HEADER OXIDOREDUCTASE 06-JUN-11 3SC4 TITLE CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE (A0QTM2 HOMOLOG) TITLE 2 MYCOBACTERIUM THERMORESISTIBILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT CHAIN DEHYDROGENASE (A0QTM2 HOMOLOG); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3SC4 1 REMARK REVDAT 2 25-MAY-16 3SC4 1 JRNL VERSN REVDAT 1 29-JUN-11 3SC4 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),A.GARDBERG,M.C.CLIFTON,B.STAKER,L.STEWART JRNL TITL CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE (A0QTM2 JRNL TITL 2 HOMOLOG) MYCOBACTERIUM THERMORESISTIBILE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2343 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2073 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4113 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 0.67000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.291 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.290 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4246 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2824 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5797 ; 1.460 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6946 ; 0.906 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 6.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;37.398 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 667 ;14.984 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 672 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4793 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 775 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2815 ; 0.606 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1149 ; 0.122 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4520 ; 1.153 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1431 ; 1.837 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1273 ; 3.052 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 400 4 REMARK 3 1 B 1 B 400 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3357 ; 0.240 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3357 ; 0.460 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5120 -35.6330 34.7740 REMARK 3 T TENSOR REMARK 3 T11: 0.0091 T22: 0.0478 REMARK 3 T33: 0.0834 T12: -0.0128 REMARK 3 T13: 0.0102 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.5568 L22: 1.1193 REMARK 3 L33: 1.0119 L12: 0.6633 REMARK 3 L13: -0.2931 L23: -0.2940 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.2498 S13: -0.0953 REMARK 3 S21: 0.0655 S22: -0.1218 S23: 0.0120 REMARK 3 S31: 0.0507 S32: 0.0234 S33: 0.0920 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 281 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2420 -24.3770 4.0820 REMARK 3 T TENSOR REMARK 3 T11: 0.0527 T22: 0.0116 REMARK 3 T33: 0.0758 T12: 0.0023 REMARK 3 T13: 0.0017 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.8389 L22: 1.2132 REMARK 3 L33: 1.2865 L12: 0.3246 REMARK 3 L13: -0.5613 L23: -0.2984 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: 0.0781 S13: 0.0619 REMARK 3 S21: -0.2307 S22: -0.0102 S23: -0.0587 REMARK 3 S31: 0.0751 S32: -0.0638 S33: 0.0781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3SC4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL, REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30423 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3KVO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 220646H3. REMARK 280 FOCUS SCREEN BASED ON JCSG E2. 2 M AMMONIUM SULFATE, 0.1 M REMARK 280 CACODYLATE, PH 6.54, 200 MM SODIUM CHLORIDE. MYTHA.01365.A.A1 REMARK 280 PW28688 AT 27.8 MG/ML, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.25333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.62667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.44000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.81333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ASP A 208 CG OD1 OD2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 ASP B 208 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 15 O PRO B 46 2.03 REMARK 500 O GLY B 12 ND2 ASN B 96 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 LEU A 204 CD1 LEU B 204 5555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 140 56.51 -152.82 REMARK 500 SER B 2 147.52 -170.35 REMARK 500 ASN B 140 60.75 -154.46 REMARK 500 LEU B 157 48.65 -92.62 REMARK 500 ASP B 208 52.05 -106.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 137 ARG A 138 -145.98 REMARK 500 ALA A 183 GLY A 184 -40.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 288 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYTHA.01365.A RELATED DB: TARGETDB DBREF 3SC4 A -3 281 PDB 3SC4 3SC4 -3 281 DBREF 3SC4 B -3 281 PDB 3SC4 3SC4 -3 281 SEQRES 1 A 285 GLY PRO GLY SER MET SER LEU ARG GLY LYS THR MET PHE SEQRES 2 A 285 ILE SER GLY GLY SER ARG GLY ILE GLY LEU ALA ILE ALA SEQRES 3 A 285 LYS ARG VAL ALA ALA ASP GLY ALA ASN VAL ALA LEU VAL SEQRES 4 A 285 ALA LYS SER ALA GLU PRO HIS PRO LYS LEU PRO GLY THR SEQRES 5 A 285 ILE TYR THR ALA ALA LYS GLU ILE GLU GLU ALA GLY GLY SEQRES 6 A 285 GLN ALA LEU PRO ILE VAL GLY ASP ILE ARG ASP GLY ASP SEQRES 7 A 285 ALA VAL ALA ALA ALA VAL ALA LYS THR VAL GLU GLN PHE SEQRES 8 A 285 GLY GLY ILE ASP ILE CYS VAL ASN ASN ALA SER ALA ILE SEQRES 9 A 285 ASN LEU GLY SER ILE GLU GLU VAL PRO LEU LYS ARG PHE SEQRES 10 A 285 ASP LEU MET ASN GLY ILE GLN VAL ARG GLY THR TYR ALA SEQRES 11 A 285 VAL SER GLN SER CYS ILE PRO HIS MET LYS GLY ARG ASP SEQRES 12 A 285 ASN PRO HIS ILE LEU THR LEU SER PRO PRO ILE ARG LEU SEQRES 13 A 285 GLU PRO LYS TRP LEU ARG PRO THR PRO TYR MET MET ALA SEQRES 14 A 285 LYS TYR GLY MET THR LEU CYS ALA LEU GLY ILE ALA GLU SEQRES 15 A 285 GLU LEU ARG ASP ALA GLY ILE ALA SER ASN THR LEU TRP SEQRES 16 A 285 PRO ARG THR THR VAL ALA THR ALA ALA VAL GLN ASN LEU SEQRES 17 A 285 LEU GLY GLY ASP GLU ALA MET ALA ARG SER ARG LYS PRO SEQRES 18 A 285 GLU VAL TYR ALA ASP ALA ALA TYR VAL VAL LEU ASN LYS SEQRES 19 A 285 PRO SER SER TYR THR GLY ASN THR LEU LEU CYS GLU ASP SEQRES 20 A 285 VAL LEU LEU GLU SER GLY VAL THR ASP LEU SER VAL TYR SEQRES 21 A 285 ASP CYS VAL PRO GLY SER GLU LEU GLY VAL ASP LEU TRP SEQRES 22 A 285 VAL ASP SER PRO ASN PRO PRO GLY TYR THR GLY PRO SEQRES 1 B 285 GLY PRO GLY SER MET SER LEU ARG GLY LYS THR MET PHE SEQRES 2 B 285 ILE SER GLY GLY SER ARG GLY ILE GLY LEU ALA ILE ALA SEQRES 3 B 285 LYS ARG VAL ALA ALA ASP GLY ALA ASN VAL ALA LEU VAL SEQRES 4 B 285 ALA LYS SER ALA GLU PRO HIS PRO LYS LEU PRO GLY THR SEQRES 5 B 285 ILE TYR THR ALA ALA LYS GLU ILE GLU GLU ALA GLY GLY SEQRES 6 B 285 GLN ALA LEU PRO ILE VAL GLY ASP ILE ARG ASP GLY ASP SEQRES 7 B 285 ALA VAL ALA ALA ALA VAL ALA LYS THR VAL GLU GLN PHE SEQRES 8 B 285 GLY GLY ILE ASP ILE CYS VAL ASN ASN ALA SER ALA ILE SEQRES 9 B 285 ASN LEU GLY SER ILE GLU GLU VAL PRO LEU LYS ARG PHE SEQRES 10 B 285 ASP LEU MET ASN GLY ILE GLN VAL ARG GLY THR TYR ALA SEQRES 11 B 285 VAL SER GLN SER CYS ILE PRO HIS MET LYS GLY ARG ASP SEQRES 12 B 285 ASN PRO HIS ILE LEU THR LEU SER PRO PRO ILE ARG LEU SEQRES 13 B 285 GLU PRO LYS TRP LEU ARG PRO THR PRO TYR MET MET ALA SEQRES 14 B 285 LYS TYR GLY MET THR LEU CYS ALA LEU GLY ILE ALA GLU SEQRES 15 B 285 GLU LEU ARG ASP ALA GLY ILE ALA SER ASN THR LEU TRP SEQRES 16 B 285 PRO ARG THR THR VAL ALA THR ALA ALA VAL GLN ASN LEU SEQRES 17 B 285 LEU GLY GLY ASP GLU ALA MET ALA ARG SER ARG LYS PRO SEQRES 18 B 285 GLU VAL TYR ALA ASP ALA ALA TYR VAL VAL LEU ASN LYS SEQRES 19 B 285 PRO SER SER TYR THR GLY ASN THR LEU LEU CYS GLU ASP SEQRES 20 B 285 VAL LEU LEU GLU SER GLY VAL THR ASP LEU SER VAL TYR SEQRES 21 B 285 ASP CYS VAL PRO GLY SER GLU LEU GLY VAL ASP LEU TRP SEQRES 22 B 285 VAL ASP SER PRO ASN PRO PRO GLY TYR THR GLY PRO HET EDO A 282 4 HET CL A 283 1 HET CL A 284 1 HET CL A 285 1 HET CL A 286 1 HET CL A 287 1 HET UNL A 288 1 HET UNL A 289 1 HET UNL A 290 1 HET UNL A 291 1 HET SO4 B 282 5 HET GOL B 283 6 HET CL B 284 1 HET CL B 285 1 HET CL B 286 1 HET CL B 287 1 HET CL B 288 1 HET UNL B 289 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM UNL UNKNOWN LIGAND HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 CL 10(CL 1-) FORMUL 13 SO4 O4 S 2- FORMUL 14 GOL C3 H8 O3 FORMUL 21 HOH *150(H2 O) HELIX 1 1 ARG A 15 ALA A 27 1 13 HELIX 2 2 THR A 48 GLY A 60 1 13 HELIX 3 3 ASP A 72 GLY A 88 1 17 HELIX 4 4 PRO A 109 ILE A 132 1 24 HELIX 5 5 PRO A 133 MET A 135 5 3 HELIX 6 6 GLU A 153 LEU A 157 5 5 HELIX 7 7 PRO A 159 LEU A 180 1 22 HELIX 8 8 ARG A 181 GLY A 184 5 4 HELIX 9 9 THR A 198 GLY A 206 1 9 HELIX 10 10 PRO A 217 ASN A 229 1 13 HELIX 11 11 CYS A 241 GLY A 249 1 9 HELIX 12 12 ASP A 252 ASP A 257 5 6 HELIX 13 13 ARG B 15 ALA B 27 1 13 HELIX 14 14 THR B 48 GLY B 60 1 13 HELIX 15 15 ASP B 72 GLY B 88 1 17 HELIX 16 16 PRO B 109 ILE B 132 1 24 HELIX 17 17 PRO B 133 MET B 135 5 3 HELIX 18 18 GLU B 153 LEU B 157 5 5 HELIX 19 19 PRO B 159 LEU B 180 1 22 HELIX 20 20 THR B 198 GLY B 206 1 9 HELIX 21 21 PRO B 217 ASN B 229 1 13 HELIX 22 22 CYS B 241 GLY B 249 1 9 HELIX 23 23 ASP B 252 ASP B 257 5 6 SHEET 1 A 7 GLN A 62 VAL A 67 0 SHEET 2 A 7 ASN A 31 ALA A 36 1 N LEU A 34 O ILE A 66 SHEET 3 A 7 THR A 7 SER A 11 1 N MET A 8 O ALA A 33 SHEET 4 A 7 ILE A 92 ASN A 95 1 O ILE A 92 N PHE A 9 SHEET 5 A 7 HIS A 142 THR A 145 1 O LEU A 144 N CYS A 93 SHEET 6 A 7 ALA A 186 TRP A 191 1 O ASN A 188 N THR A 145 SHEET 7 A 7 THR A 238 LEU A 240 1 O LEU A 239 N THR A 189 SHEET 1 B 7 GLN B 62 VAL B 67 0 SHEET 2 B 7 ASN B 31 ALA B 36 1 N LEU B 34 O ILE B 66 SHEET 3 B 7 THR B 7 SER B 11 1 N MET B 8 O ALA B 33 SHEET 4 B 7 ILE B 92 ASN B 95 1 O ILE B 92 N PHE B 9 SHEET 5 B 7 HIS B 142 THR B 145 1 O LEU B 144 N CYS B 93 SHEET 6 B 7 ALA B 186 TRP B 191 1 O ALA B 186 N ILE B 143 SHEET 7 B 7 THR B 238 LEU B 240 1 O LEU B 239 N THR B 189 CISPEP 1 ARG A 158 PRO A 159 0 -3.00 CISPEP 2 ARG B 158 PRO B 159 0 -10.78 SITE 1 AC1 6 ARG A 15 GLY A 16 ILE A 17 GLY A 18 SITE 2 AC1 6 ASN A 96 HOH A 351 SITE 1 AC2 1 GLY A 277 SITE 1 AC3 1 ARG A 71 SITE 1 AC4 1 ARG A 112 SITE 1 AC5 1 LYS A 155 SITE 1 AC6 2 ARG A 193 ASP A 271 SITE 1 AC7 4 GLY A 47 THR A 51 PRO B 109 ARG B 112 SITE 1 AC8 5 LYS A 44 GLY B 12 GLY B 13 SER B 14 SITE 2 AC8 5 ASN B 96 SITE 1 AC9 3 PRO B 109 LEU B 110 LYS B 111 SITE 1 BC1 1 GLY B 277 SITE 1 BC2 2 THR B 198 ALA B 199 SITE 1 BC3 1 LYS B 155 SITE 1 BC4 4 ARG B 151 ARG B 193 ASP B 271 HOH B 323 CRYST1 111.490 111.490 124.880 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008969 0.005178 0.000000 0.00000 SCALE2 0.000000 0.010357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008008 0.00000