HEADER SPLICING 06-JUN-11 3SBT TITLE CRYSTAL STRUCTURE OF A AAR2-PRP8 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YEAST PRP8P RNASEH LIKE DOMAIN, RESIDUES 1836-2092; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: DBF3, DNA39, PRP8, RNA8, SLT21, USA2, YHR165C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA 2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM-11; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: AAR2, YBL06.06, YBL0611, YBL074C; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA 2; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PETM-13 KEYWDS RNASEH LIKE DOMAIN, VHS LIKE DOMAIN, U5 SNRNP ASSEMBLY, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR G.WEBER,K.F.SANTOS,N.HOLTON,M.C.WAHL REVDAT 4 28-FEB-24 3SBT 1 REMARK SEQADV REVDAT 3 20-FEB-13 3SBT 1 REMARK REVDAT 2 31-AUG-11 3SBT 1 JRNL REVDAT 1 27-JUL-11 3SBT 0 JRNL AUTH G.WEBER,V.F.CRISTAO,F.DE L ALVES,K.F.SANTOS,N.HOLTON, JRNL AUTH 2 J.RAPPSILBER,J.D.BEGGS,M.C.WAHL JRNL TITL MECHANISM FOR AAR2P FUNCTION AS A U5 SNRNP ASSEMBLY FACTOR. JRNL REF GENES DEV. V. 25 1601 2011 JRNL REFN ISSN 0890-9369 JRNL PMID 21764848 JRNL DOI 10.1101/GAD.635911 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_353) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 59439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.7382 - 4.9543 0.99 2723 164 0.1680 0.1804 REMARK 3 2 4.9543 - 3.9364 1.00 2715 148 0.1262 0.1456 REMARK 3 3 3.9364 - 3.4400 1.00 2700 149 0.1304 0.1628 REMARK 3 4 3.4400 - 3.1260 1.00 2693 159 0.1532 0.1846 REMARK 3 5 3.1260 - 2.9022 1.00 2675 160 0.1744 0.2120 REMARK 3 6 2.9022 - 2.7313 1.00 2701 136 0.1721 0.2208 REMARK 3 7 2.7313 - 2.5946 1.00 2688 145 0.1731 0.2288 REMARK 3 8 2.5946 - 2.4817 1.00 2688 144 0.1625 0.2039 REMARK 3 9 2.4817 - 2.3863 1.00 2714 138 0.1663 0.2324 REMARK 3 10 2.3863 - 2.3040 1.00 2699 138 0.1596 0.1827 REMARK 3 11 2.3040 - 2.2320 1.00 2680 130 0.1598 0.2069 REMARK 3 12 2.2320 - 2.1682 1.00 2697 128 0.1552 0.2060 REMARK 3 13 2.1682 - 2.1111 1.00 2696 139 0.1643 0.2201 REMARK 3 14 2.1111 - 2.0597 1.00 2693 152 0.1734 0.2502 REMARK 3 15 2.0597 - 2.0128 1.00 2651 134 0.1751 0.2065 REMARK 3 16 2.0128 - 1.9700 1.00 2730 136 0.1784 0.2445 REMARK 3 17 1.9700 - 1.9306 1.00 2674 133 0.1857 0.2263 REMARK 3 18 1.9306 - 1.8942 0.99 2639 153 0.2027 0.2818 REMARK 3 19 1.8942 - 1.8604 0.99 2678 146 0.2025 0.2472 REMARK 3 20 1.8604 - 1.8289 1.00 2705 128 0.2127 0.2351 REMARK 3 21 1.8289 - 1.7994 0.97 2601 139 0.2218 0.2609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 46.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.18440 REMARK 3 B22 (A**2) : -6.75930 REMARK 3 B33 (A**2) : -2.42510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.77240 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4845 REMARK 3 ANGLE : 1.197 6585 REMARK 3 CHIRALITY : 0.090 721 REMARK 3 PLANARITY : 0.005 846 REMARK 3 DIHEDRAL : 13.587 1814 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1834:1991 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7549 7.1725 -18.4770 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.1507 REMARK 3 T33: 0.1426 T12: -0.0074 REMARK 3 T13: 0.0245 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.3346 L22: 1.6165 REMARK 3 L33: 1.4069 L12: -0.0799 REMARK 3 L13: -0.1222 L23: 0.3461 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: 0.0443 S13: -0.0426 REMARK 3 S21: -0.1256 S22: -0.0359 S23: -0.0575 REMARK 3 S31: 0.0122 S32: -0.0542 S33: 0.0168 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1992:2086 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0255 22.8698 -10.4268 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.1706 REMARK 3 T33: 0.2978 T12: -0.0528 REMARK 3 T13: 0.0320 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.8143 L22: 2.3103 REMARK 3 L33: 1.4048 L12: -0.4978 REMARK 3 L13: -0.3288 L23: 0.2667 REMARK 3 S TENSOR REMARK 3 S11: 0.2206 S12: -0.1129 S13: 0.3205 REMARK 3 S21: -0.1134 S22: -0.0824 S23: -0.6319 REMARK 3 S31: -0.2759 S32: 0.3491 S33: -0.1018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESSEQ 1:153 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9441 7.9389 -17.3613 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1796 REMARK 3 T33: 0.1891 T12: 0.0108 REMARK 3 T13: -0.0152 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.8318 L22: 2.6289 REMARK 3 L33: 2.3572 L12: 0.4501 REMARK 3 L13: 0.3020 L23: 0.6224 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: -0.0677 S13: 0.0306 REMARK 3 S21: 0.1877 S22: -0.0468 S23: -0.1543 REMARK 3 S31: 0.0538 S32: 0.2026 S33: 0.0146 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESSEQ 171:317 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2089 -0.8556 -38.1081 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.1322 REMARK 3 T33: 0.1160 T12: 0.0172 REMARK 3 T13: -0.0118 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.7320 L22: 1.3983 REMARK 3 L33: 3.3663 L12: -0.1357 REMARK 3 L13: 0.6722 L23: -0.7135 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.1058 S13: 0.0632 REMARK 3 S21: -0.1551 S22: 0.0117 S23: 0.1604 REMARK 3 S31: 0.2610 S32: -0.0238 S33: -0.0134 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9814 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 89.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 26.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5, 0.1 M LITHIUM REMARK 280 SULFATE, 20 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.66700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.66700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 29.98480 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -89.14949 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1833 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 PRO A 2091 REMARK 465 SER A 2092 REMARK 465 LYS B 154 REMARK 465 SER B 155 REMARK 465 SER B 156 REMARK 465 LEU B 157 REMARK 465 GLN B 158 REMARK 465 LYS B 159 REMARK 465 ALA B 160 REMARK 465 GLY B 161 REMARK 465 SER B 162 REMARK 465 LYS B 163 REMARK 465 MET B 164 REMARK 465 GLU B 165 REMARK 465 ALA B 166 REMARK 465 LYS B 167 REMARK 465 ASN B 168 REMARK 465 GLU B 169 REMARK 465 ASP B 170 REMARK 465 GLY B 318 REMARK 465 LYS B 319 REMARK 465 ASP B 320 REMARK 465 ASN B 321 REMARK 465 GLU B 322 REMARK 465 ASP B 323 REMARK 465 ASP B 324 REMARK 465 ALA B 325 REMARK 465 LEU B 326 REMARK 465 ILE B 327 REMARK 465 TYR B 328 REMARK 465 GLY B 329 REMARK 465 ILE B 330 REMARK 465 SER B 331 REMARK 465 ASP B 332 REMARK 465 GLU B 333 REMARK 465 GLU B 334 REMARK 465 ARG B 335 REMARK 465 ASP B 336 REMARK 465 ASP B 337 REMARK 465 GLU B 338 REMARK 465 ASP B 339 REMARK 465 ASP B 340 REMARK 465 GLU B 341 REMARK 465 HIS B 342 REMARK 465 ASN B 343 REMARK 465 PRO B 344 REMARK 465 THR B 345 REMARK 465 ILE B 346 REMARK 465 VAL B 347 REMARK 465 GLY B 348 REMARK 465 GLY B 349 REMARK 465 LEU B 350 REMARK 465 TYR B 351 REMARK 465 TYR B 352 REMARK 465 GLN B 353 REMARK 465 ARG B 354 REMARK 465 PRO B 355 REMARK 465 LEU B 356 REMARK 465 GLU B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 1927 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1951 67.79 -119.82 REMARK 500 PRO A1964 30.40 -93.18 REMARK 500 ASP A1993 -124.04 44.55 REMARK 500 ASP B 18 -132.69 51.81 REMARK 500 PRO B 29 69.89 -69.67 REMARK 500 ASN B 51 93.86 -160.13 REMARK 500 LYS B 107 -107.14 -79.57 REMARK 500 ILE B 108 91.61 62.15 REMARK 500 LYS B 132 80.47 -151.82 REMARK 500 GLU B 151 -102.68 77.37 REMARK 500 LYS B 184 64.46 -112.82 REMARK 500 LYS B 215 -34.90 74.82 REMARK 500 LEU B 302 56.63 -117.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 2093 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E9O RELATED DB: PDB REMARK 900 RELATED ID: 3SBS RELATED DB: PDB REMARK 900 RELATED ID: 3SBG RELATED DB: PDB DBREF 3SBT A 1836 2092 UNP P33334 PRP8_YEAST 1836 2092 DBREF 3SBT B 1 355 UNP P32357 AAR2_YEAST 1 355 SEQADV 3SBT GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 3SBT ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 3SBT MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 3SBT LEU B 356 UNP P32357 EXPRESSION TAG SEQADV 3SBT GLU B 357 UNP P32357 EXPRESSION TAG SEQADV 3SBT HIS B 358 UNP P32357 EXPRESSION TAG SEQADV 3SBT HIS B 359 UNP P32357 EXPRESSION TAG SEQADV 3SBT HIS B 360 UNP P32357 EXPRESSION TAG SEQADV 3SBT HIS B 361 UNP P32357 EXPRESSION TAG SEQADV 3SBT HIS B 362 UNP P32357 EXPRESSION TAG SEQADV 3SBT HIS B 363 UNP P32357 EXPRESSION TAG SEQRES 1 A 260 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 260 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 260 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 260 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 260 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 260 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 260 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 260 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 260 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 260 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 260 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 260 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 260 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 260 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 260 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 260 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 260 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 260 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 260 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 260 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA PRO SER SEQRES 1 B 363 MET ASN THR VAL PRO PHE THR SER ALA PRO ILE GLU VAL SEQRES 2 B 363 THR ILE GLY ILE ASP GLN TYR SER PHE ASN VAL LYS GLU SEQRES 3 B 363 ASN GLN PRO PHE HIS GLY ILE LYS ASP ILE PRO ILE GLY SEQRES 4 B 363 HIS VAL HIS VAL ILE HIS PHE GLN HIS ALA ASP ASN SER SEQRES 5 B 363 SER MET ARG TYR GLY TYR TRP PHE ASP CYS ARG MET GLY SEQRES 6 B 363 ASN PHE TYR ILE GLN TYR ASP PRO LYS ASP GLY LEU TYR SEQRES 7 B 363 LYS MET MET GLU GLU ARG ASP GLY ALA LYS PHE GLU ASN SEQRES 8 B 363 ILE VAL HIS ASN PHE LYS GLU ARG GLN MET MET VAL SER SEQRES 9 B 363 TYR PRO LYS ILE ASP GLU ASP ASP THR TRP TYR ASN LEU SEQRES 10 B 363 THR GLU PHE VAL GLN MET ASP LYS ILE ARG LYS ILE VAL SEQRES 11 B 363 ARG LYS ASP GLU ASN GLN PHE SER TYR VAL ASP SER SER SEQRES 12 B 363 MET THR THR VAL GLN GLU ASN GLU LEU LEU LYS SER SER SEQRES 13 B 363 LEU GLN LYS ALA GLY SER LYS MET GLU ALA LYS ASN GLU SEQRES 14 B 363 ASP ASP PRO ALA HIS SER LEU ASN TYR THR VAL ILE ASN SEQRES 15 B 363 PHE LYS SER ARG GLU ALA ILE ARG PRO GLY HIS GLU MET SEQRES 16 B 363 GLU ASP PHE LEU ASP LYS SER TYR TYR LEU ASN THR VAL SEQRES 17 B 363 MET LEU GLN GLY ILE PHE LYS ASN SER SER ASN TYR PHE SEQRES 18 B 363 GLY GLU LEU GLN PHE ALA PHE LEU ASN ALA MET PHE PHE SEQRES 19 B 363 GLY ASN TYR GLY SER SER LEU GLN TRP HIS ALA MET ILE SEQRES 20 B 363 GLU LEU ILE CYS SER SER ALA THR VAL PRO LYS HIS MET SEQRES 21 B 363 LEU ASP LYS LEU ASP GLU ILE LEU TYR TYR GLN ILE LYS SEQRES 22 B 363 THR LEU PRO GLU GLN TYR SER ASP ILE LEU LEU ASN GLU SEQRES 23 B 363 ARG VAL TRP ASN ILE CYS LEU TYR SER SER PHE GLN LYS SEQRES 24 B 363 ASN SER LEU HIS ASN THR GLU LYS ILE MET GLU ASN LYS SEQRES 25 B 363 TYR PRO GLU LEU LEU GLY LYS ASP ASN GLU ASP ASP ALA SEQRES 26 B 363 LEU ILE TYR GLY ILE SER ASP GLU GLU ARG ASP ASP GLU SEQRES 27 B 363 ASP ASP GLU HIS ASN PRO THR ILE VAL GLY GLY LEU TYR SEQRES 28 B 363 TYR GLN ARG PRO LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 1 5 HET SO4 A 2 5 HET PGO A2093 5 HETNAM SO4 SULFATE ION HETNAM PGO S-1,2-PROPANEDIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 PGO C3 H8 O2 FORMUL 6 HOH *585(H2 O) HELIX 1 1 ASN A 1839 ASN A 1845 5 7 HELIX 2 2 HIS A 1895 ALA A 1900 5 6 HELIX 3 3 ARG A 1904 LEU A 1924 1 21 HELIX 4 4 PRO A 1925 GLN A 1929 5 5 HELIX 5 5 ARG A 1937 ALA A 1939 5 3 HELIX 6 6 MET A 1940 MET A 1948 1 9 HELIX 7 7 PRO A 1964 SER A 1970 5 7 HELIX 8 8 ILE A 1971 ALA A 1981 1 11 HELIX 9 9 ASP A 1994 ARG A 1998 5 5 HELIX 10 10 SER A 2000 ASN A 2018 1 19 HELIX 11 11 ASN A 2018 LEU A 2027 1 10 HELIX 12 12 THR A 2044 ASN A 2068 1 25 HELIX 13 13 THR A 2075 GLY A 2085 1 11 HELIX 14 14 ASP B 61 GLY B 65 5 5 HELIX 15 15 ASP B 85 ARG B 99 1 15 HELIX 16 16 ASP B 112 GLU B 119 1 8 HELIX 17 17 GLN B 122 VAL B 130 1 9 HELIX 18 18 ASP B 171 ALA B 173 5 3 HELIX 19 19 HIS B 193 ASP B 200 1 8 HELIX 20 20 LYS B 201 THR B 207 1 7 HELIX 21 21 ASN B 216 GLY B 235 1 20 HELIX 22 22 ASN B 236 SER B 252 1 17 HELIX 23 23 PRO B 257 LEU B 275 1 19 HELIX 24 24 PRO B 276 GLN B 278 5 3 HELIX 25 25 TYR B 279 LEU B 284 1 6 HELIX 26 26 ASN B 285 SER B 295 1 11 HELIX 27 27 LEU B 302 TYR B 313 1 12 HELIX 28 28 PRO B 314 LEU B 317 5 4 SHEET 1 A 6 ALA A1955 ARG A1957 0 SHEET 2 A 6 GLN A1932 VAL A1935 1 N ILE A1933 O ALA A1955 SHEET 3 A 6 LYS A1849 ASP A1853 1 N LEU A1850 O ILE A1934 SHEET 4 A 6 GLY A1877 LEU A1882 -1 O LEU A1882 N PHE A1851 SHEET 5 A 6 HIS A1888 ILE A1894 -1 O PHE A1890 N THR A1881 SHEET 6 A 6 GLN A1985 ASN A1990 -1 O PHE A1989 N LEU A1889 SHEET 1 B 2 ARG A1859 LYS A1864 0 SHEET 2 B 2 VAL A1870 ILE A1875 -1 O ALA A1871 N HIS A1863 SHEET 1 C 3 ASN B 2 PRO B 5 0 SHEET 2 C 3 GLY B 32 ILE B 36 -1 O ILE B 36 N ASN B 2 SHEET 3 C 3 VAL B 103 SER B 104 1 O VAL B 103 N LYS B 34 SHEET 1 D 5 TYR B 20 VAL B 24 0 SHEET 2 D 5 VAL B 13 ILE B 17 -1 N VAL B 13 O VAL B 24 SHEET 3 D 5 HIS B 42 HIS B 48 -1 O HIS B 45 N GLY B 16 SHEET 4 D 5 ASN B 51 PHE B 60 -1 O TYR B 56 N PHE B 46 SHEET 5 D 5 SER B 138 ASP B 141 -1 O SER B 138 N TRP B 59 SHEET 1 E 2 ASN B 66 ASP B 72 0 SHEET 2 E 2 LEU B 77 GLU B 83 -1 O GLU B 83 N ASN B 66 SHEET 1 F 2 THR B 145 THR B 146 0 SHEET 2 F 2 SER B 175 LEU B 176 1 O LEU B 176 N THR B 145 SITE 1 AC1 4 ALA A1871 THR A1872 LYS B 74 LYS B 307 SITE 1 AC2 9 HOH A 7 HOH A 56 HOH A 369 HOH A 571 SITE 2 AC2 9 LYS A1885 SER A2000 SER A2001 LYS B 107 SITE 3 AC2 9 ASP B 109 SITE 1 AC3 6 HOH A 23 SER A1970 ILE A1971 ASP A1972 SITE 2 AC3 6 ILE A2034 LEU A2039 CRYST1 89.334 82.019 94.057 90.00 108.59 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011194 0.000000 0.003765 0.00000 SCALE2 0.000000 0.012192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011217 0.00000