HEADER HYDROLASE REGULATOR, DNA BINDING PROTEIN06-JUN-11 3SC3 TITLE CRYSTAL STRUCTURE OF A PUTATIVE DNA REPLICATION REGULATOR HDA TITLE 2 (SAMA_1916) FROM SHEWANELLA AMAZONENSIS SB2B AT 3.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DNA REPLICATION REGULATOR HDA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY INACTIVATION OF DNAA HDA PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA AMAZONENSIS; SOURCE 3 ORGANISM_TAXID: 326297; SOURCE 4 STRAIN: SB2B; SOURCE 5 GENE: SAMA_14OCT04_CONTIG53_REVISED_GENE1514, SAMA_1916; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE, HYDROLASE REGULATOR, KEYWDS 4 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 30-OCT-24 3SC3 1 REMARK REVDAT 4 01-FEB-23 3SC3 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 3SC3 1 JRNL REVDAT 2 25-OCT-17 3SC3 1 REMARK REVDAT 1 13-JUL-11 3SC3 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE DNA REPLICATION REGULATOR JRNL TITL 2 HDA (SAMA_1916) FROM SHEWANELLA AMAZONENSIS SB2B AT 3.00 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2906 - 6.4560 1.00 1353 154 0.1799 0.1943 REMARK 3 2 6.4560 - 5.1283 1.00 1316 144 0.2096 0.2160 REMARK 3 3 5.1283 - 4.4811 1.00 1306 148 0.1843 0.2322 REMARK 3 4 4.4811 - 4.0719 1.00 1281 145 0.2084 0.2141 REMARK 3 5 4.0719 - 3.7804 1.00 1291 144 0.2251 0.2958 REMARK 3 6 3.7804 - 3.5576 1.00 1298 141 0.2403 0.2739 REMARK 3 7 3.5576 - 3.3796 1.00 1281 144 0.2832 0.3324 REMARK 3 8 3.3796 - 3.2325 1.00 1272 146 0.2986 0.3532 REMARK 3 9 3.2325 - 3.1082 1.00 1290 141 0.3226 0.3507 REMARK 3 10 3.1082 - 3.0010 1.00 1269 142 0.3310 0.3840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 83.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 121.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -29.65120 REMARK 3 B22 (A**2) : -29.65120 REMARK 3 B33 (A**2) : -29.65120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3393 REMARK 3 ANGLE : 0.550 4591 REMARK 3 CHIRALITY : 0.035 511 REMARK 3 PLANARITY : 0.002 593 REMARK 3 DIHEDRAL : 14.668 1255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 30:35 REMARK 3 ORIGIN FOR THE GROUP (A): 40.3695 11.9674 117.9710 REMARK 3 T TENSOR REMARK 3 T11: 2.0440 T22: 2.0654 REMARK 3 T33: 2.4473 T12: -0.0410 REMARK 3 T13: 0.5256 T23: -0.4757 REMARK 3 L TENSOR REMARK 3 L11: -0.1030 L22: -0.0095 REMARK 3 L33: 0.0233 L12: 0.0296 REMARK 3 L13: 0.0472 L23: 0.0889 REMARK 3 S TENSOR REMARK 3 S11: 1.5144 S12: 1.5546 S13: -1.2483 REMARK 3 S21: -0.8519 S22: -0.0810 S23: 1.5361 REMARK 3 S31: 0.1964 S32: -0.6946 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 36:168 REMARK 3 ORIGIN FOR THE GROUP (A): 60.5264 10.6813 116.9135 REMARK 3 T TENSOR REMARK 3 T11: 1.1118 T22: 1.2424 REMARK 3 T33: 1.2356 T12: 0.0469 REMARK 3 T13: -0.0920 T23: -0.1298 REMARK 3 L TENSOR REMARK 3 L11: 4.9755 L22: 6.7755 REMARK 3 L33: 5.9025 L12: -2.4450 REMARK 3 L13: -0.7820 L23: -0.6714 REMARK 3 S TENSOR REMARK 3 S11: 0.1335 S12: -0.5295 S13: 0.4594 REMARK 3 S21: 0.6432 S22: -0.0440 S23: -0.0292 REMARK 3 S31: -0.4127 S32: 0.0451 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 169:175 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8913 3.2278 120.2593 REMARK 3 T TENSOR REMARK 3 T11: 1.6533 T22: 2.3319 REMARK 3 T33: 1.7208 T12: 0.1643 REMARK 3 T13: -0.2828 T23: 0.2733 REMARK 3 L TENSOR REMARK 3 L11: -0.0270 L22: -0.1401 REMARK 3 L33: 0.0139 L12: 0.0921 REMARK 3 L13: 0.0773 L23: -0.0090 REMARK 3 S TENSOR REMARK 3 S11: -0.2857 S12: 0.0089 S13: -1.1875 REMARK 3 S21: 0.2794 S22: 1.6830 S23: 0.6906 REMARK 3 S31: 1.0831 S32: -2.5249 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 176:241 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4539 0.2123 107.6912 REMARK 3 T TENSOR REMARK 3 T11: 1.4733 T22: 1.3581 REMARK 3 T33: 1.4010 T12: 0.0352 REMARK 3 T13: 0.1231 T23: 0.2221 REMARK 3 L TENSOR REMARK 3 L11: 2.7534 L22: 4.7506 REMARK 3 L33: 4.4168 L12: -1.9910 REMARK 3 L13: -0.7890 L23: 0.9134 REMARK 3 S TENSOR REMARK 3 S11: 0.3077 S12: -0.5373 S13: -0.5023 REMARK 3 S21: 0.4879 S22: 0.0453 S23: -0.1312 REMARK 3 S31: 0.2491 S32: 0.0864 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESSEQ 31:38 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3426 28.9727 100.7788 REMARK 3 T TENSOR REMARK 3 T11: 1.7112 T22: 1.3271 REMARK 3 T33: 1.9525 T12: 0.1255 REMARK 3 T13: 0.0124 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.1295 L22: 0.0079 REMARK 3 L33: 0.1402 L12: 0.1149 REMARK 3 L13: -0.0697 L23: -0.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.1811 S12: -1.0869 S13: 0.4450 REMARK 3 S21: -0.1228 S22: -0.0698 S23: -2.0228 REMARK 3 S31: -0.7776 S32: 0.2292 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESSEQ 39:168 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1056 21.1585 97.1512 REMARK 3 T TENSOR REMARK 3 T11: 1.1468 T22: 1.0291 REMARK 3 T33: 1.2708 T12: 0.1063 REMARK 3 T13: 0.0739 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 4.2377 L22: 5.0511 REMARK 3 L33: 5.7466 L12: -0.1440 REMARK 3 L13: 2.7663 L23: -0.6066 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.4185 S13: 0.4881 REMARK 3 S21: 0.5908 S22: 0.1286 S23: 0.3744 REMARK 3 S31: -0.4097 S32: -0.3926 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESSEQ 169:175 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7281 24.7419 91.0132 REMARK 3 T TENSOR REMARK 3 T11: 1.5727 T22: 1.3832 REMARK 3 T33: 1.9200 T12: -0.0207 REMARK 3 T13: -0.0809 T23: 0.2286 REMARK 3 L TENSOR REMARK 3 L11: 0.0487 L22: -0.0964 REMARK 3 L33: -0.0594 L12: -0.1098 REMARK 3 L13: 0.1071 L23: -0.1666 REMARK 3 S TENSOR REMARK 3 S11: 0.4861 S12: 1.1096 S13: -1.3206 REMARK 3 S21: -1.3070 S22: -0.4221 S23: -0.1880 REMARK 3 S31: -0.1396 S32: 0.8859 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESSEQ 176:241 REMARK 3 ORIGIN FOR THE GROUP (A): 57.3607 12.8738 93.1299 REMARK 3 T TENSOR REMARK 3 T11: 1.1462 T22: 1.3187 REMARK 3 T33: 1.2355 T12: -0.0151 REMARK 3 T13: 0.1009 T23: 0.1014 REMARK 3 L TENSOR REMARK 3 L11: 2.6085 L22: 5.1331 REMARK 3 L33: 4.0871 L12: -0.0952 REMARK 3 L13: 1.3343 L23: 0.1765 REMARK 3 S TENSOR REMARK 3 S11: 0.2495 S12: 0.6502 S13: 0.3763 REMARK 3 S21: -0.1276 S22: -0.1686 S23: 0.1020 REMARK 3 S31: -0.0760 S32: -0.0650 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. SULFATE (SO4) MODELED ARE PRESENT IN REMARK 3 CRYSTLLIZATION/CRYO CONDITION. REMARK 4 REMARK 4 3SC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97799 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2007 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14422 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.881 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.01400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M (NH4)2SO4, 0.1M HEPES PH 7.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.22000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 81.22000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 81.22000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 81.22000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 81.22000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 81.22000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 81.22000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.22000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 81.22000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 81.22000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 81.22000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 81.22000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 81.22000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 81.22000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 81.22000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 81.22000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 81.22000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 81.22000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 81.22000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 81.22000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 81.22000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 81.22000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 81.22000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 81.22000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 81.22000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 81.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 VAL A 18 REMARK 465 HIS A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 ASP A 22 REMARK 465 ASP A 23 REMARK 465 GLU A 24 REMARK 465 THR A 25 REMARK 465 PHE A 26 REMARK 465 THR A 27 REMARK 465 SER A 28 REMARK 465 TYR A 29 REMARK 465 GLY B 0 REMARK 465 VAL B 18 REMARK 465 HIS B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 ASP B 22 REMARK 465 ASP B 23 REMARK 465 GLU B 24 REMARK 465 THR B 25 REMARK 465 PHE B 26 REMARK 465 THR B 27 REMARK 465 SER B 28 REMARK 465 TYR B 29 REMARK 465 TYR B 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 87 0.22 -67.98 REMARK 500 ASP A 175 20.30 -75.95 REMARK 500 ARG B 204 -39.51 -132.94 REMARK 500 ARG B 207 -18.75 86.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396931 RELATED DB: TARGETDB REMARK 900 RELATED ID: 3BOS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PUTATIVE DNA REPLICATION REGULATOR HDA (SAMA_ REMARK 900 1916) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.75 A RESOLUTION - CDP REMARK 900 AND MG2+ BOUND REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 18-241) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3SC3 A 18 241 UNP A1S6W5 A1S6W5_SHEAM 18 241 DBREF 3SC3 B 18 241 UNP A1S6W5 A1S6W5_SHEAM 18 241 SEQADV 3SC3 GLY A 0 UNP A1S6W5 EXPRESSION TAG SEQADV 3SC3 GLY B 0 UNP A1S6W5 EXPRESSION TAG SEQRES 1 A 225 GLY VAL HIS LEU PRO ASP ASP GLU THR PHE THR SER TYR SEQRES 2 A 225 TYR PRO ALA ALA GLY ASN ASP GLU LEU ILE GLY ALA LEU SEQRES 3 A 225 LYS SER ALA ALA SER GLY ASP GLY VAL GLN ALA ILE TYR SEQRES 4 A 225 LEU TRP GLY PRO VAL LYS SER GLY ARG THR HIS LEU ILE SEQRES 5 A 225 HIS ALA ALA CYS ALA ARG ALA ASN GLU LEU GLU ARG ARG SEQRES 6 A 225 SER PHE TYR ILE PRO LEU GLY ILE HIS ALA SER ILE SER SEQRES 7 A 225 THR ALA LEU LEU GLU GLY LEU GLU GLN PHE ASP LEU ILE SEQRES 8 A 225 CYS ILE ASP ASP VAL ASP ALA VAL ALA GLY HIS PRO LEU SEQRES 9 A 225 TRP GLU GLU ALA ILE PHE ASP LEU TYR ASN ARG VAL ALA SEQRES 10 A 225 GLU GLN LYS ARG GLY SER LEU ILE VAL SER ALA SER ALA SEQRES 11 A 225 SER PRO MSE GLU ALA GLY PHE VAL LEU PRO ASP LEU VAL SEQRES 12 A 225 SER ARG MSE HIS TRP GLY LEU THR TYR GLN LEU GLN PRO SEQRES 13 A 225 MSE MSE ASP ASP GLU LYS LEU ALA ALA LEU GLN ARG ARG SEQRES 14 A 225 ALA ALA MSE ARG GLY LEU GLN LEU PRO GLU ASP VAL GLY SEQRES 15 A 225 ARG PHE LEU LEU ASN ARG MSE ALA ARG ASP LEU ARG THR SEQRES 16 A 225 LEU PHE ASP VAL LEU ASP ARG LEU ASP LYS ALA SER MSE SEQRES 17 A 225 VAL HIS GLN ARG LYS LEU THR ILE PRO PHE VAL LYS GLU SEQRES 18 A 225 MSE LEU ARG LEU SEQRES 1 B 225 GLY VAL HIS LEU PRO ASP ASP GLU THR PHE THR SER TYR SEQRES 2 B 225 TYR PRO ALA ALA GLY ASN ASP GLU LEU ILE GLY ALA LEU SEQRES 3 B 225 LYS SER ALA ALA SER GLY ASP GLY VAL GLN ALA ILE TYR SEQRES 4 B 225 LEU TRP GLY PRO VAL LYS SER GLY ARG THR HIS LEU ILE SEQRES 5 B 225 HIS ALA ALA CYS ALA ARG ALA ASN GLU LEU GLU ARG ARG SEQRES 6 B 225 SER PHE TYR ILE PRO LEU GLY ILE HIS ALA SER ILE SER SEQRES 7 B 225 THR ALA LEU LEU GLU GLY LEU GLU GLN PHE ASP LEU ILE SEQRES 8 B 225 CYS ILE ASP ASP VAL ASP ALA VAL ALA GLY HIS PRO LEU SEQRES 9 B 225 TRP GLU GLU ALA ILE PHE ASP LEU TYR ASN ARG VAL ALA SEQRES 10 B 225 GLU GLN LYS ARG GLY SER LEU ILE VAL SER ALA SER ALA SEQRES 11 B 225 SER PRO MSE GLU ALA GLY PHE VAL LEU PRO ASP LEU VAL SEQRES 12 B 225 SER ARG MSE HIS TRP GLY LEU THR TYR GLN LEU GLN PRO SEQRES 13 B 225 MSE MSE ASP ASP GLU LYS LEU ALA ALA LEU GLN ARG ARG SEQRES 14 B 225 ALA ALA MSE ARG GLY LEU GLN LEU PRO GLU ASP VAL GLY SEQRES 15 B 225 ARG PHE LEU LEU ASN ARG MSE ALA ARG ASP LEU ARG THR SEQRES 16 B 225 LEU PHE ASP VAL LEU ASP ARG LEU ASP LYS ALA SER MSE SEQRES 17 B 225 VAL HIS GLN ARG LYS LEU THR ILE PRO PHE VAL LYS GLU SEQRES 18 B 225 MSE LEU ARG LEU MODRES 3SC3 MSE A 149 MET SELENOMETHIONINE MODRES 3SC3 MSE A 162 MET SELENOMETHIONINE MODRES 3SC3 MSE A 173 MET SELENOMETHIONINE MODRES 3SC3 MSE A 174 MET SELENOMETHIONINE MODRES 3SC3 MSE A 188 MET SELENOMETHIONINE MODRES 3SC3 MSE A 205 MET SELENOMETHIONINE MODRES 3SC3 MSE A 224 MET SELENOMETHIONINE MODRES 3SC3 MSE A 238 MET SELENOMETHIONINE MODRES 3SC3 MSE B 149 MET SELENOMETHIONINE MODRES 3SC3 MSE B 162 MET SELENOMETHIONINE MODRES 3SC3 MSE B 173 MET SELENOMETHIONINE MODRES 3SC3 MSE B 174 MET SELENOMETHIONINE MODRES 3SC3 MSE B 188 MET SELENOMETHIONINE MODRES 3SC3 MSE B 205 MET SELENOMETHIONINE MODRES 3SC3 MSE B 224 MET SELENOMETHIONINE MODRES 3SC3 MSE B 238 MET SELENOMETHIONINE HET MSE A 149 8 HET MSE A 162 8 HET MSE A 173 8 HET MSE A 174 8 HET MSE A 188 8 HET MSE A 205 8 HET MSE A 224 8 HET MSE A 238 8 HET MSE B 149 8 HET MSE B 162 8 HET MSE B 173 8 HET MSE B 174 8 HET MSE B 188 8 HET MSE B 205 8 HET MSE B 224 8 HET MSE B 238 8 HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 B 3 5 HET SO4 B 4 5 HET SO4 B 5 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 SO4 5(O4 S 2-) HELIX 1 1 ASN A 35 SER A 47 1 13 HELIX 2 2 GLY A 63 LEU A 78 1 16 HELIX 3 3 GLY A 88 HIS A 90 5 3 HELIX 4 4 SER A 94 LEU A 98 5 5 HELIX 5 5 GLY A 100 PHE A 104 5 5 HELIX 6 6 ASP A 111 ALA A 116 5 6 HELIX 7 7 HIS A 118 GLU A 134 1 17 HELIX 8 8 LEU A 155 TRP A 164 1 10 HELIX 9 9 ASP A 176 ARG A 189 1 14 HELIX 10 10 PRO A 194 MSE A 205 1 12 HELIX 11 11 ASP A 208 HIS A 226 1 19 HELIX 12 12 THR A 231 LEU A 239 1 9 HELIX 13 13 ASN B 35 ALA B 46 1 12 HELIX 14 14 GLY B 63 LEU B 78 1 16 HELIX 15 15 GLY B 88 HIS B 90 5 3 HELIX 16 16 SER B 94 GLU B 99 5 6 HELIX 17 17 GLY B 100 PHE B 104 5 5 HELIX 18 18 ASP B 111 ALA B 116 5 6 HELIX 19 19 HIS B 118 GLN B 135 1 18 HELIX 20 20 LEU B 155 TRP B 164 1 10 HELIX 21 21 MSE B 174 ARG B 189 1 16 HELIX 22 22 PRO B 194 ASN B 203 1 10 HELIX 23 23 ASP B 208 GLN B 227 1 20 HELIX 24 24 THR B 231 LEU B 239 1 9 SHEET 1 A 5 SER A 82 PRO A 86 0 SHEET 2 A 5 LEU A 106 ASP A 110 1 O CYS A 108 N PHE A 83 SHEET 3 A 5 SER A 139 ALA A 144 1 O ILE A 141 N ILE A 109 SHEET 4 A 5 ALA A 53 TRP A 57 1 N LEU A 56 O VAL A 142 SHEET 5 A 5 LEU A 166 GLN A 169 1 O LEU A 166 N ALA A 53 SHEET 1 B 5 SER B 82 PRO B 86 0 SHEET 2 B 5 LEU B 106 ASP B 110 1 O CYS B 108 N PHE B 83 SHEET 3 B 5 SER B 139 ALA B 144 1 O SER B 143 N ILE B 109 SHEET 4 B 5 ALA B 53 TRP B 57 1 N LEU B 56 O VAL B 142 SHEET 5 B 5 TYR B 168 GLN B 169 1 O TYR B 168 N TYR B 55 LINK C PRO A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N GLU A 150 1555 1555 1.33 LINK C ARG A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N HIS A 163 1555 1555 1.33 LINK C PRO A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N ASP A 175 1555 1555 1.33 LINK C ALA A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N ARG A 189 1555 1555 1.33 LINK C ARG A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N ALA A 206 1555 1555 1.33 LINK C SER A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N VAL A 225 1555 1555 1.33 LINK C GLU A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N LEU A 239 1555 1555 1.33 LINK C PRO B 148 N MSE B 149 1555 1555 1.33 LINK C MSE B 149 N GLU B 150 1555 1555 1.33 LINK C ARG B 161 N MSE B 162 1555 1555 1.33 LINK C MSE B 162 N HIS B 163 1555 1555 1.33 LINK C PRO B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N MSE B 174 1555 1555 1.33 LINK C MSE B 174 N ASP B 175 1555 1555 1.33 LINK C ALA B 187 N MSE B 188 1555 1555 1.33 LINK C MSE B 188 N ARG B 189 1555 1555 1.33 LINK C ARG B 204 N MSE B 205 1555 1555 1.33 LINK C MSE B 205 N ALA B 206 1555 1555 1.33 LINK C SER B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N VAL B 225 1555 1555 1.33 LINK C GLU B 237 N MSE B 238 1555 1555 1.33 LINK C MSE B 238 N LEU B 239 1555 1555 1.33 CISPEP 1 ASP B 49 GLY B 50 0 0.92 SITE 1 AC1 7 PRO A 59 VAL A 60 LYS A 61 SER A 62 SITE 2 AC1 7 GLY A 63 ARG A 64 THR A 65 SITE 1 AC2 5 SER A 147 PRO A 148 MSE A 149 HIS A 163 SITE 2 AC2 5 LYS B 136 SITE 1 AC3 6 PRO B 59 LYS B 61 SER B 62 GLY B 63 SITE 2 AC3 6 ARG B 64 THR B 65 SITE 1 AC4 4 SER B 147 PRO B 148 MSE B 149 HIS B 163 SITE 1 AC5 4 HIS B 90 ALA B 91 HIS B 118 TRP B 121 CRYST1 162.440 162.440 162.440 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006156 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006156 0.00000