MET SELENOMETHIONINE MODRES 3S8P MSE B 188 MET SELENOMETHIONINE MODRES 3S8P MSE B 241 MET SELENOMETHIONINE MODRES 3S8P MSE B 253 MET SELENOMETHIONINE HET MSE A 72 8 HET MSE A 100 8 HET MSE A 173 8 HET MSE A 188 8 HET MSE A 241 8 HET MSE A 253 8 HET MSE B 72 8 HET MSE B 100 8 HET MSE B 173 8 HET MSE B 188 8 HET MSE B 241 13 HET MSE B 253 8 HET ZN A 400 1 HET SAM A 500 27 HET ZN B 400 1 HET SAM B 500 27 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SAM 2(C15 H22 N6 O5 S) FORMUL 7 HOH *270(H2 O) HELIX 1 1 SER A 73 GLY A 94 1 22 HELIX 2 2 ARG A 133 GLU A 148 1 16 HELIX 3 3 HIS A 149 THR A 158 1 10 HELIX 4 4 GLY A 160 LEU A 168 1 9 HELIX 5 5 ASN A 171 MSE A 188 1 18 HELIX 6 6 PHE A 189 SER A 193 5 5 HELIX 7 7 SER A 235 LEU A 243 1 9 HELIX 8 8 GLY A 266 ILE A 271 5 6 HELIX 9 9 GLY A 313 GLU A 317 5 5 HELIX 10 10 CYS A 321 GLY A 328 1 8 HELIX 11 11 THR A 329 LYS A 333 5 5 HELIX 12 12 SER B 73 LEU B 89 1 17 HELIX 13 13 LEU B 89 GLY B 94 1 6 HELIX 14 14 GLY B 132 GLU B 148 1 17 HELIX 15 15 HIS B 149 SER B 159 1 11 HELIX 16 16 TRP B 162 LEU B 168 1 7 HELIX 17 17 ASN B 171 MSE B 188 1 18 HELIX 18 18 SER B 235 LEU B 243 1 9 HELIX 19 19 GLY B 266 ILE B 271 5 6 HELIX 20 20 GLY B 313 GLU B 317 5 5 HELIX 21 21 CYS B 321 GLY B 328 1 8 HELIX 22 22 THR B 329 LYS B 333 5 5 SHEET 1 A 2 PHE A 195 CYS A 200 0 SHEET 2 A 2 GLY A 209 ALA A 214 -1 O VAL A 213 N GLU A 196 SHEET 1 B 5 VAL A 252 SER A 255 0 SHEET 2 B 5 CYS A 260 LEU A 265 -1 O CYS A 260 N SER A 255 SHEET 3 B 5 LYS A 223 LEU A 234 -1 N CYS A 230 O LEU A 265 SHEET 4 B 5 THR A 288 ALA A 293 -1 O VAL A 291 N ILE A 224 SHEET 5 B 5 CYS A 279 GLY A 285 -1 N VAL A 282 O CYS A 290 SHEET 1 C 2 ASN A 272 HIS A 273 0 SHEET 2 C 2 SER A 304 CYS A 305 1 O CYS A 305 N ASN A 272 SHEET 1 D 2 PHE B 195 CYS B 200 0 SHEET 2 D 2 GLY B 209 ALA B 214 -1 O VAL B 213 N GLU B 196 SHEET 1 E 5 VAL B 252 SER B 255 0 SHEET 2 E 5 CYS B 260 LEU B 265 -1 O CYS B 260 N SER B 255 SHEET 3 E 5 LYS B 223 LEU B 234 -1 N CYS B 230 O LEU B 265 SHEET 4 E 5 THR B 288 ALA B 293 -1 O VAL B 291 N ILE B 224 SHEET 5 E 5 CYS B 279 GLY B 285 -1 N VAL B 282 O CYS B 290 SHEET 1 F 2 ASN B 272 HIS B 273 0 SHEET 2 F 2 SER B 304 CYS B 305 1 O CYS B 305 N ASN B 272 LINK C MSE A 72 N SER A 73 1555 1555 1.33 LINK C LYS A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N ASN A 101 1555 1555 1.34 LINK C LYS A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N GLN A 174 1555 1555 1.33 LINK C ARG A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N PHE A 189 1555 1555 1.33 LINK C ASN A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N LEU A 242 1555 1555 1.34 LINK C VAL A 252 N MSE A 253 1555 1555 1.33 LINK C MSE A 253 N TYR A 254 1555 1555 1.33 LINK C GLY B 71 N MSE B 72 1555 1555 1.33 LINK C MSE B 72 N SER B 73 1555 1555 1.33 LINK C LYS B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N ASN B 101 1555 1555 1.34 LINK C LYS B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N GLN B 174 1555 1555 1.33 LINK C ARG B 187 N MSE B 188 1555 1555 1.33 LINK C MSE B 188 N PHE B 189 1555 1555 1.33 LINK C ASN B 240 N MSE B 241 1555 1555 1.33 LINK C MSE B 241 N LEU B 242 1555 1555 1.33 LINK C VAL B 252 N MSE B 253 1555 1555 1.33 LINK C MSE B 253 N TYR B 254 1555 1555 1.33 LINK SG CYS A 275 ZN ZN A 400 1555 1555 2.35 LINK SG CYS A 319 ZN ZN A 400 1555 1555 2.32 LINK SG CYS A 321 ZN ZN A 400 1555 1555 2.28 LINK SG CYS A 324 ZN ZN A 400 1555 1555 2.37 LINK SG CYS B 275 ZN ZN B 400 1555 1555 2.19 LINK SG CYS B 319 ZN ZN B 400 1555 1555 2.35 LINK SG CYS B 321 ZN ZN B 400 1555 1555 2.34 LINK SG CYS B 324 ZN ZN B 400 1555 1555 2.34 SITE 1 AC1 4 CYS A 275 CYS A 319 CYS A 321 CYS A 324 SITE 1 AC2 20 HOH A 31 HIS A 98 TYR A 203 SER A 205 SITE 2 AC2 20 GLU A 206 GLY A 209 ALA A 210 PHE A 250 SITE 3 AC2 20 ALA A 269 PHE A 270 ILE A 271 ASN A 272 SITE 4 AC2 20 HIS A 273 TYR A 307 PHE A 312 CYS A 319 SITE 5 AC2 20 GLU A 320 CYS A 321 HOH A 436 ARG B 257 SITE 1 AC3 4 CYS B 275 CYS B 319 CYS B 321 CYS B 324 SITE 1 AC4 21 ARG A 257 HOH A 352 HOH B 14 HOH B 52 SITE 2 AC4 21 HIS B 98 TYR B 203 SER B 205 GLU B 206 SITE 3 AC4 21 GLY B 209 ALA B 210 PHE B 250 ALA B 269 SITE 4 AC4 21 PHE B 270 ILE B 271 ASN B 272 HIS B 273 SITE 5 AC4 21 TYR B 307 PHE B 312 CYS B 319 GLU B 320 SITE 6 AC4 21 CYS B 321 CRYST1 46.424 50.134 74.839 100.99 108.05 89.76 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021541 -0.000088 0.007144 0.00000 SCALE2 0.000000 0.019947 0.004052 0.00000 SCALE3 0.000000 0.000000 0.014341 0.00000 HETATM 1 N MSE A 72 -9.949 39.283 3.480 1.00 44.08 N ANISOU 1 N MSE A 72 5409 5584 5755 -297 -274 458 N HETATM 2 CA MSE A 72 -9.772 40.740 3.183 1.00 38.65 C ANISOU 2 CA MSE A 72 4738 4916 5031 -248 -234 403 C HETATM 3 C MSE A 72 -9.572 41.004 1.696 1.00 36.83 C ANISOU 3 C MSE A 72 4565 4626 4802 -239 -272 358 C HETATM 4 O MSE A 72 -8.811 40.309 1.018 1.00 43.15 O ANISOU 4 O MSE A 72 5421 5372 5601 -249 -306 333 O HETATM 5 CB MSE A 72 -8.574 41.327 3.954 1.00 39.13 C ANISOU 5 CB MSE A 72 4824 4999 5044 -214 -179 361 C HETATM 6 CG MSE A 72 -8.865 41.659 5.412 1.00 38.48 C ANISOU 6 CG MSE A 72 4682 4999 4937 -198 -128 387 C HETATM 7 SE MSE A 72 -7.339 42.414 6.356 0.75 38.85 SE ANISOU 7 SE MSE A 72 4763 5073 4925 -157 -75 322 SE HETATM 8 CE MSE A 72 -6.127 40.871 6.225 1.00 38.24 C ANISOU 8 CE MSE A 72 4732 4941 4855 -193 -111 338 C