HEADER LIPID BINDING PROTEIN 01-JUN-11 3S99 TITLE CRYSTAL STRUCTURE OF A BASIC MEMBRANE LIPOPROTEIN FROM BRUCELLA TITLE 2 MELITENSIS, IODIDE SOAK COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC MEMBRANE LIPOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-350; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOVAR ABORTUS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: ABORTUS 2308; SOURCE 5 GENE: BAB2_0673; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, BASIC MEMBRANE LIPOPROTEIN, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, ADENINE, LIPID KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 03-APR-24 3S99 1 REMARK REVDAT 2 28-FEB-24 3S99 1 REMARK SEQADV LINK REVDAT 1 22-JUN-11 3S99 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,T.E.EDWARDS,B.L.STAKER JRNL TITL CRYSTAL STRUCTURE OF A BASIC MEMBRANE LIPOPROTEIN FROM JRNL TITL 2 BRUCELLA MELITENSIS, IODIDE SOAK JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 20305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1093 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1328 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2525 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : 2.29000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.746 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2597 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1709 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3528 ; 1.343 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4174 ; 0.888 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 5.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;35.724 ;25.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;12.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2945 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 524 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1634 ; 0.662 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 674 ; 0.177 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2610 ; 1.168 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 963 ; 1.972 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 918 ; 2.985 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 349 REMARK 3 RESIDUE RANGE : A 351 A 400 REMARK 3 RESIDUE RANGE : A 402 A 651 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5700 23.2930 41.6600 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.0380 REMARK 3 T33: 0.0076 T12: -0.0072 REMARK 3 T13: 0.0105 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.4310 L22: 0.3027 REMARK 3 L33: 1.4945 L12: -0.3404 REMARK 3 L13: 0.8191 L23: -0.4080 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.1093 S13: -0.0160 REMARK 3 S21: 0.0029 S22: 0.0030 S23: -0.0168 REMARK 3 S31: 0.0289 S32: -0.0955 S33: 0.0031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3S99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21344 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 24.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : 0.29700 REMARK 200 FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SOLVED VIA SAD PHASING BASED ON IODIDE IONS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 100MM BISTRIS, 200MM REMARK 280 NACL; BRABA.17960.A.A2, PS01053 AT 37.0MG/ML, CRYSTALS SOAKED REMARK 280 FOR 30MIN IN 25% PEG 3350, 100M BISTRIS, 200MM NACL, 10% EG, REMARK 280 300MM NAI, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH REMARK 280 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.82000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.92500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.82000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.92500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.62000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.82000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.92500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.82000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.92500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 ALA A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 THR A 10 REMARK 465 GLN A 11 REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 MET A 16 REMARK 465 ALA A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 GLN A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 347 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 464 O HOH A 579 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 111 -1.50 77.52 REMARK 500 SER A 151 -90.94 -89.94 REMARK 500 VAL A 171 -58.11 -120.09 REMARK 500 ASP A 187 78.92 -163.75 REMARK 500 ALA A 230 -50.40 79.67 REMARK 500 ALA A 237 60.36 -160.45 REMARK 500 THR A 243 -168.62 -175.54 REMARK 500 TRP A 322 -60.42 -105.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 368 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 456 O REMARK 620 2 HOH A 475 O 102.9 REMARK 620 3 HOH A 569 O 158.2 98.6 REMARK 620 4 HOH A 651 O 92.9 91.9 82.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 368 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADE A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BRABA.17690.A RELATED DB: TARGETDB DBREF 3S99 A 17 350 UNP Q2YKI6 Q2YKI6_BRUA2 17 350 SEQADV 3S99 MET A -5 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 ALA A -4 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 HIS A -3 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 HIS A -2 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 HIS A -1 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 HIS A 0 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 HIS A 1 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 HIS A 2 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 MET A 3 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 GLY A 4 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 THR A 5 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 LEU A 6 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 GLU A 7 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 ALA A 8 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 GLN A 9 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 THR A 10 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 GLN A 11 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 GLY A 12 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 PRO A 13 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 GLY A 14 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 SER A 15 UNP Q2YKI6 EXPRESSION TAG SEQADV 3S99 MET A 16 UNP Q2YKI6 EXPRESSION TAG SEQRES 1 A 356 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 356 ALA GLN THR GLN GLY PRO GLY SER MET ALA GLU GLU LYS SEQRES 3 A 356 LEU LYS VAL GLY PHE ILE TYR ILE GLY PRO PRO GLY ASP SEQRES 4 A 356 PHE GLY TRP THR TYR GLN HIS ASP GLN ALA ARG LYS GLU SEQRES 5 A 356 LEU VAL GLU ALA LEU GLY ASP LYS VAL GLU THR THR PHE SEQRES 6 A 356 LEU GLU ASN VAL ALA GLU GLY ALA ASP ALA GLU ARG SER SEQRES 7 A 356 ILE LYS ARG ILE ALA ARG ALA GLY ASN LYS LEU ILE PHE SEQRES 8 A 356 THR THR SER PHE GLY TYR MET ASP PRO THR VAL LYS VAL SEQRES 9 A 356 ALA LYS LYS PHE PRO ASP VAL LYS PHE GLU HIS ALA THR SEQRES 10 A 356 GLY TYR LYS THR ALA ASP ASN MET SER ALA TYR ASN ALA SEQRES 11 A 356 ARG PHE TYR GLU GLY ARG TYR VAL GLN GLY VAL ILE ALA SEQRES 12 A 356 ALA LYS MET SER LYS LYS GLY ILE ALA GLY TYR ILE GLY SEQRES 13 A 356 SER VAL PRO VAL PRO GLU VAL VAL GLN GLY ILE ASN SER SEQRES 14 A 356 PHE MET LEU GLY ALA GLN SER VAL ASN PRO ASP PHE ARG SEQRES 15 A 356 VAL LYS VAL ILE TRP VAL ASN SER TRP PHE ASP PRO GLY SEQRES 16 A 356 LYS GLU ALA ASP ALA ALA LYS ALA LEU ILE ASP GLN GLY SEQRES 17 A 356 VAL ASP ILE ILE THR GLN HIS THR ASP SER THR ALA ALA SEQRES 18 A 356 ILE GLN VAL ALA HIS ASP ARG GLY ILE LYS ALA PHE GLY SEQRES 19 A 356 GLN ALA SER ASP MET ILE LYS PHE ALA PRO ASP THR GLN SEQRES 20 A 356 LEU THR ALA VAL VAL ASP GLU TRP GLY PRO TYR TYR ILE SEQRES 21 A 356 ASP ARG ALA LYS ALA VAL LEU ASP GLY THR TRP LYS SER SEQRES 22 A 356 GLN ASN ILE TRP TRP GLY MET LYS GLU GLY LEU VAL LYS SEQRES 23 A 356 MET ALA PRO PHE THR ASN MET PRO ASP ASP VAL LYS LYS SEQRES 24 A 356 LEU ALA GLU GLU THR GLU ALA ARG ILE LYS SER GLY GLU SEQRES 25 A 356 LEU ASN PRO PHE THR GLY PRO ILE LYS LYS GLN ASP GLY SEQRES 26 A 356 SER GLU TRP LEU LYS ALA GLY GLU LYS ALA ASP ASP GLN SEQRES 27 A 356 THR LEU LEU GLY MET ASN PHE TYR VAL ALA GLY VAL ASP SEQRES 28 A 356 ASP LYS LEU PRO GLN HET IOD A 351 1 HET IOD A 352 1 HET IOD A 353 1 HET IOD A 354 1 HET IOD A 355 1 HET IOD A 356 1 HET IOD A 357 1 HET IOD A 358 1 HET IOD A 359 1 HET IOD A 360 1 HET IOD A 361 1 HET IOD A 362 1 HET IOD A 363 1 HET IOD A 364 1 HET IOD A 365 1 HET IOD A 366 1 HET IOD A 367 1 HET MG A 368 1 HET ADE A 400 10 HETNAM IOD IODIDE ION HETNAM MG MAGNESIUM ION HETNAM ADE ADENINE FORMUL 2 IOD 17(I 1-) FORMUL 19 MG MG 2+ FORMUL 20 ADE C5 H5 N5 FORMUL 21 HOH *250(H2 O) HELIX 1 1 PRO A 30 PHE A 34 5 5 HELIX 2 2 GLY A 35 GLY A 52 1 18 HELIX 3 3 GLY A 66 ALA A 79 1 14 HELIX 4 4 SER A 88 GLY A 90 5 3 HELIX 5 5 TYR A 91 LYS A 100 1 10 HELIX 6 6 ARG A 125 SER A 141 1 17 HELIX 7 7 VAL A 154 SER A 170 1 17 HELIX 8 8 ASP A 187 GLN A 201 1 15 HELIX 9 9 THR A 213 ARG A 222 1 10 HELIX 10 10 MET A 233 ALA A 237 5 5 HELIX 11 11 TRP A 249 ASP A 262 1 14 HELIX 12 12 PRO A 288 SER A 304 1 17 HELIX 13 13 ASP A 330 GLY A 336 1 7 SHEET 1 A 6 VAL A 55 LEU A 60 0 SHEET 2 A 6 LEU A 21 ILE A 26 1 N VAL A 23 O GLU A 56 SHEET 3 A 6 LEU A 83 THR A 86 1 O PHE A 85 N GLY A 24 SHEET 4 A 6 LYS A 106 ALA A 110 1 O ALA A 110 N THR A 86 SHEET 5 A 6 MET A 119 ALA A 124 1 O TYR A 122 N HIS A 109 SHEET 6 A 6 ASN A 269 TRP A 272 1 O ILE A 270 N ALA A 121 SHEET 1 B 6 ARG A 176 TRP A 181 0 SHEET 2 B 6 ILE A 145 GLY A 150 1 N TYR A 148 O LYS A 178 SHEET 3 B 6 ILE A 205 GLN A 208 1 O ILE A 205 N GLY A 147 SHEET 4 B 6 LYS A 225 ALA A 230 1 O PHE A 227 N ILE A 206 SHEET 5 B 6 GLN A 241 ASP A 247 1 O LEU A 242 N ALA A 226 SHEET 6 B 6 VAL A 279 MET A 281 -1 O LYS A 280 N VAL A 246 SHEET 1 C 2 ILE A 314 LYS A 315 0 SHEET 2 C 2 GLU A 321 LEU A 323 -1 O TRP A 322 N ILE A 314 LINK MG MG A 368 O HOH A 456 1555 1555 2.43 LINK MG MG A 368 O HOH A 475 1555 1555 2.53 LINK MG MG A 368 O HOH A 569 1555 1555 2.67 LINK MG MG A 368 O HOH A 651 1555 1555 2.50 CISPEP 1 GLY A 312 PRO A 313 0 6.18 SITE 1 AC1 1 LYS A 225 SITE 1 AC2 3 TRP A 322 ASP A 330 THR A 333 SITE 1 AC3 1 VAL A 179 SITE 1 AC4 3 GLU A 65 TRP A 185 HOH A 553 SITE 1 AC5 1 ILE A 76 SITE 1 AC6 2 PHE A 102 ASP A 104 SITE 1 AC7 2 MET A 140 HOH A 482 SITE 1 AC8 1 ASP A 318 SITE 1 AC9 3 THR A 115 GLN A 332 HOH A 448 SITE 1 BC1 1 ARG A 71 SITE 1 BC2 1 HOH A 575 SITE 1 BC3 1 ARG A 44 SITE 1 BC4 6 ASP A 117 ASN A 308 HOH A 456 HOH A 475 SITE 2 BC4 6 HOH A 569 HOH A 651 SITE 1 BC5 10 TRP A 36 SER A 88 PHE A 89 THR A 111 SITE 2 BC5 10 GLU A 156 TRP A 185 HIS A 209 ASP A 211 SITE 3 BC5 10 HOH A 403 HOH A 413 CRYST1 83.640 85.850 95.240 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010500 0.00000