HEADER HYDROLASE 08-JUN-11 3SCY TITLE CRYSTAL STRUCTURE OF A PUTATIVE 6-PHOSPHOGLUCONOLACTONASE (BF1038) TITLE 2 FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL BACTERIAL 6-PHOSPHOGLUCONOLACTONASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 25-384; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: ATCC 25285 / NCTC 9343; SOURCE 5 GENE: BF1038; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 7-BLADED BETA-PROPELLER, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3SCY 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3SCY 1 REMARK REVDAT 2 24-DEC-14 3SCY 1 TITLE REVDAT 1 20-JUL-11 3SCY 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL BACTERIAL JRNL TITL 2 6-PHOSPHOGLUCONOLACTONASE (BF1038) FROM BACTEROIDES FRAGILIS JRNL TITL 3 NCTC 9343 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 50438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2559 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3608 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2141 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3436 REMARK 3 BIN R VALUE (WORKING SET) : 0.2129 REMARK 3 BIN FREE R VALUE : 0.2402 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.77 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.29750 REMARK 3 B22 (A**2) : -2.29750 REMARK 3 B33 (A**2) : 4.59510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2868 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3926 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1352 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 75 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 443 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2868 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 400 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3661 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.55 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.49 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -7.6948 29.6250 16.3729 REMARK 3 T TENSOR REMARK 3 T11: -0.0347 T22: -0.0963 REMARK 3 T33: -0.0705 T12: 0.0205 REMARK 3 T13: 0.0186 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.8451 L22: 0.5290 REMARK 3 L33: 2.2436 L12: 0.0212 REMARK 3 L13: -0.2988 L23: 0.5697 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: -0.0166 S13: -0.0465 REMARK 3 S21: 0.0350 S22: -0.0795 S23: 0.0155 REMARK 3 S31: -0.0123 S32: 0.0108 S33: 0.0375 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. MAGNESIUM (MG) AND SODIUM (NA) FROM THE REMARK 3 CRYSTALLIZATION AND PURIFICATIONS SOLUTIONS RESPECTIVELY HAVE REMARK 3 BEEN MODELED INTO THE STRUCTURE. 4. AN UNNOWN LIGAND (UNL) HAS REMARK 3 BEEN MODELED INTO THE PUTATIVE ACTIVE SITE. 5. THE REFINEMENT REMARK 3 WAS RESTRAINED AGAINST THE MAD PHASES. REMARK 4 REMARK 4 3SCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97927 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50531 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 27.054 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.00% POLYETHYLENE GLYCOL 4000, 0.20M REMARK 280 MAGNESIUM CHLORIDE, 0.1M TRIS PH 8.5, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.29000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.14500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.14500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 144.29000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 25 REMARK 465 GLN A 26 REMARK 465 PRO A 27 REMARK 465 THR A 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 LYS A 107 CE NZ REMARK 470 GLU A 108 CD OE1 OE2 REMARK 470 LYS A 303 CE NZ REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 LYS A 373 CG CD CE NZ REMARK 470 ASP A 384 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 74 57.58 38.07 REMARK 500 LYS A 95 -145.66 -124.91 REMARK 500 ARG A 237 -81.50 -114.46 REMARK 500 LEU A 302 -47.49 76.98 REMARK 500 HIS A 330 64.01 69.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 388 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 325 OE1 REMARK 620 2 LEU A 365 O 88.4 REMARK 620 3 HOH A 389 O 102.8 93.6 REMARK 620 4 HOH A 415 O 89.9 174.4 81.6 REMARK 620 5 HOH A 498 O 99.4 93.7 156.8 91.8 REMARK 620 6 HOH A 499 O 170.0 89.8 67.5 91.0 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 386 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 520 O REMARK 620 2 HOH A 658 O 88.3 REMARK 620 3 HOH A 659 O 88.6 100.9 REMARK 620 4 HOH A 660 O 95.3 169.6 89.0 REMARK 620 5 HOH A 661 O 83.3 84.4 170.2 86.4 REMARK 620 6 HOH A 663 O 173.6 88.1 97.3 87.3 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 387 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 456 O REMARK 620 2 HOH A 527 O 93.5 REMARK 620 3 HOH A 594 O 95.3 167.0 REMARK 620 4 HOH A 602 O 93.1 83.2 86.9 REMARK 620 5 HOH A 669 O 166.9 74.0 97.7 89.2 REMARK 620 6 HOH A 670 O 89.6 94.3 95.2 176.4 87.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 387 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 388 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390120 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 25-384 OF THE TARGET REMARK 999 SEQUENCE. DBREF 3SCY A 25 384 UNP Q5LGG4 Q5LGG4_BACFN 25 384 SEQADV 3SCY GLY A 0 UNP Q5LGG4 EXPRESSION TAG SEQRES 1 A 361 GLY ALA GLN PRO THR ASP PRO SER THR THR ASP SER GLU SEQRES 2 A 361 LEU THR MSE LEU VAL GLY THR TYR THR SER GLY ASN SER SEQRES 3 A 361 LYS GLY ILE TYR THR PHE ARG PHE ASN GLU GLU THR GLY SEQRES 4 A 361 GLU SER LEU PRO LEU SER ASP ALA GLU VAL ALA ASN PRO SEQRES 5 A 361 SER TYR LEU ILE PRO SER ALA ASP GLY LYS PHE VAL TYR SEQRES 6 A 361 SER VAL ASN GLU PHE SER LYS ASP GLN ALA ALA VAL SER SEQRES 7 A 361 ALA PHE ALA PHE ASP LYS GLU LYS GLY THR LEU HIS LEU SEQRES 8 A 361 LEU ASN THR GLN LYS THR MSE GLY ALA ASP PRO CYS TYR SEQRES 9 A 361 LEU THR THR ASN GLY LYS ASN ILE VAL THR ALA ASN TYR SEQRES 10 A 361 SER GLY GLY SER ILE THR VAL PHE PRO ILE GLY GLN ASP SEQRES 11 A 361 GLY ALA LEU LEU PRO ALA SER ASP VAL ILE GLU PHE LYS SEQRES 12 A 361 GLY SER GLY PRO ASP LYS GLU ARG GLN THR MSE PRO HIS SEQRES 13 A 361 LEU HIS CYS VAL ARG ILE THR PRO ASP GLY LYS TYR LEU SEQRES 14 A 361 LEU ALA ASP ASP LEU GLY THR ASP GLN ILE HIS LYS PHE SEQRES 15 A 361 ASN ILE ASN PRO ASN ALA ASN ALA ASP ASN LYS GLU LYS SEQRES 16 A 361 PHE LEU THR LYS GLY THR PRO GLU ALA PHE LYS VAL ALA SEQRES 17 A 361 PRO GLY SER GLY PRO ARG HIS LEU ILE PHE ASN SER ASP SEQRES 18 A 361 GLY LYS PHE ALA TYR LEU ILE ASN GLU ILE GLY GLY THR SEQRES 19 A 361 VAL ILE ALA PHE ARG TYR ALA ASP GLY MSE LEU ASP GLU SEQRES 20 A 361 ILE GLN THR VAL ALA ALA ASP THR VAL ASN ALA GLN GLY SEQRES 21 A 361 SER GLY ASP ILE HIS LEU SER PRO ASP GLY LYS TYR LEU SEQRES 22 A 361 TYR ALA SER ASN ARG LEU LYS ALA ASP GLY VAL ALA ILE SEQRES 23 A 361 PHE LYS VAL ASP GLU THR ASN GLY THR LEU THR LYS VAL SEQRES 24 A 361 GLY TYR GLN LEU THR GLY ILE HIS PRO ARG ASN PHE ILE SEQRES 25 A 361 ILE THR PRO ASN GLY LYS TYR LEU LEU VAL ALA CYS ARG SEQRES 26 A 361 ASP THR ASN VAL ILE GLN ILE PHE GLU ARG ASP GLN ALA SEQRES 27 A 361 THR GLY LEU LEU THR ASP ILE LYS LYS ASP ILE LYS VAL SEQRES 28 A 361 ASP LYS PRO VAL CYS LEU LYS PHE VAL ASP MODRES 3SCY MSE A 39 MET SELENOMETHIONINE MODRES 3SCY MSE A 121 MET SELENOMETHIONINE MODRES 3SCY MSE A 177 MET SELENOMETHIONINE MODRES 3SCY MSE A 267 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 121 8 HET MSE A 177 8 HET MSE A 267 18 HET UNL A 385 6 HET MG A 386 1 HET MG A 387 1 HET NA A 388 1 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 NA NA 1+ FORMUL 6 HOH *356(H2 O) HELIX 1 1 SER A 31 ASP A 34 5 4 SHEET 1 A 4 SER A 64 GLU A 71 0 SHEET 2 A 4 GLY A 51 ASN A 58 -1 N ARG A 56 O LEU A 65 SHEET 3 A 4 GLU A 36 THR A 43 -1 N LEU A 37 O PHE A 57 SHEET 4 A 4 PRO A 377 VAL A 383 -1 O VAL A 378 N GLY A 42 SHEET 1 B 4 LEU A 78 PRO A 80 0 SHEET 2 B 4 PHE A 86 ASN A 91 -1 O TYR A 88 N ILE A 79 SHEET 3 B 4 ALA A 99 ASP A 106 -1 O PHE A 103 N VAL A 87 SHEET 4 B 4 THR A 111 LYS A 119 -1 O LEU A 115 N ALA A 102 SHEET 1 C 4 THR A 129 THR A 130 0 SHEET 2 C 4 ASN A 134 ASN A 139 -1 O VAL A 136 N THR A 129 SHEET 3 C 4 SER A 144 PRO A 149 -1 O SER A 144 N ASN A 139 SHEET 4 C 4 ASP A 161 GLU A 164 -1 O ILE A 163 N ILE A 145 SHEET 1 D 4 LEU A 180 ILE A 185 0 SHEET 2 D 4 TYR A 191 ASP A 196 -1 O LEU A 193 N ARG A 184 SHEET 3 D 4 GLN A 201 ILE A 207 -1 O GLN A 201 N ASP A 196 SHEET 4 D 4 LEU A 220 LYS A 229 -1 O THR A 221 N ASN A 206 SHEET 1 E 4 PRO A 236 PHE A 241 0 SHEET 2 E 4 PHE A 247 ASN A 252 -1 O TYR A 249 N ILE A 240 SHEET 3 E 4 THR A 257 ALA A 264 -1 O THR A 257 N ASN A 252 SHEET 4 E 4 MSE A 267 ALA A 275 -1 O ASP A 269 N ARG A 262 SHEET 1 F 4 SER A 284 LEU A 289 0 SHEET 2 F 4 TYR A 295 ASN A 300 -1 O TYR A 297 N HIS A 288 SHEET 3 F 4 GLY A 306 VAL A 312 -1 O ALA A 308 N ALA A 298 SHEET 4 F 4 LEU A 319 LEU A 326 -1 O VAL A 322 N ILE A 309 SHEET 1 G 4 ASN A 333 ILE A 336 0 SHEET 2 G 4 TYR A 342 CYS A 347 -1 O LEU A 344 N ILE A 335 SHEET 3 G 4 VAL A 352 ARG A 358 -1 O VAL A 352 N CYS A 347 SHEET 4 G 4 LEU A 365 ASP A 367 -1 O THR A 366 N GLU A 357 SHEET 1 H 4 ASN A 333 ILE A 336 0 SHEET 2 H 4 TYR A 342 CYS A 347 -1 O LEU A 344 N ILE A 335 SHEET 3 H 4 VAL A 352 ARG A 358 -1 O VAL A 352 N CYS A 347 SHEET 4 H 4 ILE A 372 LYS A 373 -1 O ILE A 372 N ILE A 353 LINK C THR A 38 N MSE A 39 1555 1555 1.32 LINK C MSE A 39 N LEU A 40 1555 1555 1.32 LINK C THR A 120 N MSE A 121 1555 1555 1.36 LINK C MSE A 121 N GLY A 122 1555 1555 1.33 LINK C THR A 176 N MSE A 177 1555 1555 1.35 LINK C MSE A 177 N PRO A 178 1555 1555 1.35 LINK C GLY A 266 N MSE A 267 1555 1555 1.35 LINK C MSE A 267 N LEU A 268 1555 1555 1.33 LINK OE1 GLN A 325 NA NA A 388 1555 1555 2.23 LINK O LEU A 365 NA NA A 388 1555 1555 2.36 LINK MG MG A 386 O HOH A 520 1555 1555 2.16 LINK MG MG A 386 O HOH A 658 1555 1555 2.09 LINK MG MG A 386 O HOH A 659 1555 1555 1.95 LINK MG MG A 386 O HOH A 660 1555 1555 2.01 LINK MG MG A 386 O HOH A 661 1555 1555 2.05 LINK MG MG A 386 O HOH A 663 1555 1555 2.15 LINK MG MG A 387 O HOH A 456 1555 1555 2.05 LINK MG MG A 387 O HOH A 527 1555 1555 2.25 LINK MG MG A 387 O HOH A 594 1555 1555 2.21 LINK MG MG A 387 O HOH A 602 1555 1555 2.12 LINK MG MG A 387 O HOH A 669 1555 1555 2.12 LINK MG MG A 387 O HOH A 670 1555 1555 2.18 LINK NA NA A 388 O HOH A 389 1555 1555 2.65 LINK NA NA A 388 O HOH A 415 1555 1555 2.58 LINK NA NA A 388 O HOH A 498 1555 1555 2.27 LINK NA NA A 388 O HOH A 499 1555 1555 2.65 CISPEP 1 THR A 224 PRO A 225 0 -6.44 SITE 1 AC1 8 LYS A 50 ASP A 69 HOH A 520 HOH A 658 SITE 2 AC1 8 HOH A 659 HOH A 660 HOH A 661 HOH A 663 SITE 1 AC2 6 HOH A 456 HOH A 527 HOH A 594 HOH A 602 SITE 2 AC2 6 HOH A 669 HOH A 670 SITE 1 AC3 6 GLN A 325 LEU A 365 HOH A 389 HOH A 415 SITE 2 AC3 6 HOH A 498 HOH A 499 CRYST1 49.463 49.463 216.435 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020217 0.011672 0.000000 0.00000 SCALE2 0.000000 0.023345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004620 0.00000