HEADER UNKNOWN FUNCTION 01-JUN-11 3S9J TITLE CRYSTAL STRUCTURE OF A MEMBER OF DUF4221 FAMILY (BVU_1028) FROM TITLE 2 BACTEROIDES VULGATUS ATCC 8482 AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBER OF DUF4221 FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 27-394; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_1028; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 6-BLADED BETA-PROPELLER, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3S9J 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3S9J 1 REMARK REVDAT 3 23-NOV-11 3S9J 1 TITLE REVDAT 2 13-JUL-11 3S9J 1 TITLE REVDAT 1 22-JUN-11 3S9J 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A MEMBER OF DUF4221 FAMILY (BVU_1028) JRNL TITL 2 FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3963 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3003 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3387 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2419 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4604 ; 1.475 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5916 ; 0.892 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 6.407 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;31.288 ;24.389 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;14.253 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.049 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3780 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 730 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 1.605 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 771 ; 0.458 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3161 ; 2.648 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1436 ; 4.118 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1405 ; 6.122 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 390 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9036 32.7871 27.7335 REMARK 3 T TENSOR REMARK 3 T11: 0.0365 T22: 0.0644 REMARK 3 T33: 0.0664 T12: 0.0059 REMARK 3 T13: 0.0144 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.6492 L22: 1.1289 REMARK 3 L33: 0.8146 L12: -0.4036 REMARK 3 L13: -0.0374 L23: 0.0150 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: -0.0335 S13: -0.1142 REMARK 3 S21: 0.0436 S22: 0.0068 S23: 0.1509 REMARK 3 S31: 0.1234 S32: -0.1340 S33: 0.0491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.SODIUM (NA), FORMATE (FMT) AND GLYCEROL (GOL) FROM THE REMARK 3 CRYSTALLIZATION CONDITION HAVE BEEN MODELED. REMARK 4 REMARK 4 3S9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97925 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57440 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 28.388 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : 0.59500 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.00% GLYCEROL, 3.60M SODIUM FORMATE, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.84850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.84850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.84850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGEST THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 SER A 391 REMARK 465 PRO A 392 REMARK 465 ASN A 393 REMARK 465 LYS A 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 183 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 -109.52 -116.19 REMARK 500 ASN A 71 71.35 -115.78 REMARK 500 LYS A 74 -132.34 55.75 REMARK 500 TYR A 77 76.72 -157.92 REMARK 500 ALA A 105 49.70 -151.87 REMARK 500 PHE A 107 85.87 -152.22 REMARK 500 ALA A 161 72.83 -150.03 REMARK 500 ALA A 163 176.06 59.35 REMARK 500 ASP A 180 72.93 -104.94 REMARK 500 LYS A 254 -60.75 -157.48 REMARK 500 ALA A 261 48.02 -143.30 REMARK 500 TRP A 293 -119.60 -132.53 REMARK 500 LYS A 350 -47.49 -139.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 158 TYR A 159 144.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 O REMARK 620 2 THR A 49 O 82.3 REMARK 620 3 ASN A 378 OD1 86.5 135.1 REMARK 620 4 HOH A 453 O 175.4 97.8 90.2 REMARK 620 5 HOH A 524 O 92.2 85.9 138.1 92.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 77 O REMARK 620 2 LEU A 95 O 92.1 REMARK 620 3 HOH A 433 O 91.4 89.4 REMARK 620 4 HOH A 464 O 116.3 91.9 152.3 REMARK 620 5 HOH A 484 O 90.9 176.6 92.3 85.2 REMARK 620 6 HOH A 586 O 165.8 91.3 74.9 77.4 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 400 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 476 O REMARK 620 2 HOH A 477 O 86.5 REMARK 620 3 HOH A 557 O 87.8 92.3 REMARK 620 4 HOH A 878 O 89.2 82.1 173.8 REMARK 620 5 HOH A 879 O 99.1 174.1 86.5 99.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 418 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390208 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 27-394) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3S9J A 27 394 UNP A6KZ57 A6KZ57_BACV8 27 394 SEQADV 3S9J GLY A 0 UNP A6KZ57 EXPRESSION TAG SEQRES 1 A 369 GLY ALA GLY LYS GLN ASN GLU VAL GLU LEU VAL ALA GLU SEQRES 2 A 369 LYS GLN LEU ALA PHE PRO LEU ASP GLU GLN THR TYR TYR SEQRES 3 A 369 LEU SER LYS SER MSE PHE GLN PHE GLU GLU ASN GLY LYS SEQRES 4 A 369 GLU TYR LEU HIS PHE GLU ASN THR GLN LYS SER LEU TYR SEQRES 5 A 369 ASP ILE VAL ILE PHE ASP ILE GLU ASN GLN GLN ILE ALA SEQRES 6 A 369 LYS ARG ILE PRO LEU HIS LYS THR GLY PRO ASN GLY LEU SEQRES 7 A 369 PRO ALA VAL PHE GLY SER ARG PRO SER PRO ASP SER GLN SEQRES 8 A 369 TYR ILE LEU VAL ALA GLN ASN ASN ILE SER ARG LEU SER SEQRES 9 A 369 SER ILE ASN SER GLN GLY GLU ILE ILE ARG ASN TYR ASN SEQRES 10 A 369 PHE GLN THR PRO GLU GLY ARG PHE THR PRO LEU SER PHE SEQRES 11 A 369 GLY SER TYR TYR ASN ALA PRO ALA PHE ILE LYS ASP SER SEQRES 12 A 369 CYS ILE PHE LEU ARG GLN GLU ILE LEU LYS PRO ASP MSE SEQRES 13 A 369 LYS LYS GLU ASP TRP PRO ARG THR HIS MSE PHE ALA SER SEQRES 14 A 369 GLN ASP LEU ARG THR GLY GLU VAL LYS TRP ILE PRO ILE SEQRES 15 A 369 PHE TYR PRO PRO ILE PHE LYS GLU GLU TYR ASP ASN ILE SEQRES 16 A 369 ALA GLY GLY TYR GLY PHE SER TYR ASP TYR ASN TYR LYS SEQRES 17 A 369 GLU SER ARG LEU VAL CYS GLY PHE PHE GLY TYR ASP SER SEQRES 18 A 369 LEU MSE VAL THR ASP ASP LEU LYS HIS ILE ARG TRP TYR SEQRES 19 A 369 ASN ALA LYS SER ARG TYR LEU LYS SER MSE LYS PRO LYS SEQRES 20 A 369 LEU GLY ASN SER MSE GLU GLY ILE ASN ALA ILE ILE LYS SEQRES 21 A 369 LEU ASN GLU ASN PRO ARG TYR TRP HIS ILE MSE TYR ASP SEQRES 22 A 369 LYS TYR ARG ASN VAL TYR TYR ARG PHE ALA GLU MSE PRO SEQRES 23 A 369 TYR LYS LEU ALA PRO ASN GLU SER PRO TYR GLU THR PRO SEQRES 24 A 369 LYS GLY LYS GLU PHE SER VAL ILE VAL LEU ASN ALA ASP SEQRES 25 A 369 PHE GLU ILE ILE GLY GLU THR LYS PHE PRO GLY LYS LYS SEQRES 26 A 369 TYR PHE TYR LYS MSE SER PHE VAL GLY ARG GLU GLY LEU SEQRES 27 A 369 TYR ILE SER GLU ASN ASN LEU GLU ASN PRO GLN PHE ASP SEQRES 28 A 369 GLU ASN LYS LEU VAL PHE THR CYS PHE LYS ILE LYS ASN SEQRES 29 A 369 ALA SER PRO ASN LYS MODRES 3S9J MSE A 56 MET SELENOMETHIONINE MODRES 3S9J MSE A 181 MET SELENOMETHIONINE MODRES 3S9J MSE A 191 MET SELENOMETHIONINE MODRES 3S9J MSE A 248 MET SELENOMETHIONINE MODRES 3S9J MSE A 269 MET SELENOMETHIONINE MODRES 3S9J MSE A 277 MET SELENOMETHIONINE MODRES 3S9J MSE A 296 MET SELENOMETHIONINE MODRES 3S9J MSE A 310 MET SELENOMETHIONINE MODRES 3S9J MSE A 355 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 181 8 HET MSE A 191 8 HET MSE A 248 8 HET MSE A 269 8 HET MSE A 277 13 HET MSE A 296 8 HET MSE A 310 8 HET MSE A 355 8 HET NA A 400 1 HET NA A 401 1 HET NA A 402 1 HET FMT A 403 3 HET FMT A 404 3 HET FMT A 405 3 HET FMT A 406 3 HET FMT A 407 3 HET FMT A 408 3 HET FMT A 409 3 HET FMT A 410 3 HET FMT A 411 3 HET FMT A 412 3 HET FMT A 413 3 HET FMT A 414 3 HET FMT A 415 3 HET GOL A 416 6 HET GOL A 417 6 HET GOL A 418 6 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 NA 3(NA 1+) FORMUL 5 FMT 13(C H2 O2) FORMUL 18 GOL 3(C3 H8 O3) FORMUL 21 HOH *468(H2 O) HELIX 1 1 ASN A 123 ILE A 125 5 3 HELIX 2 2 LYS A 182 ARG A 188 5 7 HELIX 3 3 GLY A 279 ASN A 289 1 11 SHEET 1 A 4 VAL A 33 PRO A 44 0 SHEET 2 A 4 LYS A 379 ASN A 389 -1 O CYS A 384 N GLU A 38 SHEET 3 A 4 GLY A 362 SER A 366 -1 N LEU A 363 O PHE A 385 SHEET 4 A 4 PHE A 352 GLY A 359 -1 N PHE A 357 O TYR A 364 SHEET 1 B 4 MSE A 56 GLU A 61 0 SHEET 2 B 4 LYS A 64 ASN A 71 -1 O TYR A 66 N PHE A 59 SHEET 3 B 4 ASP A 78 ASP A 83 -1 O VAL A 80 N PHE A 69 SHEET 4 B 4 GLN A 88 PRO A 94 -1 O ILE A 93 N ILE A 79 SHEET 1 C 4 SER A 109 PRO A 111 0 SHEET 2 C 4 ILE A 118 GLN A 122 -1 O LEU A 119 N ARG A 110 SHEET 3 C 4 ARG A 127 ILE A 131 -1 O SER A 129 N VAL A 120 SHEET 4 C 4 ILE A 137 ASN A 142 -1 O TYR A 141 N LEU A 128 SHEET 1 D 4 PHE A 164 LYS A 166 0 SHEET 2 D 4 CYS A 169 ARG A 173 -1 O PHE A 171 N PHE A 164 SHEET 3 D 4 HIS A 190 ASP A 196 -1 O ALA A 193 N LEU A 172 SHEET 4 D 4 VAL A 202 PHE A 208 -1 O ILE A 207 N MSE A 191 SHEET 1 E 2 ILE A 220 GLY A 222 0 SHEET 2 E 2 GLY A 274 ASN A 275 -1 O GLY A 274 N ALA A 221 SHEET 1 F 4 PHE A 226 ASN A 231 0 SHEET 2 F 4 ARG A 236 PHE A 241 -1 O ARG A 236 N ASN A 231 SHEET 3 F 4 SER A 246 THR A 250 -1 O MSE A 248 N CYS A 239 SHEET 4 F 4 ILE A 256 ASN A 260 -1 O TYR A 259 N LEU A 247 SHEET 1 G 4 ARG A 291 ASP A 298 0 SHEET 2 G 4 VAL A 303 GLU A 309 -1 O GLU A 309 N ARG A 291 SHEET 3 G 4 PHE A 329 LEU A 334 -1 O ILE A 332 N ARG A 306 SHEET 4 G 4 ILE A 340 PHE A 346 -1 O PHE A 346 N PHE A 329 LINK C SER A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N PHE A 57 1555 1555 1.33 LINK C ASP A 180 N MSE A 181 1555 1555 1.32 LINK C MSE A 181 N LYS A 182 1555 1555 1.33 LINK C HIS A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N PHE A 192 1555 1555 1.35 LINK C LEU A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N VAL A 249 1555 1555 1.33 LINK C SER A 268 N MSE A 269 1555 1555 1.34 LINK C MSE A 269 N LYS A 270 1555 1555 1.33 LINK C SER A 276 N MSE A 277 1555 1555 1.33 LINK C MSE A 277 N GLU A 278 1555 1555 1.34 LINK C ILE A 295 N MSE A 296 1555 1555 1.33 LINK C MSE A 296 N TYR A 297 1555 1555 1.33 LINK C GLU A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N PRO A 311 1555 1555 1.35 LINK C LYS A 354 N MSE A 355 1555 1555 1.34 LINK C MSE A 355 N SER A 356 1555 1555 1.33 LINK O ASP A 46 NA NA A 401 1555 1555 2.37 LINK O THR A 49 NA NA A 401 1555 1555 2.29 LINK O TYR A 77 NA NA A 402 1555 1555 2.35 LINK O LEU A 95 NA NA A 402 1555 1555 2.28 LINK OD1 ASN A 378 NA NA A 401 1555 1555 2.60 LINK NA NA A 400 O HOH A 476 1555 1555 2.40 LINK NA NA A 400 O HOH A 477 1555 1555 2.52 LINK NA NA A 400 O HOH A 557 1555 1555 2.43 LINK NA NA A 400 O HOH A 878 1555 1555 2.33 LINK NA NA A 400 O HOH A 879 1555 1555 2.27 LINK NA NA A 401 O HOH A 453 1555 1555 2.41 LINK NA NA A 401 O HOH A 524 1555 1555 2.67 LINK NA NA A 402 O HOH A 433 1555 1555 2.35 LINK NA NA A 402 O HOH A 464 1555 1555 2.52 LINK NA NA A 402 O HOH A 484 1555 1555 2.39 LINK NA NA A 402 O HOH A 586 1555 1555 2.53 CISPEP 1 SER A 112 PRO A 113 0 9.29 SITE 1 AC1 6 HOH A 476 HOH A 477 HOH A 557 HOH A 875 SITE 2 AC1 6 HOH A 878 HOH A 879 SITE 1 AC2 5 ASP A 46 THR A 49 ASN A 378 HOH A 453 SITE 2 AC2 5 HOH A 524 SITE 1 AC3 6 TYR A 77 LEU A 95 HOH A 433 HOH A 464 SITE 2 AC3 6 HOH A 484 HOH A 586 SITE 1 AC4 2 ASP A 185 ARG A 188 SITE 1 AC5 8 GLY A 222 GLY A 223 TYR A 224 GLY A 225 SITE 2 AC5 8 PHE A 242 GOL A 416 HOH A 473 HOH A 823 SITE 1 AC6 6 LYS A 272 ASN A 289 PRO A 290 HOH A 545 SITE 2 AC6 6 HOH A 581 HOH A 656 SITE 1 AC7 6 ILE A 165 LYS A 166 TYR A 230 TYR A 232 SITE 2 AC7 6 SER A 235 HOH A 829 SITE 1 AC8 3 ASN A 132 HOH A 657 HOH A 790 SITE 1 AC9 6 ARG A 110 SER A 112 ILE A 165 TYR A 232 SITE 2 AC9 6 HOH A 580 HOH A 614 SITE 1 BC1 7 TYR A 51 ASN A 317 LYS A 325 ASN A 368 SITE 2 BC1 7 ASN A 369 LEU A 370 HOH A 766 SITE 1 BC2 4 THR A 145 PRO A 146 GLU A 147 ARG A 149 SITE 1 BC3 5 TYR A 159 PHE A 242 GOL A 416 HOH A 489 SITE 2 BC3 5 HOH A 566 SITE 1 BC4 4 THR A 98 LYS A 262 ARG A 264 LEU A 266 SITE 1 BC5 4 ASN A 123 ASN A 124 PHE A 150 LYS A 285 SITE 1 BC6 6 PRO A 104 ALA A 105 ASN A 124 ASN A 289 SITE 2 BC6 6 HOH A 542 HOH A 747 SITE 1 BC7 5 TYR A 321 GLU A 322 HOH A 629 HOH A 750 SITE 2 BC7 5 HOH A 858 SITE 1 BC8 10 ARG A 173 GLU A 175 GLY A 222 GLY A 223 SITE 2 BC8 10 TYR A 224 GLY A 225 FMT A 404 FMT A 411 SITE 3 BC8 10 HOH A 633 HOH A 808 SITE 1 BC9 9 THR A 323 PRO A 324 LYS A 325 TYR A 351 SITE 2 BC9 9 PHE A 352 TYR A 353 LYS A 354 ASN A 369 SITE 3 BC9 9 HOH A 442 SITE 1 CC1 10 PHE A 59 GLU A 61 TYR A 66 ILE A 81 SITE 2 CC1 10 LYS A 91 SER A 115 PRO A 146 GLU A 147 SITE 3 CC1 10 HOH A 648 HOH A 782 CRYST1 113.551 113.551 77.697 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008807 0.005084 0.000000 0.00000 SCALE2 0.000000 0.010169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012871 0.00000