data_3SC8 # _entry.id 3SC8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SC8 pdb_00003sc8 10.2210/pdb3sc8/pdb NDB NA1170 ? ? RCSB RCSB066025 ? ? WWPDB D_1000066025 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SC8 _pdbx_database_status.recvd_initial_deposition_date 2011-06-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Collie, G.W.' 1 'Promontorio, R.' 2 'Parkinson, G.N.' 3 # _citation.id primary _citation.title 'Structural basis for telomeric g-quadruplex targeting by naphthalene diimide ligands.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 2723 _citation.page_last 2731 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22280460 _citation.pdbx_database_id_DOI 10.1021/ja2102423 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Collie, G.W.' 1 ? primary 'Promontorio, R.' 2 ? primary 'Hampel, S.M.' 3 ? primary 'Micco, M.' 4 ? primary 'Neidle, S.' 5 ? primary 'Parkinson, G.N.' 6 ? # _cell.entry_id 3SC8 _cell.length_a 50.870 _cell.length_b 50.870 _cell.length_c 52.460 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SC8 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Human telomeric repeat sequence' 6983.497 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 non-polymer syn ;2,7-bis[3-(4-methylpiperazin-1-yl)propyl]-4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone ; 857.142 1 ? ? ? ? 4 water nat water 18.015 29 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can AGGGTTAGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DG n 1 22 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA sequence synthesized by standard by phosphoramidite chemistry' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3SC8 _struct_ref.pdbx_db_accession 3SC8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code AGGGTTAGGGTTAGGGTTAGGG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SC8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3SC8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 R8G non-polymer . ;2,7-bis[3-(4-methylpiperazin-1-yl)propyl]-4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone ; ? 'C46 H72 N12 O4' 857.142 # _exptl.entry_id 3SC8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.81 _exptl_crystal.density_percent_sol 56.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;20 % PEG400, 50 mM potassium chloride, 20 mM potassium cacodylate, 50 mM sodium cacodylate, 100 mM lithium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-04-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91730 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91730 # _reflns.entry_id 3SC8 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 26.23 _reflns.d_resolution_high 2.17 _reflns.number_obs 4385 _reflns.number_all 4385 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.033 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.1 _reflns.B_iso_Wilson_estimate 58.898 _reflns.pdbx_redundancy 9.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.17 _reflns_shell.d_res_low 2.23 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.59 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 9.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 324 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SC8 _refine.ls_number_reflns_obs 3467 _refine.ls_number_reflns_all 3467 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.30 _refine.ls_d_res_high 2.302 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.25989 _refine.ls_R_factor_all 0.25989 _refine.ls_R_factor_R_work 0.25839 _refine.ls_R_factor_R_free 0.28828 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.4 _refine.ls_number_reflns_R_free 161 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 45.257 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1KF1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.266 _refine.overall_SU_ML 0.223 _refine.overall_SU_B 16.573 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.389 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 447 _refine_hist.pdbx_number_atoms_ligand 65 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 541 _refine_hist.d_res_high 2.302 _refine_hist.d_res_low 10.30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.021 ? 572 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.048 3.000 ? 877 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.060 0.200 ? 84 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.011 0.020 ? 261 ? 'X-RAY DIFFRACTION' r_scbond_it 1.831 3.000 ? 572 ? 'X-RAY DIFFRACTION' r_scangle_it 2.884 4.500 ? 877 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.302 _refine_ls_shell.d_res_low 2.359 _refine_ls_shell.number_reflns_R_work 240 _refine_ls_shell.R_factor_R_work 0.404 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.481 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 11 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3SC8 _struct.title 'Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide BMSG-SH-3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SC8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'G-quadruplex, intramolecular, ligand-complex, telomeric, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 25 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? A DG 2 A K 26 1_555 ? ? ? ? ? ? ? 2.792 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 24 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc4 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 25 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc5 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 24 1_555 ? ? ? ? ? ? ? 2.592 ? ? metalc6 metalc ? ? A DG 8 O6 ? ? ? 1_555 C K . K ? ? A DG 8 A K 25 1_555 ? ? ? ? ? ? ? 2.903 ? ? metalc7 metalc ? ? A DG 8 O6 ? ? ? 1_555 D K . K ? ? A DG 8 A K 26 1_555 ? ? ? ? ? ? ? 2.784 ? ? metalc8 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 24 1_555 ? ? ? ? ? ? ? 3.049 ? ? metalc9 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 25 1_555 ? ? ? ? ? ? ? 2.797 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? A DG 10 A K 24 1_555 ? ? ? ? ? ? ? 2.638 ? ? metalc11 metalc ? ? A DG 14 O6 ? ? ? 1_555 C K . K ? ? A DG 14 A K 25 1_555 ? ? ? ? ? ? ? 2.968 ? ? metalc12 metalc ? ? A DG 14 O6 ? ? ? 1_555 D K . K ? ? A DG 14 A K 26 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc13 metalc ? ? A DG 15 O6 ? ? ? 1_555 B K . K ? ? A DG 15 A K 24 1_555 ? ? ? ? ? ? ? 3.157 ? ? metalc14 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 25 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc15 metalc ? ? A DG 16 O6 ? ? ? 1_555 B K . K ? ? A DG 16 A K 24 1_555 ? ? ? ? ? ? ? 2.583 ? ? metalc16 metalc ? ? A DG 20 O6 ? ? ? 1_555 C K . K ? ? A DG 20 A K 25 1_555 ? ? ? ? ? ? ? 3.109 ? ? metalc17 metalc ? ? A DG 20 O6 ? ? ? 1_555 D K . K ? ? A DG 20 A K 26 1_555 ? ? ? ? ? ? ? 3.137 ? ? metalc18 metalc ? ? A DG 21 O6 ? ? ? 1_555 B K . K ? ? A DG 21 A K 24 1_555 ? ? ? ? ? ? ? 3.109 ? ? metalc19 metalc ? ? A DG 21 O6 ? ? ? 1_555 C K . K ? ? A DG 21 A K 25 1_555 ? ? ? ? ? ? ? 2.597 ? ? metalc20 metalc ? ? A DG 22 O6 ? ? ? 1_555 B K . K ? ? A DG 22 A K 24 1_555 ? ? ? ? ? ? ? 2.666 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 24 ? 9 'BINDING SITE FOR RESIDUE K A 24' AC2 Software A K 25 ? 11 'BINDING SITE FOR RESIDUE K A 25' AC3 Software A K 26 ? 10 'BINDING SITE FOR RESIDUE K A 26' AC4 Software A R8G 23 ? 9 'BINDING SITE FOR RESIDUE R8G A 23' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 9 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 9 DG A 9 ? DG A 9 . ? 1_555 ? 4 AC1 9 DG A 10 ? DG A 10 . ? 1_555 ? 5 AC1 9 DG A 15 ? DG A 15 . ? 1_555 ? 6 AC1 9 DG A 16 ? DG A 16 . ? 1_555 ? 7 AC1 9 DG A 21 ? DG A 21 . ? 1_555 ? 8 AC1 9 DG A 22 ? DG A 22 . ? 1_555 ? 9 AC1 9 K C . ? K A 25 . ? 1_555 ? 10 AC2 11 DG A 2 ? DG A 2 . ? 1_555 ? 11 AC2 11 DG A 3 ? DG A 3 . ? 1_555 ? 12 AC2 11 DG A 8 ? DG A 8 . ? 1_555 ? 13 AC2 11 DG A 9 ? DG A 9 . ? 1_555 ? 14 AC2 11 DG A 14 ? DG A 14 . ? 1_555 ? 15 AC2 11 DG A 15 ? DG A 15 . ? 1_555 ? 16 AC2 11 DG A 20 ? DG A 20 . ? 1_555 ? 17 AC2 11 DG A 21 ? DG A 21 . ? 1_555 ? 18 AC2 11 K B . ? K A 24 . ? 1_555 ? 19 AC2 11 K D . ? K A 26 . ? 4_555 ? 20 AC2 11 K D . ? K A 26 . ? 1_555 ? 21 AC3 10 DG A 2 ? DG A 2 . ? 1_555 ? 22 AC3 10 DG A 2 ? DG A 2 . ? 4_555 ? 23 AC3 10 DG A 8 ? DG A 8 . ? 1_555 ? 24 AC3 10 DG A 8 ? DG A 8 . ? 4_555 ? 25 AC3 10 DG A 14 ? DG A 14 . ? 1_555 ? 26 AC3 10 DG A 14 ? DG A 14 . ? 4_555 ? 27 AC3 10 DG A 20 ? DG A 20 . ? 4_555 ? 28 AC3 10 DG A 20 ? DG A 20 . ? 1_555 ? 29 AC3 10 K C . ? K A 25 . ? 4_555 ? 30 AC3 10 K C . ? K A 25 . ? 1_555 ? 31 AC4 9 DG A 4 ? DG A 4 . ? 1_555 ? 32 AC4 9 DT A 5 ? DT A 5 . ? 1_555 ? 33 AC4 9 DT A 6 ? DT A 6 . ? 2_455 ? 34 AC4 9 DG A 10 ? DG A 10 . ? 1_555 ? 35 AC4 9 DT A 11 ? DT A 11 . ? 1_555 ? 36 AC4 9 DT A 12 ? DT A 12 . ? 6_455 ? 37 AC4 9 DA A 13 ? DA A 13 . ? 6_455 ? 38 AC4 9 DG A 16 ? DG A 16 . ? 1_555 ? 39 AC4 9 DG A 22 ? DG A 22 . ? 1_555 ? # _database_PDB_matrix.entry_id 3SC8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3SC8 _atom_sites.fract_transf_matrix[1][1] 0.019658 _atom_sites.fract_transf_matrix[1][2] 0.011350 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022699 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019062 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 ? ? ? A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DT 12 12 12 DT T A . n A 1 13 DA 13 13 13 DA A A . n A 1 14 DG 14 14 14 DG G A . n A 1 15 DG 15 15 15 DG G A . n A 1 16 DG 16 16 16 DG G A . n A 1 17 DT 17 17 17 DT T A . n A 1 18 DT 18 18 18 DT T A . n A 1 19 DA 19 19 19 DA A A . n A 1 20 DG 20 20 20 DG G A . n A 1 21 DG 21 21 21 DG G A . n A 1 22 DG 22 22 22 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 24 24 K K A . C 2 K 1 25 25 K K A . D 2 K 1 26 26 K K A . E 3 R8G 1 23 1 R8G R8G A . F 4 HOH 1 27 27 HOH HOH A . F 4 HOH 2 28 28 HOH HOH A . F 4 HOH 3 29 29 HOH HOH A . F 4 HOH 4 30 1 HOH HOH A . F 4 HOH 5 31 2 HOH HOH A . F 4 HOH 6 32 3 HOH HOH A . F 4 HOH 7 33 4 HOH HOH A . F 4 HOH 8 34 5 HOH HOH A . F 4 HOH 9 35 6 HOH HOH A . F 4 HOH 10 36 7 HOH HOH A . F 4 HOH 11 37 8 HOH HOH A . F 4 HOH 12 38 9 HOH HOH A . F 4 HOH 13 39 10 HOH HOH A . F 4 HOH 14 40 11 HOH HOH A . F 4 HOH 15 41 12 HOH HOH A . F 4 HOH 16 42 13 HOH HOH A . F 4 HOH 17 43 14 HOH HOH A . F 4 HOH 18 44 15 HOH HOH A . F 4 HOH 19 45 16 HOH HOH A . F 4 HOH 20 46 17 HOH HOH A . F 4 HOH 21 47 18 HOH HOH A . F 4 HOH 22 48 19 HOH HOH A . F 4 HOH 23 49 20 HOH HOH A . F 4 HOH 24 50 21 HOH HOH A . F 4 HOH 25 51 22 HOH HOH A . F 4 HOH 26 52 23 HOH HOH A . F 4 HOH 27 53 24 HOH HOH A . F 4 HOH 28 54 25 HOH HOH A . F 4 HOH 29 55 26 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id K _pdbx_struct_special_symmetry.auth_seq_id 26 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id K _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 73.3 ? 2 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 62.7 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 89.3 ? 4 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 126.8 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 74.6 ? 6 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 75.7 ? 7 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 102.1 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 155.4 ? 9 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 67.8 ? 10 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 90.4 ? 11 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 163.2 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 114.5 ? 13 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 129.8 ? 14 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 69.9 ? 15 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 76.9 ? 16 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 73.3 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 128.7 ? 18 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 108.2 ? 19 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 155.6 ? 20 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 70.0 ? 21 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 90.9 ? 22 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 94.0 ? 23 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 78.4 ? 24 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 156.2 ? 25 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 119.4 ? 26 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 126.2 ? 27 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 74.0 ? 28 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? C K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 66.3 ? 29 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 26 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 65.2 ? 30 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 109.5 ? 31 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 72.2 ? 32 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 26 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 73.9 ? 33 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 26 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 110.6 ? 34 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 26 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 72.0 ? 35 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 75.0 ? 36 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 68.7 ? 37 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 89.6 ? 38 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 123.7 ? 39 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.6 ? 40 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 66.3 ? 41 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 104.8 ? 42 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 150.8 ? 43 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 64.3 ? 44 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 84.4 ? 45 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 147.8 ? 46 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 131.2 ? 47 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 121.5 ? 48 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 86.1 ? 49 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 62.5 ? 50 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 68.3 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 136.2 ? 52 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 98.3 ? 53 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 149.2 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 64.8 ? 55 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 79.8 ? 56 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 96.4 ? 57 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 80.8 ? 58 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 164.1 ? 59 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 121.8 ? 60 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 127.5 ? 61 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 74.0 ? 62 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? B K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 80.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-15 2 'Structure model' 1 1 2012-02-22 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.value' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -19.0280 -14.7400 -0.9020 0.1706 0.3520 0.2173 0.1202 -0.0841 -0.1192 8.9591 6.3217 5.7714 0.5922 1.6308 1.3446 -0.2620 0.2123 0.9019 -0.8007 -0.0997 0.4667 -0.4757 -0.4314 0.3617 'X-RAY DIFFRACTION' 2 ? refined -19.3900 -21.8120 -0.6520 0.0700 0.1199 0.1663 0.0229 0.0455 -0.0543 14.0617 2.2653 8.3360 1.2752 9.7221 1.8100 -0.0325 -0.3200 -0.6067 -0.1961 0.0252 0.0023 0.0784 -0.3380 0.0073 'X-RAY DIFFRACTION' 3 ? refined -10.0900 -23.3570 11.8630 0.6613 0.2994 0.1999 0.1035 0.0649 0.0161 0.0432 4.9221 10.9385 -0.4507 0.5448 -6.0814 -0.1025 0.0122 0.0245 0.9255 -0.3739 -0.2077 0.0551 0.5806 0.4765 'X-RAY DIFFRACTION' 4 ? refined -5.6780 -7.8810 10.3380 0.4831 0.3550 0.2120 -0.2113 -0.0257 -0.0304 7.6711 10.2499 13.7216 -0.6815 3.9997 10.4854 -0.5242 0.6259 0.1871 0.1725 0.7920 -0.3823 -0.3538 1.3182 -0.2678 'X-RAY DIFFRACTION' 5 ? refined -7.7740 -7.9220 3.4800 0.4706 0.2512 0.2004 -0.1351 -0.0276 -0.0124 20.3792 3.8441 8.9480 5.2859 10.5318 4.1860 0.0168 -0.2229 0.8582 0.5714 -0.1345 -0.2014 -0.5280 0.3972 0.1177 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 2 ? ? A 5 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 6 ? ? A 9 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 10 ? ? A 14 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 15 ? ? A 18 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 19 ? ? A 22 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.35 108.30 3.05 0.30 N 2 1 "C1'" A DA 13 ? ? "O4'" A DA 13 ? ? "C4'" A DA 13 ? ? 102.20 110.10 -7.90 1.00 N 3 1 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 112.77 108.30 4.47 0.30 N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id DA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id DA _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 HOH O O N N 110 HOH H1 H N N 111 HOH H2 H N N 112 K K K N N 113 R8G CAA C N N 114 R8G CAB C N N 115 R8G CAC C N N 116 R8G CAD C N N 117 R8G OAE O N N 118 R8G OAF O N N 119 R8G OAG O N N 120 R8G OAH O N N 121 R8G CAI C Y N 122 R8G CAJ C Y N 123 R8G CAK C N N 124 R8G CAL C N N 125 R8G CAM C N N 126 R8G CAN C N N 127 R8G CAO C N N 128 R8G CAP C N N 129 R8G CAQ C N N 130 R8G CAR C N N 131 R8G CAS C N N 132 R8G CAT C N N 133 R8G CAU C N N 134 R8G CAV C N N 135 R8G CAW C N N 136 R8G CAX C N N 137 R8G CAY C N N 138 R8G CAZ C N N 139 R8G CBA C N N 140 R8G CBB C N N 141 R8G CBC C N N 142 R8G CBD C N N 143 R8G CBE C N N 144 R8G CBF C N N 145 R8G CBG C N N 146 R8G CBH C N N 147 R8G CBI C N N 148 R8G CBJ C N N 149 R8G CBK C N N 150 R8G CBL C N N 151 R8G NBM N N N 152 R8G NBN N N N 153 R8G CBO C Y N 154 R8G CBP C Y N 155 R8G CBQ C N N 156 R8G CBR C N N 157 R8G CBS C N N 158 R8G CBT C N N 159 R8G CBU C Y N 160 R8G CBV C Y N 161 R8G CBW C Y N 162 R8G CBX C Y N 163 R8G CBY C Y N 164 R8G CBZ C Y N 165 R8G NCA N N N 166 R8G NCB N N N 167 R8G NCC N N N 168 R8G NCD N N N 169 R8G NCE N N N 170 R8G NCF N N N 171 R8G NCG N N N 172 R8G NCH N N N 173 R8G NCI N N N 174 R8G NCJ N N N 175 R8G H1 H N N 176 R8G H2 H N N 177 R8G H3 H N N 178 R8G H4 H N N 179 R8G H5 H N N 180 R8G H6 H N N 181 R8G H7 H N N 182 R8G H8 H N N 183 R8G H9 H N N 184 R8G H10 H N N 185 R8G H11 H N N 186 R8G H12 H N N 187 R8G H13 H N N 188 R8G H14 H N N 189 R8G H15 H N N 190 R8G H16 H N N 191 R8G H17 H N N 192 R8G H18 H N N 193 R8G H19 H N N 194 R8G H20 H N N 195 R8G H21 H N N 196 R8G H22 H N N 197 R8G H23 H N N 198 R8G H24 H N N 199 R8G H25 H N N 200 R8G H26 H N N 201 R8G H27 H N N 202 R8G H28 H N N 203 R8G H29 H N N 204 R8G H30 H N N 205 R8G H31 H N N 206 R8G H32 H N N 207 R8G H33 H N N 208 R8G H34 H N N 209 R8G H35 H N N 210 R8G H36 H N N 211 R8G H37 H N N 212 R8G H38 H N N 213 R8G H39 H N N 214 R8G H40 H N N 215 R8G H41 H N N 216 R8G H42 H N N 217 R8G H43 H N N 218 R8G H44 H N N 219 R8G H45 H N N 220 R8G H46 H N N 221 R8G H47 H N N 222 R8G H48 H N N 223 R8G H49 H N N 224 R8G H50 H N N 225 R8G H51 H N N 226 R8G H52 H N N 227 R8G H53 H N N 228 R8G H54 H N N 229 R8G H55 H N N 230 R8G H56 H N N 231 R8G H57 H N N 232 R8G H58 H N N 233 R8G H59 H N N 234 R8G H60 H N N 235 R8G H61 H N N 236 R8G H62 H N N 237 R8G H63 H N N 238 R8G H64 H N N 239 R8G H65 H N N 240 R8G H66 H N N 241 R8G H67 H N N 242 R8G H68 H N N 243 R8G H69 H N N 244 R8G H70 H N N 245 R8G H71 H N N 246 R8G H72 H N N 247 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 HOH O H1 sing N N 115 HOH O H2 sing N N 116 R8G CAB NCB sing N N 117 R8G NCB CAX sing N N 118 R8G NCB CAW sing N N 119 R8G CAX CBF sing N N 120 R8G CAW CBE sing N N 121 R8G CBF NCF sing N N 122 R8G CBE NCF sing N N 123 R8G NCF CAR sing N N 124 R8G CAR CAL sing N N 125 R8G CAL CAP sing N N 126 R8G CAP NBN sing N N 127 R8G CBA CBI sing N N 128 R8G CBA NCD sing N N 129 R8G CAD NCD sing N N 130 R8G CBI NCH sing N N 131 R8G NBN CBP sing N N 132 R8G NCD CBB sing N N 133 R8G OAH CBT doub N N 134 R8G CBP CAI doub Y N 135 R8G CBP CBX sing Y N 136 R8G CAI CBU sing Y N 137 R8G NCH CAT sing N N 138 R8G NCH CBJ sing N N 139 R8G CBB CBJ sing N N 140 R8G OAE CBQ doub N N 141 R8G CBT CBX sing N N 142 R8G CBT NCJ sing N N 143 R8G CBX CBZ doub Y N 144 R8G CAN CAT sing N N 145 R8G CAN CBL sing N N 146 R8G CBU CBQ sing N N 147 R8G CBU CBY doub Y N 148 R8G CBQ NCI sing N N 149 R8G CBL NCJ sing N N 150 R8G NCJ CBR sing N N 151 R8G CBZ CBY sing Y N 152 R8G CBZ CBV sing Y N 153 R8G CBY CBW sing Y N 154 R8G NCI CBK sing N N 155 R8G NCI CBS sing N N 156 R8G CBK CAM sing N N 157 R8G CAM CAS sing N N 158 R8G CBR CBV sing N N 159 R8G CBR OAF doub N N 160 R8G CBV CAJ doub Y N 161 R8G CBW CBS sing N N 162 R8G CBW CBO doub Y N 163 R8G CBS OAG doub N N 164 R8G CAJ CBO sing Y N 165 R8G CAS NCG sing N N 166 R8G NCG CBG sing N N 167 R8G NCG CBH sing N N 168 R8G CBO NBM sing N N 169 R8G CAZ CBH sing N N 170 R8G CAZ NCC sing N N 171 R8G CAY CBG sing N N 172 R8G CAY NCC sing N N 173 R8G NCC CAC sing N N 174 R8G NBM CAO sing N N 175 R8G CAO CAK sing N N 176 R8G CAK CAQ sing N N 177 R8G CAQ NCE sing N N 178 R8G CBC NCE sing N N 179 R8G CBC CAU sing N N 180 R8G NCE CBD sing N N 181 R8G CAU NCA sing N N 182 R8G NCA CAA sing N N 183 R8G NCA CAV sing N N 184 R8G CBD CAV sing N N 185 R8G CAA H1 sing N N 186 R8G CAA H2 sing N N 187 R8G CAA H3 sing N N 188 R8G CAB H4 sing N N 189 R8G CAB H5 sing N N 190 R8G CAB H6 sing N N 191 R8G CAC H7 sing N N 192 R8G CAC H8 sing N N 193 R8G CAC H9 sing N N 194 R8G CAD H10 sing N N 195 R8G CAD H11 sing N N 196 R8G CAD H12 sing N N 197 R8G CAI H13 sing N N 198 R8G CAJ H14 sing N N 199 R8G CAK H15 sing N N 200 R8G CAK H16 sing N N 201 R8G CAL H17 sing N N 202 R8G CAL H18 sing N N 203 R8G CAM H19 sing N N 204 R8G CAM H20 sing N N 205 R8G CAN H21 sing N N 206 R8G CAN H22 sing N N 207 R8G CAO H23 sing N N 208 R8G CAO H24 sing N N 209 R8G CAP H25 sing N N 210 R8G CAP H26 sing N N 211 R8G CAQ H27 sing N N 212 R8G CAQ H28 sing N N 213 R8G CAR H29 sing N N 214 R8G CAR H30 sing N N 215 R8G CAS H31 sing N N 216 R8G CAS H32 sing N N 217 R8G CAT H33 sing N N 218 R8G CAT H34 sing N N 219 R8G CAU H35 sing N N 220 R8G CAU H36 sing N N 221 R8G CAV H37 sing N N 222 R8G CAV H38 sing N N 223 R8G CAW H39 sing N N 224 R8G CAW H40 sing N N 225 R8G CAX H41 sing N N 226 R8G CAX H42 sing N N 227 R8G CAY H43 sing N N 228 R8G CAY H44 sing N N 229 R8G CAZ H45 sing N N 230 R8G CAZ H46 sing N N 231 R8G CBA H47 sing N N 232 R8G CBA H48 sing N N 233 R8G CBB H49 sing N N 234 R8G CBB H50 sing N N 235 R8G CBC H51 sing N N 236 R8G CBC H52 sing N N 237 R8G CBD H53 sing N N 238 R8G CBD H54 sing N N 239 R8G CBE H55 sing N N 240 R8G CBE H56 sing N N 241 R8G CBF H57 sing N N 242 R8G CBF H58 sing N N 243 R8G CBG H59 sing N N 244 R8G CBG H60 sing N N 245 R8G CBH H61 sing N N 246 R8G CBH H62 sing N N 247 R8G CBI H63 sing N N 248 R8G CBI H64 sing N N 249 R8G CBJ H65 sing N N 250 R8G CBJ H66 sing N N 251 R8G CBK H67 sing N N 252 R8G CBK H68 sing N N 253 R8G CBL H69 sing N N 254 R8G CBL H70 sing N N 255 R8G NBM H71 sing N N 256 R8G NBN H72 sing N N 257 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3SC8 'double helix' 3SC8 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 14 1_555 A DG 20 1_555 1.748 3.631 -0.404 3.185 -2.284 -93.084 1 A_DG14:DG20_A A 14 ? A 20 ? 6 3 1 A DG 15 1_555 A DG 21 1_555 1.768 3.312 0.230 2.054 -8.739 -87.694 2 A_DG15:DG21_A A 15 ? A 21 ? 6 3 1 A DG 16 1_555 A DG 22 1_555 1.441 3.502 -0.872 15.759 -9.105 -91.839 3 A_DG16:DG22_A A 16 ? A 22 ? 6 3 1 A DG 10 1_555 A DG 4 1_555 -1.478 -3.384 -0.045 -10.498 7.703 88.751 4 A_DG10:DG4_A A 10 ? A 4 ? 6 3 1 A DG 9 1_555 A DG 3 1_555 -1.622 -3.552 0.074 -1.154 5.256 88.560 5 A_DG9:DG3_A A 9 ? A 3 ? 6 3 1 A DG 8 1_555 A DG 2 1_555 -1.227 -3.613 0.029 1.202 3.543 88.578 6 A_DG8:DG2_A A 8 ? A 2 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 14 1_555 A DG 20 1_555 A DG 15 1_555 A DG 21 1_555 -0.122 -0.775 3.330 -4.654 3.444 33.946 -1.850 -0.525 3.226 5.845 7.899 34.422 1 AA_DG14DG15:DG21DG20_AA A 14 ? A 20 ? A 15 ? A 21 ? 1 A DG 15 1_555 A DG 21 1_555 A DG 16 1_555 A DG 22 1_555 -0.821 -0.604 3.178 8.010 4.688 24.221 -2.537 3.864 2.616 10.684 -18.255 25.914 2 AA_DG15DG16:DG22DG21_AA A 15 ? A 21 ? A 16 ? A 22 ? 1 A DG 16 1_555 A DG 22 1_555 A DG 10 1_555 A DG 4 1_555 1.808 3.593 0.100 11.018 -12.951 -179.283 -1.796 0.904 0.101 6.476 5.509 -179.291 3 AA_DG16DG10:DG4DG22_AA A 16 ? A 22 ? A 10 ? A 4 ? 1 A DG 10 1_555 A DG 4 1_555 A DG 9 1_555 A DG 3 1_555 0.494 0.551 -3.224 -0.282 -6.702 -28.444 -2.499 1.040 -3.013 13.404 -0.563 -29.209 4 AA_DG10DG9:DG3DG4_AA A 10 ? A 4 ? A 9 ? A 3 ? 1 A DG 9 1_555 A DG 3 1_555 A DG 8 1_555 A DG 2 1_555 0.389 1.021 -3.275 -1.513 -1.717 -30.039 -2.310 1.055 -3.190 3.306 -2.914 -30.124 5 AA_DG9DG8:DG2DG3_AA A 9 ? A 3 ? A 8 ? A 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 ;2,7-bis[3-(4-methylpiperazin-1-yl)propyl]-4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone ; R8G 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1KF1 _pdbx_initial_refinement_model.details 'PDB ENTRY 1KF1' #