HEADER HYDROLASE 02-JUN-11 3SAG TITLE CRYSTAL STRUCTURE OF THE HUMAN RRP6 CATALYTIC DOMAIN WITH D313N TITLE 2 MUTATION IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOSOME COMPONENT 10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 180-606; COMPND 5 SYNONYM: RRP6, AUTOANTIGEN PM/SCL 2, P100 POLYMYOSITIS-SCLERODERMA COMPND 6 OVERLAP SYNDROME-ASSOCIATED AUTOANTIGEN, POLYMYOSITIS/SCLERODERMA COMPND 7 AUTOANTIGEN 100 KDA, PM/SCL-100, POLYMYOSITIS/SCLERODERMA AUTOANTIGEN COMPND 8 2; COMPND 9 EC: 3.1.13.-; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EXOSC10, PMSCL, PMSCL2, RRP6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CP RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSMT3 SUMO FUSION KEYWDS EXORIBONUCLEASE, RNA EXOSOME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.JANUSZYK,Q.LIU,C.D.LIMA REVDAT 4 13-SEP-23 3SAG 1 REMARK SEQADV LINK REVDAT 3 03-AUG-11 3SAG 1 JRNL REVDAT 2 13-JUL-11 3SAG 1 JRNL REVDAT 1 06-JUL-11 3SAG 0 JRNL AUTH K.JANUSZYK,Q.LIU,C.D.LIMA JRNL TITL ACTIVITIES OF HUMAN RRP6 AND STRUCTURE OF THE HUMAN RRP6 JRNL TITL 2 CATALYTIC DOMAIN. JRNL REF RNA V. 17 1566 2011 JRNL REFN ISSN 1355-8382 JRNL PMID 21705430 JRNL DOI 10.1261/RNA.2763111 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1509711.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3059 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9812 REMARK 3 BIN R VALUE (WORKING SET) : 0.4010 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 508 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6305 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.93000 REMARK 3 B22 (A**2) : -14.93000 REMARK 3 B33 (A**2) : 29.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.75 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.86 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.340 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.750 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.860 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 28.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION-CDL2.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION-CDL2.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3SAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3SAF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG6000, 1.5 M SODIUM CHLORIDE, 0.4 REMARK 280 MM YTTRIUM(III) TRICHLORIDE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 222 REMARK 465 ARG A 223 REMARK 465 PRO A 224 REMARK 465 GLN A 225 REMARK 465 ASP A 226 REMARK 465 ARG A 227 REMARK 465 PRO A 228 REMARK 465 GLU A 229 REMARK 465 ASP A 230 REMARK 465 LEU A 231 REMARK 465 ASP A 232 REMARK 465 VAL A 233 REMARK 465 PRO A 234 REMARK 465 PRO A 235 REMARK 465 ALA A 236 REMARK 465 LEU A 237 REMARK 465 ALA A 238 REMARK 465 ASP A 239 REMARK 465 PHE A 240 REMARK 465 ILE A 241 REMARK 465 HIS A 242 REMARK 465 GLN A 243 REMARK 465 GLN A 244 REMARK 465 ARG A 245 REMARK 465 THR A 246 REMARK 465 GLN A 247 REMARK 465 GLN A 248 REMARK 465 VAL A 249 REMARK 465 GLU A 250 REMARK 465 GLY A 589 REMARK 465 VAL A 590 REMARK 465 LYS A 591 REMARK 465 LYS A 592 REMARK 465 SER A 593 REMARK 465 GLY A 594 REMARK 465 PRO A 595 REMARK 465 LEU A 596 REMARK 465 PRO A 597 REMARK 465 SER A 598 REMARK 465 ALA A 599 REMARK 465 GLU A 600 REMARK 465 ARG A 601 REMARK 465 LEU A 602 REMARK 465 GLU A 603 REMARK 465 ASN A 604 REMARK 465 VAL A 605 REMARK 465 LEU A 606 REMARK 465 ARG B 221 REMARK 465 GLU B 222 REMARK 465 ARG B 223 REMARK 465 PRO B 224 REMARK 465 GLN B 225 REMARK 465 ASP B 226 REMARK 465 ARG B 227 REMARK 465 PRO B 228 REMARK 465 GLU B 229 REMARK 465 ASP B 230 REMARK 465 LEU B 231 REMARK 465 ASP B 232 REMARK 465 VAL B 233 REMARK 465 PRO B 234 REMARK 465 PRO B 235 REMARK 465 ALA B 236 REMARK 465 LEU B 237 REMARK 465 ALA B 238 REMARK 465 ASP B 239 REMARK 465 PHE B 240 REMARK 465 ILE B 241 REMARK 465 HIS B 242 REMARK 465 GLN B 243 REMARK 465 GLN B 244 REMARK 465 ARG B 245 REMARK 465 THR B 246 REMARK 465 GLN B 247 REMARK 465 GLN B 248 REMARK 465 VAL B 249 REMARK 465 GLU B 250 REMARK 465 GLY B 589 REMARK 465 VAL B 590 REMARK 465 LYS B 591 REMARK 465 LYS B 592 REMARK 465 SER B 593 REMARK 465 GLY B 594 REMARK 465 PRO B 595 REMARK 465 LEU B 596 REMARK 465 PRO B 597 REMARK 465 SER B 598 REMARK 465 ALA B 599 REMARK 465 GLU B 600 REMARK 465 ARG B 601 REMARK 465 LEU B 602 REMARK 465 GLU B 603 REMARK 465 ASN B 604 REMARK 465 VAL B 605 REMARK 465 LEU B 606 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 220 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 499 CG CD CE NZ REMARK 470 LYS B 500 CG CD CE NZ REMARK 470 HIS B 501 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 489 Y YT3 B 2 1.63 REMARK 500 Y YT3 B 2 O HOH B 128 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 200 137.20 -39.19 REMARK 500 PRO A 213 126.26 -37.72 REMARK 500 ARG A 220 16.74 -59.41 REMARK 500 HIS A 264 39.09 -94.85 REMARK 500 PRO A 277 127.89 -34.09 REMARK 500 SER A 318 -14.80 -146.92 REMARK 500 ARG A 320 50.10 -102.59 REMARK 500 ASN A 385 79.34 79.75 REMARK 500 THR A 441 -17.27 -143.41 REMARK 500 PRO A 463 33.59 -93.25 REMARK 500 LYS A 499 49.58 38.94 REMARK 500 HIS A 501 74.16 50.18 REMARK 500 LEU A 532 103.51 -174.69 REMARK 500 ILE A 566 -39.37 -36.90 REMARK 500 PRO B 200 140.71 -37.71 REMARK 500 MET B 253 -7.71 -52.33 REMARK 500 PRO B 277 137.73 -32.48 REMARK 500 SER B 292 -0.53 -144.24 REMARK 500 ARG B 320 38.35 -97.18 REMARK 500 ASN B 385 86.04 85.34 REMARK 500 ASN B 416 75.68 -109.99 REMARK 500 LYS B 499 -4.48 59.67 REMARK 500 LEU B 532 105.34 -167.33 REMARK 500 ASN B 534 -70.36 -35.67 REMARK 500 ILE B 566 -38.01 -39.13 REMARK 500 SER B 584 31.79 -83.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 A 1 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 73 O REMARK 620 2 HOH A 104 O 161.8 REMARK 620 3 HOH A 116 O 126.2 63.2 REMARK 620 4 ASP A 488 OD2 83.9 92.6 146.8 REMARK 620 5 ASP A 488 OD1 124.3 50.9 109.5 41.8 REMARK 620 6 GLU A 489 OE2 115.0 82.7 67.1 88.7 81.7 REMARK 620 7 GLU A 489 OE1 58.6 137.3 108.3 73.3 103.9 57.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 A 3 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 28 O REMARK 620 2 ASP A 404 OD1 99.9 REMARK 620 3 ASP A 440 OD1 108.7 139.9 REMARK 620 4 ASP A 440 OD2 86.5 166.6 45.5 REMARK 620 5 HOH A 630 O 60.2 68.6 101.8 124.5 REMARK 620 6 HOH A 632 O 155.1 99.0 64.6 71.9 143.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 33 O REMARK 620 2 HOH B 38 O 158.8 REMARK 620 3 HOH B 40 O 99.1 94.6 REMARK 620 4 ASN B 313 OD1 69.4 98.5 76.3 REMARK 620 5 HOH B 611 O 134.4 62.0 87.6 153.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 B 2 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 43 O REMARK 620 2 ASP B 488 OD1 129.0 REMARK 620 3 GLU B 489 OE1 143.3 64.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SAF RELATED DB: PDB REMARK 900 RELATED ID: 3SAH RELATED DB: PDB DBREF 3SAG A 180 606 UNP Q01780 EXOSX_HUMAN 180 606 DBREF 3SAG B 180 606 UNP Q01780 EXOSX_HUMAN 180 606 SEQADV 3SAG SER A 179 UNP Q01780 EXPRESSION TAG SEQADV 3SAG ASN A 313 UNP Q01780 ASP 313 ENGINEERED MUTATION SEQADV 3SAG SER B 179 UNP Q01780 EXPRESSION TAG SEQADV 3SAG ASN B 313 UNP Q01780 ASP 313 ENGINEERED MUTATION SEQRES 1 A 428 SER ILE ILE ARG PRO GLN LEU LYS PHE ARG GLU LYS ILE SEQRES 2 A 428 ASP ASN SER ASN THR PRO PHE LEU PRO LYS ILE PHE ILE SEQRES 3 A 428 LYS PRO ASN ALA GLN LYS PRO LEU PRO GLN ALA LEU SER SEQRES 4 A 428 LYS GLU ARG ARG GLU ARG PRO GLN ASP ARG PRO GLU ASP SEQRES 5 A 428 LEU ASP VAL PRO PRO ALA LEU ALA ASP PHE ILE HIS GLN SEQRES 6 A 428 GLN ARG THR GLN GLN VAL GLU GLN ASP MET PHE ALA HIS SEQRES 7 A 428 PRO TYR GLN TYR GLU LEU ASN HIS PHE THR PRO ALA ASP SEQRES 8 A 428 ALA VAL LEU GLN LYS PRO GLN PRO GLN LEU TYR ARG PRO SEQRES 9 A 428 ILE GLU GLU THR PRO CYS HIS PHE ILE SER SER LEU ASP SEQRES 10 A 428 GLU LEU VAL GLU LEU ASN GLU LYS LEU LEU ASN CYS GLN SEQRES 11 A 428 GLU PHE ALA VAL ASN LEU GLU HIS HIS SER TYR ARG SER SEQRES 12 A 428 PHE LEU GLY LEU THR CYS LEU MET GLN ILE SER THR ARG SEQRES 13 A 428 THR GLU ASP PHE ILE ILE ASP THR LEU GLU LEU ARG SER SEQRES 14 A 428 ASP MET TYR ILE LEU ASN GLU SER LEU THR ASP PRO ALA SEQRES 15 A 428 ILE VAL LYS VAL PHE HIS GLY ALA ASP SER ASP ILE GLU SEQRES 16 A 428 TRP LEU GLN LYS ASP PHE GLY LEU TYR VAL VAL ASN MET SEQRES 17 A 428 PHE ASP THR HIS GLN ALA ALA ARG LEU LEU ASN LEU GLY SEQRES 18 A 428 ARG HIS SER LEU ASP HIS LEU LEU LYS LEU TYR CYS ASN SEQRES 19 A 428 VAL ASP SER ASN LYS GLN TYR GLN LEU ALA ASP TRP ARG SEQRES 20 A 428 ILE ARG PRO LEU PRO GLU GLU MET LEU SER TYR ALA ARG SEQRES 21 A 428 ASP ASP THR HIS TYR LEU LEU TYR ILE TYR ASP LYS MET SEQRES 22 A 428 ARG LEU GLU MET TRP GLU ARG GLY ASN GLY GLN PRO VAL SEQRES 23 A 428 GLN LEU GLN VAL VAL TRP GLN ARG SER ARG ASP ILE CYS SEQRES 24 A 428 LEU LYS LYS PHE ILE LYS PRO ILE PHE THR ASP GLU SER SEQRES 25 A 428 TYR LEU GLU LEU TYR ARG LYS GLN LYS LYS HIS LEU ASN SEQRES 26 A 428 THR GLN GLN LEU THR ALA PHE GLN LEU LEU PHE ALA TRP SEQRES 27 A 428 ARG ASP LYS THR ALA ARG ARG GLU ASP GLU SER TYR GLY SEQRES 28 A 428 TYR VAL LEU PRO ASN HIS MET MET LEU LYS ILE ALA GLU SEQRES 29 A 428 GLU LEU PRO LYS GLU PRO GLN GLY ILE ILE ALA CYS CYS SEQRES 30 A 428 ASN PRO VAL PRO PRO LEU VAL ARG GLN GLN ILE ASN GLU SEQRES 31 A 428 MET HIS LEU LEU ILE GLN GLN ALA ARG GLU MET PRO LEU SEQRES 32 A 428 LEU LYS SER GLU VAL ALA ALA GLY VAL LYS LYS SER GLY SEQRES 33 A 428 PRO LEU PRO SER ALA GLU ARG LEU GLU ASN VAL LEU SEQRES 1 B 428 SER ILE ILE ARG PRO GLN LEU LYS PHE ARG GLU LYS ILE SEQRES 2 B 428 ASP ASN SER ASN THR PRO PHE LEU PRO LYS ILE PHE ILE SEQRES 3 B 428 LYS PRO ASN ALA GLN LYS PRO LEU PRO GLN ALA LEU SER SEQRES 4 B 428 LYS GLU ARG ARG GLU ARG PRO GLN ASP ARG PRO GLU ASP SEQRES 5 B 428 LEU ASP VAL PRO PRO ALA LEU ALA ASP PHE ILE HIS GLN SEQRES 6 B 428 GLN ARG THR GLN GLN VAL GLU GLN ASP MET PHE ALA HIS SEQRES 7 B 428 PRO TYR GLN TYR GLU LEU ASN HIS PHE THR PRO ALA ASP SEQRES 8 B 428 ALA VAL LEU GLN LYS PRO GLN PRO GLN LEU TYR ARG PRO SEQRES 9 B 428 ILE GLU GLU THR PRO CYS HIS PHE ILE SER SER LEU ASP SEQRES 10 B 428 GLU LEU VAL GLU LEU ASN GLU LYS LEU LEU ASN CYS GLN SEQRES 11 B 428 GLU PHE ALA VAL ASN LEU GLU HIS HIS SER TYR ARG SER SEQRES 12 B 428 PHE LEU GLY LEU THR CYS LEU MET GLN ILE SER THR ARG SEQRES 13 B 428 THR GLU ASP PHE ILE ILE ASP THR LEU GLU LEU ARG SER SEQRES 14 B 428 ASP MET TYR ILE LEU ASN GLU SER LEU THR ASP PRO ALA SEQRES 15 B 428 ILE VAL LYS VAL PHE HIS GLY ALA ASP SER ASP ILE GLU SEQRES 16 B 428 TRP LEU GLN LYS ASP PHE GLY LEU TYR VAL VAL ASN MET SEQRES 17 B 428 PHE ASP THR HIS GLN ALA ALA ARG LEU LEU ASN LEU GLY SEQRES 18 B 428 ARG HIS SER LEU ASP HIS LEU LEU LYS LEU TYR CYS ASN SEQRES 19 B 428 VAL ASP SER ASN LYS GLN TYR GLN LEU ALA ASP TRP ARG SEQRES 20 B 428 ILE ARG PRO LEU PRO GLU GLU MET LEU SER TYR ALA ARG SEQRES 21 B 428 ASP ASP THR HIS TYR LEU LEU TYR ILE TYR ASP LYS MET SEQRES 22 B 428 ARG LEU GLU MET TRP GLU ARG GLY ASN GLY GLN PRO VAL SEQRES 23 B 428 GLN LEU GLN VAL VAL TRP GLN ARG SER ARG ASP ILE CYS SEQRES 24 B 428 LEU LYS LYS PHE ILE LYS PRO ILE PHE THR ASP GLU SER SEQRES 25 B 428 TYR LEU GLU LEU TYR ARG LYS GLN LYS LYS HIS LEU ASN SEQRES 26 B 428 THR GLN GLN LEU THR ALA PHE GLN LEU LEU PHE ALA TRP SEQRES 27 B 428 ARG ASP LYS THR ALA ARG ARG GLU ASP GLU SER TYR GLY SEQRES 28 B 428 TYR VAL LEU PRO ASN HIS MET MET LEU LYS ILE ALA GLU SEQRES 29 B 428 GLU LEU PRO LYS GLU PRO GLN GLY ILE ILE ALA CYS CYS SEQRES 30 B 428 ASN PRO VAL PRO PRO LEU VAL ARG GLN GLN ILE ASN GLU SEQRES 31 B 428 MET HIS LEU LEU ILE GLN GLN ALA ARG GLU MET PRO LEU SEQRES 32 B 428 LEU LYS SER GLU VAL ALA ALA GLY VAL LYS LYS SER GLY SEQRES 33 B 428 PRO LEU PRO SER ALA GLU ARG LEU GLU ASN VAL LEU HET YT3 A 1 1 HET YT3 A 3 1 HET MG B 1 1 HET YT3 B 2 1 HETNAM YT3 YTTRIUM (III) ION HETNAM MG MAGNESIUM ION FORMUL 3 YT3 3(Y 3+) FORMUL 5 MG MG 2+ FORMUL 7 HOH *228(H2 O) HELIX 1 1 PRO A 213 SER A 217 5 5 HELIX 2 2 TYR A 258 HIS A 264 1 7 HELIX 3 3 ALA A 268 GLN A 273 1 6 HELIX 4 4 PRO A 282 THR A 286 5 5 HELIX 5 5 SER A 293 LEU A 305 1 13 HELIX 6 6 ASP A 348 ILE A 351 5 4 HELIX 7 7 LEU A 352 THR A 357 1 6 HELIX 8 8 ALA A 368 PHE A 379 1 12 HELIX 9 9 THR A 389 LEU A 395 1 7 HELIX 10 10 SER A 402 ASN A 412 1 11 HELIX 11 11 PRO A 430 TYR A 443 1 14 HELIX 12 12 TYR A 443 GLU A 457 1 15 HELIX 13 13 PRO A 463 LEU A 478 1 16 HELIX 14 14 THR A 487 GLN A 498 1 12 HELIX 15 15 ASN A 503 GLU A 524 1 22 HELIX 16 16 SER A 527 LEU A 532 1 6 HELIX 17 17 PRO A 533 LEU A 544 1 12 HELIX 18 18 GLU A 547 CYS A 555 1 9 HELIX 19 19 PRO A 559 GLN A 565 1 7 HELIX 20 20 GLN A 565 GLU A 578 1 14 HELIX 21 21 LEU A 582 ALA A 588 1 7 HELIX 22 22 ARG B 182 PHE B 187 5 6 HELIX 23 23 PRO B 213 SER B 217 5 5 HELIX 24 24 TYR B 258 HIS B 264 1 7 HELIX 25 25 ALA B 268 GLN B 273 1 6 HELIX 26 26 SER B 293 LEU B 305 1 13 HELIX 27 27 ASP B 348 ILE B 351 5 4 HELIX 28 28 LEU B 352 THR B 357 1 6 HELIX 29 29 ALA B 368 GLY B 380 1 13 HELIX 30 30 THR B 389 LEU B 395 1 7 HELIX 31 31 SER B 402 CYS B 411 1 10 HELIX 32 32 PRO B 430 TYR B 443 1 14 HELIX 33 33 TYR B 443 GLY B 459 1 17 HELIX 34 34 VAL B 464 LEU B 478 1 15 HELIX 35 35 ASP B 488 ARG B 496 1 9 HELIX 36 36 ASN B 503 ASP B 525 1 23 HELIX 37 37 SER B 527 LEU B 532 1 6 HELIX 38 38 PRO B 533 LEU B 544 1 12 HELIX 39 39 GLU B 547 CYS B 555 1 9 HELIX 40 40 PRO B 559 GLN B 565 1 7 HELIX 41 41 GLN B 565 MET B 579 1 15 HELIX 42 42 LEU B 582 VAL B 586 5 5 SHEET 1 A 6 CYS A 288 ILE A 291 0 SHEET 2 A 6 ASP A 337 ILE A 340 1 O ILE A 339 N ILE A 291 SHEET 3 A 6 LEU A 325 SER A 332 -1 N ILE A 331 O PHE A 338 SHEET 4 A 6 GLU A 309 HIS A 317 -1 N ASN A 313 O GLN A 330 SHEET 5 A 6 VAL A 362 PHE A 365 1 O VAL A 364 N PHE A 310 SHEET 6 A 6 MET A 386 ASP A 388 1 O PHE A 387 N LYS A 363 SHEET 1 B 6 CYS B 288 ILE B 291 0 SHEET 2 B 6 ASP B 337 ILE B 340 1 O ILE B 339 N ILE B 291 SHEET 3 B 6 LEU B 325 SER B 332 -1 N MET B 329 O ILE B 340 SHEET 4 B 6 GLU B 309 HIS B 317 -1 N HIS B 317 O LEU B 325 SHEET 5 B 6 VAL B 362 PHE B 365 1 O VAL B 364 N VAL B 312 SHEET 6 B 6 MET B 386 ASP B 388 1 O PHE B 387 N LYS B 363 LINK Y YT3 A 1 O HOH A 73 1555 1555 2.95 LINK Y YT3 A 1 O HOH A 104 1555 1555 2.83 LINK Y YT3 A 1 O HOH A 116 1555 1555 2.74 LINK Y YT3 A 1 OD2 ASP A 488 1555 1555 2.55 LINK Y YT3 A 1 OD1 ASP A 488 1555 1555 3.29 LINK Y YT3 A 1 OE2 GLU A 489 1555 1555 2.21 LINK Y YT3 A 1 OE1 GLU A 489 1555 1555 2.37 LINK Y YT3 A 3 O HOH A 28 1555 1555 2.64 LINK Y YT3 A 3 OD1 ASP A 404 1555 1555 2.93 LINK Y YT3 A 3 OD1 ASP A 440 1555 1555 2.28 LINK Y YT3 A 3 OD2 ASP A 440 1555 1555 3.08 LINK Y YT3 A 3 O HOH A 630 1555 1555 2.87 LINK Y YT3 A 3 O HOH A 632 1555 1555 2.87 LINK MG MG B 1 O HOH B 33 1555 1555 2.30 LINK MG MG B 1 O HOH B 38 1555 1555 2.84 LINK MG MG B 1 O HOH B 40 1555 1555 2.37 LINK MG MG B 1 OD1 ASN B 313 1555 1555 2.67 LINK MG MG B 1 O HOH B 611 1555 1555 2.94 LINK Y YT3 B 2 O HOH B 43 1555 1555 2.93 LINK Y YT3 B 2 OD1 ASP B 488 1555 1555 2.66 LINK Y YT3 B 2 OE1 GLU B 489 1555 1555 2.89 CISPEP 1 ARG A 427 PRO A 428 0 0.16 CISPEP 2 ASN A 556 PRO A 557 0 0.03 CISPEP 3 ARG B 427 PRO B 428 0 -0.31 CISPEP 4 ASN B 556 PRO B 557 0 0.14 SITE 1 AC1 7 HOH A 73 HOH A 104 HOH A 116 GLU A 296 SITE 2 AC1 7 GLU A 299 ASP A 488 GLU A 489 SITE 1 AC2 5 HOH A 28 ASP A 404 ASP A 440 HOH A 630 SITE 2 AC2 5 HOH A 632 SITE 1 AC3 6 HOH B 33 HOH B 38 HOH B 40 ASN B 313 SITE 2 AC3 6 ASP B 371 HOH B 611 SITE 1 AC4 6 HOH B 43 HOH B 128 GLU B 296 GLU B 299 SITE 2 AC4 6 ASP B 488 GLU B 489 CRYST1 138.800 138.800 60.300 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016584 0.00000