HEADER PROTEIN BINDING 03-JUN-11 3SB4 TITLE CRYSTAL STRUCTURE OF A LEUCINE-RICH REPEAT PROTEIN (BT_1240) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.99 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL LEUCINE RICH REPEAT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 22-349; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_1240; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS LRR, RIGHT-HANDED BETA-ALPHA SUPERHELIX, LEUCINE-RICH REPEAT, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3SB4 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 3SB4 1 REMARK REVDAT 4 24-DEC-14 3SB4 1 TITLE REVDAT 3 23-NOV-11 3SB4 1 TITLE REVDAT 2 13-JUL-11 3SB4 1 TITLE REVDAT 1 22-JUN-11 3SB4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL LEUCINE RICH REPEAT JRNL TITL 2 PROTEIN (BT_1240) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 JRNL TITL 3 AT 1.99 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 52044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2653 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3635 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1795 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3476 REMARK 3 BIN R VALUE (WORKING SET) : 0.1777 REMARK 3 BIN FREE R VALUE : 0.2198 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 159 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5110 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 417 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.28620 REMARK 3 B22 (A**2) : 1.61670 REMARK 3 B33 (A**2) : -5.90290 REMARK 3 B12 (A**2) : 5.67070 REMARK 3 B13 (A**2) : -2.63920 REMARK 3 B23 (A**2) : -8.62830 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5420 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7314 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2568 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 125 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 779 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5420 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 725 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6931 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.73 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|0 - A|196} REMARK 3 ORIGIN FOR THE GROUP (A): 25.4759 -7.9592 21.4514 REMARK 3 T TENSOR REMARK 3 T11: -0.0206 T22: -0.0230 REMARK 3 T33: -0.1435 T12: -0.0393 REMARK 3 T13: -0.0106 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.7527 L22: 2.3397 REMARK 3 L33: 1.8827 L12: 0.5720 REMARK 3 L13: -0.7684 L23: -0.5999 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: 0.0554 S13: -0.0770 REMARK 3 S21: -0.1944 S22: -0.0009 S23: -0.0875 REMARK 3 S31: 0.1875 S32: 0.0199 S33: 0.0833 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|197 - A|349} REMARK 3 ORIGIN FOR THE GROUP (A): 8.9466 0.3513 46.7279 REMARK 3 T TENSOR REMARK 3 T11: -0.1095 T22: -0.0917 REMARK 3 T33: 0.0339 T12: -0.0100 REMARK 3 T13: 0.0105 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.4405 L22: 1.2987 REMARK 3 L33: 2.5985 L12: 0.2741 REMARK 3 L13: -0.0688 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: 0.1764 S13: 0.0612 REMARK 3 S21: -0.1046 S22: 0.0135 S23: 0.0733 REMARK 3 S31: -0.1166 S32: -0.1592 S33: 0.0627 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {B|22 - B|196} REMARK 3 ORIGIN FOR THE GROUP (A): 29.7218 -34.0463 43.2766 REMARK 3 T TENSOR REMARK 3 T11: -0.0176 T22: -0.0955 REMARK 3 T33: -0.0604 T12: -0.0007 REMARK 3 T13: 0.0367 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.0975 L22: 2.2723 REMARK 3 L33: 1.3550 L12: 1.1105 REMARK 3 L13: -0.0197 L23: -0.4498 REMARK 3 S TENSOR REMARK 3 S11: -0.1516 S12: 0.1810 S13: -0.0173 REMARK 3 S21: -0.2228 S22: 0.0990 S23: 0.0217 REMARK 3 S31: 0.1139 S32: -0.0120 S33: 0.0526 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|197 - B|349} REMARK 3 ORIGIN FOR THE GROUP (A): 42.2721 -14.3019 62.9648 REMARK 3 T TENSOR REMARK 3 T11: -0.0763 T22: -0.0339 REMARK 3 T33: -0.0332 T12: -0.0180 REMARK 3 T13: 0.0051 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 1.4282 L22: 2.0738 REMARK 3 L33: 1.3035 L12: -0.3347 REMARK 3 L13: -0.0902 L23: 0.1984 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: -0.1172 S13: -0.0845 REMARK 3 S21: 0.2006 S22: 0.0168 S23: -0.1429 REMARK 3 S31: 0.0836 S32: 0.0379 S33: 0.0010 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. GLYCEROL (GOL) AND PEG (PG4) FROM THE REMARK 3 CRYSTALLIZATION CONDITIONS HAVE BEEN MODELED IN THE STRUCTURE. REMARK 3 4. THE REFINEMENT WAS RESTRAINED AGAINST MAD PHASES. 5. NCS REMARK 3 RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REMARK 3 REPRESENTATION (-AUTONCS). REMARK 4 REMARK 4 3SB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97999,0.97959 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52132 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 27.817 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R MERGE, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00% GLYCEROL, 0.0400M KH2PO4, REMARK 280 16.00% PEG-8000, NO BUFFER, PH NONE, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY PROVIDES REMARK 300 SUPPORTING EVIDENCE THAT THE MONOMER IS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CD CE NZ REMARK 470 LYS A 87 NZ REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ASN A 114 CB CG OD1 ND2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 GLN A 268 CD OE1 NE2 REMARK 470 LYS A 270 CE NZ REMARK 470 LYS A 348 CD CE NZ REMARK 470 LYS B 131 CE NZ REMARK 470 LYS B 154 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 22 -75.43 -38.49 REMARK 500 GLU A 67 -149.75 -112.58 REMARK 500 ASP A 137 127.79 -39.50 REMARK 500 ARG A 186 -6.98 81.48 REMARK 500 LYS A 255 42.17 -87.27 REMARK 500 LYS A 255 43.34 -88.16 REMARK 500 GLN A 268 55.99 -100.21 REMARK 500 PHE A 310 125.24 -31.45 REMARK 500 GLU A 335 47.23 37.13 REMARK 500 GLU B 67 -147.12 -111.98 REMARK 500 ASP B 137 128.09 -39.89 REMARK 500 VAL B 168 -50.31 -121.98 REMARK 500 ARG B 186 -5.15 78.93 REMARK 500 LYS B 255 43.46 -90.35 REMARK 500 PHE B 310 125.90 -30.38 REMARK 500 GLU B 335 47.75 38.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 363 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 417241 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 GLY 0 FOLLOWED BY RESIDUES 22-349 OF THE TARGET SEQUENCE. DBREF 3SB4 A 22 349 UNP Q8A8C7 Q8A8C7_BACTN 22 349 DBREF 3SB4 B 22 349 UNP Q8A8C7 Q8A8C7_BACTN 22 349 SEQADV 3SB4 GLY A 0 UNP Q8A8C7 EXPRESSION TAG SEQADV 3SB4 GLY B 0 UNP Q8A8C7 EXPRESSION TAG SEQRES 1 A 329 GLY GLN VAL SER LYS THR TYR TYR VAL SER LYS PRO GLY SEQRES 2 A 329 THR LEU ILE SER MSE MSE THR GLU GLU GLU ALA ASN SER SEQRES 3 A 329 ILE THR HIS LEU THR LEU THR GLY LYS LEU ASN ALA GLU SEQRES 4 A 329 ASP PHE ARG HIS LEU ARG ASP GLU PHE PRO SER LEU LYS SEQRES 5 A 329 VAL LEU ASP ILE SER ASN ALA GLU ILE LYS MSE TYR SER SEQRES 6 A 329 GLY LYS ALA GLY THR TYR PRO ASN GLY LYS PHE TYR ILE SEQRES 7 A 329 TYR MSE ALA ASN PHE VAL PRO ALA TYR ALA PHE SER ASN SEQRES 8 A 329 VAL VAL ASN GLY VAL THR LYS GLY LYS GLN THR LEU GLU SEQRES 9 A 329 LYS VAL ILE LEU SER GLU LYS ILE LYS ASN ILE GLU ASP SEQRES 10 A 329 ALA ALA PHE LYS GLY CYS ASP ASN LEU LYS ILE CYS GLN SEQRES 11 A 329 ILE ARG LYS LYS THR ALA PRO ASN LEU LEU PRO GLU ALA SEQRES 12 A 329 LEU ALA ASP SER VAL THR ALA ILE PHE ILE PRO LEU GLY SEQRES 13 A 329 SER SER ASP ALA TYR ARG PHE LYS ASN ARG TRP GLU HIS SEQRES 14 A 329 PHE ALA PHE ILE GLU GLY GLU PRO LEU GLU THR THR ILE SEQRES 15 A 329 GLN VAL GLY ALA MSE GLY LYS LEU GLU ASP GLU ILE MSE SEQRES 16 A 329 LYS ALA GLY LEU GLN PRO ARG ASP ILE ASN PHE LEU THR SEQRES 17 A 329 ILE GLU GLY LYS LEU ASP ASN ALA ASP PHE LYS LEU ILE SEQRES 18 A 329 ARG ASP TYR MSE PRO ASN LEU VAL SER LEU ASP ILE SER SEQRES 19 A 329 LYS THR ASN ALA THR THR ILE PRO ASP PHE THR PHE ALA SEQRES 20 A 329 GLN LYS LYS TYR LEU LEU LYS ILE LYS LEU PRO HIS ASN SEQRES 21 A 329 LEU LYS THR ILE GLY GLN ARG VAL PHE SER ASN CYS GLY SEQRES 22 A 329 ARG LEU ALA GLY THR LEU GLU LEU PRO ALA SER VAL THR SEQRES 23 A 329 ALA ILE GLU PHE GLY ALA PHE MSE GLY CYS ASP ASN LEU SEQRES 24 A 329 ARG TYR VAL LEU ALA THR GLY ASP LYS ILE THR THR LEU SEQRES 25 A 329 GLY ASP GLU LEU PHE GLY ASN GLY VAL PRO SER LYS LEU SEQRES 26 A 329 ILE TYR LYS LYS SEQRES 1 B 329 GLY GLN VAL SER LYS THR TYR TYR VAL SER LYS PRO GLY SEQRES 2 B 329 THR LEU ILE SER MSE MSE THR GLU GLU GLU ALA ASN SER SEQRES 3 B 329 ILE THR HIS LEU THR LEU THR GLY LYS LEU ASN ALA GLU SEQRES 4 B 329 ASP PHE ARG HIS LEU ARG ASP GLU PHE PRO SER LEU LYS SEQRES 5 B 329 VAL LEU ASP ILE SER ASN ALA GLU ILE LYS MSE TYR SER SEQRES 6 B 329 GLY LYS ALA GLY THR TYR PRO ASN GLY LYS PHE TYR ILE SEQRES 7 B 329 TYR MSE ALA ASN PHE VAL PRO ALA TYR ALA PHE SER ASN SEQRES 8 B 329 VAL VAL ASN GLY VAL THR LYS GLY LYS GLN THR LEU GLU SEQRES 9 B 329 LYS VAL ILE LEU SER GLU LYS ILE LYS ASN ILE GLU ASP SEQRES 10 B 329 ALA ALA PHE LYS GLY CYS ASP ASN LEU LYS ILE CYS GLN SEQRES 11 B 329 ILE ARG LYS LYS THR ALA PRO ASN LEU LEU PRO GLU ALA SEQRES 12 B 329 LEU ALA ASP SER VAL THR ALA ILE PHE ILE PRO LEU GLY SEQRES 13 B 329 SER SER ASP ALA TYR ARG PHE LYS ASN ARG TRP GLU HIS SEQRES 14 B 329 PHE ALA PHE ILE GLU GLY GLU PRO LEU GLU THR THR ILE SEQRES 15 B 329 GLN VAL GLY ALA MSE GLY LYS LEU GLU ASP GLU ILE MSE SEQRES 16 B 329 LYS ALA GLY LEU GLN PRO ARG ASP ILE ASN PHE LEU THR SEQRES 17 B 329 ILE GLU GLY LYS LEU ASP ASN ALA ASP PHE LYS LEU ILE SEQRES 18 B 329 ARG ASP TYR MSE PRO ASN LEU VAL SER LEU ASP ILE SER SEQRES 19 B 329 LYS THR ASN ALA THR THR ILE PRO ASP PHE THR PHE ALA SEQRES 20 B 329 GLN LYS LYS TYR LEU LEU LYS ILE LYS LEU PRO HIS ASN SEQRES 21 B 329 LEU LYS THR ILE GLY GLN ARG VAL PHE SER ASN CYS GLY SEQRES 22 B 329 ARG LEU ALA GLY THR LEU GLU LEU PRO ALA SER VAL THR SEQRES 23 B 329 ALA ILE GLU PHE GLY ALA PHE MSE GLY CYS ASP ASN LEU SEQRES 24 B 329 ARG TYR VAL LEU ALA THR GLY ASP LYS ILE THR THR LEU SEQRES 25 B 329 GLY ASP GLU LEU PHE GLY ASN GLY VAL PRO SER LYS LEU SEQRES 26 B 329 ILE TYR LYS LYS MODRES 3SB4 MSE A 38 MET SELENOMETHIONINE MODRES 3SB4 MSE A 39 MET SELENOMETHIONINE MODRES 3SB4 MSE A 83 MET SELENOMETHIONINE MODRES 3SB4 MSE A 100 MET SELENOMETHIONINE MODRES 3SB4 MSE A 207 MET SELENOMETHIONINE MODRES 3SB4 MSE A 215 MET SELENOMETHIONINE MODRES 3SB4 MSE A 245 MET SELENOMETHIONINE MODRES 3SB4 MSE A 314 MET SELENOMETHIONINE MODRES 3SB4 MSE B 38 MET SELENOMETHIONINE MODRES 3SB4 MSE B 39 MET SELENOMETHIONINE MODRES 3SB4 MSE B 83 MET SELENOMETHIONINE MODRES 3SB4 MSE B 100 MET SELENOMETHIONINE MODRES 3SB4 MSE B 207 MET SELENOMETHIONINE MODRES 3SB4 MSE B 215 MET SELENOMETHIONINE MODRES 3SB4 MSE B 245 MET SELENOMETHIONINE MODRES 3SB4 MSE B 314 MET SELENOMETHIONINE HET MSE A 38 8 HET MSE A 39 16 HET MSE A 83 8 HET MSE A 100 8 HET MSE A 207 8 HET MSE A 215 16 HET MSE A 245 13 HET MSE A 314 8 HET MSE B 38 8 HET MSE B 39 16 HET MSE B 83 8 HET MSE B 100 13 HET MSE B 207 8 HET MSE B 215 13 HET MSE B 245 16 HET MSE B 314 16 HET GOL A 351 6 HET GOL A 353 6 HET GOL A 354 6 HET GOL A 355 6 HET GOL A 357 6 HET GOL A 358 6 HET GOL A 359 6 HET GOL A 361 6 HET GOL A 362 6 HET GOL B 350 6 HET GOL B 352 6 HET GOL B 356 6 HET GOL B 360 6 HET PG4 B 363 13 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 GOL 13(C3 H8 O3) FORMUL 16 PG4 C8 H18 O5 FORMUL 17 HOH *417(H2 O) HELIX 1 1 THR A 34 MSE A 39 5 6 HELIX 2 2 THR A 40 ILE A 47 1 8 HELIX 3 3 ASN A 57 GLU A 67 1 11 HELIX 4 4 TYR A 91 LYS A 95 5 5 HELIX 5 5 SER A 178 PHE A 183 1 6 HELIX 6 6 LYS A 209 ALA A 217 1 9 HELIX 7 7 GLN A 220 ILE A 224 5 5 HELIX 8 8 ASP A 234 MSE A 245 1 12 HELIX 9 9 THR B 34 MSE B 39 5 6 HELIX 10 10 THR B 40 ILE B 47 1 8 HELIX 11 11 ASN B 57 GLU B 67 1 11 HELIX 12 12 TYR B 91 LYS B 95 5 5 HELIX 13 13 SER B 178 PHE B 183 1 6 HELIX 14 14 LYS B 209 ALA B 217 1 9 HELIX 15 15 GLN B 220 ILE B 224 5 5 HELIX 16 16 ASP B 234 MSE B 245 1 12 SHEET 1 A 7 SER A 24 VAL A 29 0 SHEET 2 A 7 HIS A 49 LEU A 56 1 O LYS A 55 N VAL A 29 SHEET 3 A 7 VAL A 73 ILE A 81 1 O GLU A 80 N LEU A 56 SHEET 4 A 7 LYS A 125 LEU A 128 1 O ILE A 127 N ILE A 76 SHEET 5 A 7 ILE A 148 ILE A 151 1 O GLN A 150 N VAL A 126 SHEET 6 A 7 ALA A 170 ILE A 173 1 O PHE A 172 N ILE A 151 SHEET 7 A 7 PHE A 192 GLU A 194 1 O ILE A 193 N ILE A 171 SHEET 1 B 2 TYR A 84 GLY A 86 0 SHEET 2 B 2 TYR A 97 TYR A 99 -1 O TYR A 99 N TYR A 84 SHEET 1 C 3 PHE A 103 VAL A 104 0 SHEET 2 C 3 ASN A 134 ILE A 135 1 O ASN A 134 N VAL A 104 SHEET 3 C 3 ASN A 158 LEU A 159 1 O ASN A 158 N ILE A 135 SHEET 1 D 2 SER A 110 VAL A 113 0 SHEET 2 D 2 VAL A 116 GLY A 119 -1 O VAL A 116 N VAL A 113 SHEET 1 E 4 GLU A 199 VAL A 204 0 SHEET 2 E 4 PHE A 226 GLY A 231 1 O THR A 228 N ILE A 202 SHEET 3 E 4 SER A 250 ASP A 252 1 O ASP A 252 N LEU A 227 SHEET 4 E 4 LYS A 274 LYS A 276 1 O LYS A 274 N LEU A 251 SHEET 1 F 4 THR A 260 ILE A 261 0 SHEET 2 F 4 THR A 283 ILE A 284 1 O THR A 283 N ILE A 261 SHEET 3 F 4 ALA A 307 ILE A 308 1 O ALA A 307 N ILE A 284 SHEET 4 F 4 THR A 331 LEU A 332 1 O THR A 331 N ILE A 308 SHEET 1 G 3 GLY A 297 LEU A 301 0 SHEET 2 G 3 LEU A 319 ALA A 324 1 O LEU A 323 N LEU A 301 SHEET 3 G 3 LEU A 345 TYR A 347 1 O ILE A 346 N ALA A 324 SHEET 1 H 7 SER B 24 VAL B 29 0 SHEET 2 H 7 HIS B 49 LEU B 56 1 O LYS B 55 N VAL B 29 SHEET 3 H 7 VAL B 73 ILE B 81 1 O GLU B 80 N GLY B 54 SHEET 4 H 7 LYS B 125 LEU B 128 1 O ILE B 127 N ILE B 76 SHEET 5 H 7 ILE B 148 ILE B 151 1 O GLN B 150 N VAL B 126 SHEET 6 H 7 ALA B 170 ILE B 173 1 O PHE B 172 N ILE B 151 SHEET 7 H 7 PHE B 192 GLU B 194 1 O ILE B 193 N ILE B 171 SHEET 1 I 2 TYR B 84 GLY B 86 0 SHEET 2 I 2 TYR B 97 TYR B 99 -1 O TYR B 99 N TYR B 84 SHEET 1 J 3 PHE B 103 VAL B 104 0 SHEET 2 J 3 ASN B 134 ILE B 135 1 O ASN B 134 N VAL B 104 SHEET 3 J 3 ASN B 158 LEU B 159 1 O ASN B 158 N ILE B 135 SHEET 1 K 2 SER B 110 VAL B 113 0 SHEET 2 K 2 VAL B 116 GLY B 119 -1 O VAL B 116 N VAL B 113 SHEET 1 L 4 GLU B 199 VAL B 204 0 SHEET 2 L 4 PHE B 226 GLY B 231 1 O THR B 228 N ILE B 202 SHEET 3 L 4 SER B 250 ASP B 252 1 O ASP B 252 N LEU B 227 SHEET 4 L 4 LYS B 274 LYS B 276 1 O LYS B 276 N LEU B 251 SHEET 1 M 4 THR B 260 ILE B 261 0 SHEET 2 M 4 THR B 283 ILE B 284 1 O THR B 283 N ILE B 261 SHEET 3 M 4 ALA B 307 ILE B 308 1 O ALA B 307 N ILE B 284 SHEET 4 M 4 THR B 331 LEU B 332 1 O THR B 331 N ILE B 308 SHEET 1 N 3 GLY B 297 LEU B 301 0 SHEET 2 N 3 LEU B 319 ALA B 324 1 O LEU B 323 N LEU B 301 SHEET 3 N 3 LEU B 345 TYR B 347 1 O ILE B 346 N ALA B 324 LINK C SER A 37 N MSE A 38 1555 1555 1.34 LINK C MSE A 38 N AMSE A 39 1555 1555 1.34 LINK C MSE A 38 N BMSE A 39 1555 1555 1.33 LINK C AMSE A 39 N THR A 40 1555 1555 1.33 LINK C BMSE A 39 N THR A 40 1555 1555 1.33 LINK C LYS A 82 N MSE A 83 1555 1555 1.32 LINK C MSE A 83 N TYR A 84 1555 1555 1.32 LINK C TYR A 99 N MSE A 100 1555 1555 1.34 LINK C MSE A 100 N ALA A 101 1555 1555 1.33 LINK C ALA A 206 N MSE A 207 1555 1555 1.34 LINK C MSE A 207 N GLY A 208 1555 1555 1.33 LINK C ILE A 214 N AMSE A 215 1555 1555 1.35 LINK C ILE A 214 N BMSE A 215 1555 1555 1.35 LINK C AMSE A 215 N LYS A 216 1555 1555 1.35 LINK C BMSE A 215 N LYS A 216 1555 1555 1.35 LINK C TYR A 244 N MSE A 245 1555 1555 1.35 LINK C MSE A 245 N PRO A 246 1555 1555 1.36 LINK C PHE A 313 N MSE A 314 1555 1555 1.34 LINK C MSE A 314 N GLY A 315 1555 1555 1.32 LINK C SER B 37 N MSE B 38 1555 1555 1.34 LINK C MSE B 38 N AMSE B 39 1555 1555 1.32 LINK C MSE B 38 N BMSE B 39 1555 1555 1.32 LINK C AMSE B 39 N THR B 40 1555 1555 1.34 LINK C BMSE B 39 N THR B 40 1555 1555 1.34 LINK C LYS B 82 N MSE B 83 1555 1555 1.33 LINK C MSE B 83 N TYR B 84 1555 1555 1.32 LINK C TYR B 99 N MSE B 100 1555 1555 1.34 LINK C MSE B 100 N ALA B 101 1555 1555 1.33 LINK C ALA B 206 N MSE B 207 1555 1555 1.34 LINK C MSE B 207 N GLY B 208 1555 1555 1.33 LINK C ILE B 214 N MSE B 215 1555 1555 1.35 LINK C MSE B 215 N LYS B 216 1555 1555 1.36 LINK C TYR B 244 N AMSE B 245 1555 1555 1.32 LINK C TYR B 244 N BMSE B 245 1555 1555 1.32 LINK C AMSE B 245 N PRO B 246 1555 1555 1.36 LINK C BMSE B 245 N PRO B 246 1555 1555 1.34 LINK C PHE B 313 N AMSE B 314 1555 1555 1.35 LINK C PHE B 313 N BMSE B 314 1555 1555 1.35 LINK C AMSE B 314 N GLY B 315 1555 1555 1.34 LINK C BMSE B 314 N GLY B 315 1555 1555 1.34 SITE 1 AC1 3 SER A 30 LYS A 55 HOH A 586 SITE 1 AC2 3 TYR A 91 TYR A 107 ASN B 185 SITE 1 AC3 6 LYS A 274 ILE A 275 LEU A 295 ALA A 296 SITE 2 AC3 6 THR A 298 LEU A 299 SITE 1 AC4 4 GLY A 115 THR A 117 LYS A 141 HIS B 189 SITE 1 AC5 2 GLU A 211 TYR A 244 SITE 1 AC6 3 GLU A 124 LYS A 147 GLU A 199 SITE 1 AC7 5 LYS A 125 ILE A 148 PRO A 197 LEU A 198 SITE 2 AC7 5 GLU A 199 SITE 1 AC8 4 ARG A 320 TYR A 321 HOH A 635 HOH A 767 SITE 1 AC9 4 ASP A 234 ASN A 235 ALA A 236 HOH A 686 SITE 1 BC1 4 GLU B 211 PRO B 221 TYR B 244 HOH B 756 SITE 1 BC2 4 LYS B 147 LEU B 227 SER B 250 ASP B 252 SITE 1 BC3 2 MSE B 100 PHE B 103 SITE 1 BC4 4 LYS B 270 TYR B 271 ARG B 294 HOH B 592 SITE 1 BC5 11 GLU A 41 GLU A 59 ARG A 62 HIS A 63 SITE 2 BC5 11 HOH A 666 LYS B 255 THR B 256 ASN B 257 SITE 3 BC5 11 THR B 259 HIS B 279 ASN B 280 CRYST1 52.210 62.130 66.860 109.80 93.75 91.05 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019153 0.000351 0.001463 0.00000 SCALE2 0.000000 0.016098 0.005834 0.00000 SCALE3 0.000000 0.000000 0.015943 0.00000