data_3SD1 # _entry.id 3SD1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3SD1 NDB NA1168 RCSB RCSB066054 WWPDB D_1000066054 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2014-03-19 _pdbx_database_PDB_obs_spr.pdb_id 4LVV _pdbx_database_PDB_obs_spr.replace_pdb_id 3SD1 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3SD3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3SD1 _pdbx_database_status.status_code OBS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-08 _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Reyes, F.E.' 1 'Trausch, J.J.' 2 'Ceres, P.' 3 'Batey, R.T.' 4 # _citation.id primary _citation.title 'The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.' _citation.journal_abbrev Structure _citation.journal_volume 19 _citation.page_first 1413 _citation.page_last 1423 _citation.year 2011 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21906956 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.06.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Trausch, J.J.' 1 primary 'Ceres, P.' 2 primary 'Reyes, F.E.' 3 primary 'Batey, R.T.' 4 # _cell.length_a 27.620 _cell.length_b 68.190 _cell.length_c 157.550 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3SD1 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3SD1 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Tetrahydrofolate riboswitch' 28849.145 1 ? ? ? ? 2 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 7 ? ? ? ? 3 non-polymer syn 'N-[4-({[(6S)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid' 473.439 2 ? ? ? ? 4 water nat water 18.015 40 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 G n 1 5 A n 1 6 G n 1 7 U n 1 8 A n 1 9 G n 1 10 A n 1 11 U n 1 12 G n 1 13 A n 1 14 U n 1 15 U n 1 16 C n 1 17 G n 1 18 C n 1 19 G n 1 20 U n 1 21 U n 1 22 A n 1 23 A n 1 24 G n 1 25 U n 1 26 G n 1 27 U n 1 28 G n 1 29 U n 1 30 G n 1 31 U n 1 32 G n 1 33 A n 1 34 A n 1 35 U n 1 36 G n 1 37 G n 1 38 G n 1 39 A n 1 40 U n 1 41 G n 1 42 U n 1 43 C n 1 44 G n 1 45 U n 1 46 C n 1 47 A n 1 48 C n 1 49 A n 1 50 C n 1 51 A n 1 52 A n 1 53 C n 1 54 G n 1 55 A n 1 56 A n 1 57 G n 1 58 C n 1 59 G n 1 60 A n 1 61 G n 1 62 A n 1 63 G n 1 64 C n 1 65 G n 1 66 C n 1 67 G n 1 68 G n 1 69 U n 1 70 G n 1 71 A n 1 72 A n 1 73 U n 1 74 C n 1 75 A n 1 76 U n 1 77 U n 1 78 G n 1 79 C n 1 80 A n 1 81 U n 1 82 C n 1 83 C n 1 84 G n 1 85 C n 1 86 U n 1 87 C n 1 88 C n 1 89 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized with T7 RNA polymerase from a recombinant PCR template' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3SD1 _struct_ref.pdbx_db_accession 3SD1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SD1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3SD1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 89 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 89 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 FOZ non-polymer . 'N-[4-({[(6S)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid' ? 'C20 H23 N7 O7' 473.439 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.crystals_number 1 _exptl.entry_id 3SD1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 52.17 _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 303 _exptl_crystal_grow.pdbx_details ;2,4-methyl-pentanediol, spermine, sodium cacodylate, sodium chloride, dithiothreitol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 303K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-12-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1051 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_wavelength_list 1.1051 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 # _reflns.entry_id 3SD1 _reflns.d_resolution_high 2.27 _reflns.d_resolution_low 52.517 _reflns.number_all ? _reflns.number_obs 13840 _reflns.pdbx_netI_over_sigmaI 14.300 _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_redundancy 4.100 _reflns.percent_possible_obs 96.400 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.270 2.330 ? 3701 ? 0.790 0.900 0.790 ? 3.600 ? 1027 98.900 1 1 2.330 2.400 ? 4128 ? 0.560 1.300 0.560 ? 4.200 ? 981 98.600 2 1 2.400 2.470 ? 4170 ? 0.406 1.700 0.406 ? 4.200 ? 983 98.100 3 1 2.470 2.540 ? 4046 ? 0.327 2.100 0.327 ? 4.200 ? 964 97.800 4 1 2.540 2.620 ? 3740 ? 0.223 3.200 0.223 ? 4.200 ? 887 97.500 5 1 2.620 2.720 ? 3736 ? 0.178 4.000 0.178 ? 4.200 ? 889 97.500 6 1 2.720 2.820 ? 3558 ? 0.141 5.000 0.141 ? 4.200 ? 846 97.200 7 1 2.820 2.930 ? 3402 ? 0.105 6.700 0.105 ? 4.200 ? 803 96.900 8 1 2.930 3.070 ? 3335 ? 0.082 6.700 0.082 ? 4.200 ? 803 96.100 9 1 3.070 3.210 ? 3056 ? 0.056 11.500 0.056 ? 4.300 ? 711 95.500 10 1 3.210 3.390 ? 2991 ? 0.054 8.600 0.054 ? 4.200 ? 720 95.100 11 1 3.390 3.590 ? 2843 ? 0.050 10.300 0.050 ? 4.200 ? 670 95.700 12 1 3.590 3.840 ? 2692 ? 0.045 11.300 0.045 ? 4.200 ? 641 96.100 13 1 3.840 4.150 ? 2452 ? 0.040 13.100 0.040 ? 4.200 ? 586 95.400 14 1 4.150 4.550 ? 2255 ? 0.038 14.800 0.038 ? 4.100 ? 551 93.800 15 1 4.550 5.080 ? 2017 ? 0.036 17.100 0.036 ? 4.100 ? 487 95.000 16 1 5.080 5.870 ? 1759 ? 0.035 15.700 0.035 ? 4.000 ? 444 93.700 17 1 5.870 7.190 ? 1502 ? 0.032 18.700 0.032 ? 3.900 ? 385 93.500 18 1 7.190 10.170 ? 1176 ? 0.031 16.500 0.031 ? 4.000 ? 292 91.500 19 1 10.170 52.517 ? 599 ? 0.031 20.000 0.031 ? 3.500 ? 170 84.600 20 1 # _refine.entry_id 3SD1 _refine.ls_d_res_high 2.27 _refine.ls_d_res_low 28.5970 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 87.2700 _refine.ls_number_reflns_obs 13840 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details 'Via phenix.refine' _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2393 _refine.ls_R_factor_R_work 0.2355 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2736 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9400 _refine.ls_number_reflns_R_free 2293 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 33.6554 _refine.solvent_model_param_bsol 20.0020 _refine.solvent_model_param_ksol 0.3390 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 27.0209 _refine.aniso_B[2][2] -0.1805 _refine.aniso_B[3][3] 10.7461 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4900 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 0.9000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.6100 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7279 _refine.B_iso_max 69.450 _refine.B_iso_min 14.580 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1913 _refine_hist.pdbx_number_atoms_ligand 99 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 2052 _refine_hist.d_res_high 2.27 _refine_hist.d_res_low 28.5970 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2238 0.002 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3521 0.513 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 447 0.053 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 97 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1109 20.971 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.27 2.3225 16 74.0000 1111 . 0.5074 0.5943 . 124 . 1235 . . 'X-RAY DIFFRACTION' 2.3225 2.3765 16 80.0000 1173 . 0.4290 0.4510 . 132 . 1305 . . 'X-RAY DIFFRACTION' 2.3765 2.4359 16 84.0000 1255 . 0.4252 0.4854 . 140 . 1395 . . 'X-RAY DIFFRACTION' 2.4359 2.5018 16 87.0000 1305 . 0.3935 0.4054 . 150 . 1455 . . 'X-RAY DIFFRACTION' 2.5018 2.5753 16 86.0000 1266 . 0.3530 0.4193 . 129 . 1395 . . 'X-RAY DIFFRACTION' 2.5753 2.6584 16 89.0000 1335 . 0.3487 0.4161 . 140 . 1475 . . 'X-RAY DIFFRACTION' 2.6584 2.7534 16 89.0000 1350 . 0.3483 0.3609 . 157 . 1507 . . 'X-RAY DIFFRACTION' 2.7534 2.8635 16 89.0000 1282 . 0.3333 0.3878 . 134 . 1416 . . 'X-RAY DIFFRACTION' 2.8635 2.9937 16 90.0000 1356 . 0.2949 0.3185 . 150 . 1506 . . 'X-RAY DIFFRACTION' 2.9937 3.1513 16 90.0000 1360 . 0.2648 0.2639 . 149 . 1509 . . 'X-RAY DIFFRACTION' 3.1513 3.3485 16 90.0000 1336 . 0.2677 0.3145 . 157 . 1493 . . 'X-RAY DIFFRACTION' 3.3485 3.6066 16 90.0000 1320 . 0.2276 0.2634 . 140 . 1460 . . 'X-RAY DIFFRACTION' 3.6066 3.9687 16 91.0000 1389 . 0.2011 0.2475 . 150 . 1539 . . 'X-RAY DIFFRACTION' 3.9687 4.5410 16 89.0000 1300 . 0.1689 0.1854 . 156 . 1456 . . 'X-RAY DIFFRACTION' 4.5410 5.7136 16 89.0000 1318 . 0.1550 0.2049 . 145 . 1463 . . 'X-RAY DIFFRACTION' 5.7136 28.5991 16 89.0000 1326 . 0.1631 0.2019 . 140 . 1466 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3SD1 _struct.title 'The structure of a tetrahydrofolate riboswitch' _struct.pdbx_descriptor 89-MER _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SD1 _struct_keywords.text 'tetrahydrofolate rna riboswitch, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 86 N3 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 86 O4 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 84 N1 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 84 O6 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A G 37 O6 ? ? A G 6 A G 37 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? hydrog15 hydrog ? ? A A 8 N3 ? ? ? 1_555 A G 44 N2 ? ? A A 8 A G 44 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog16 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 77 O2 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog17 hydrog ? ? A G 9 O6 ? ? ? 1_555 A U 77 N3 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog18 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 76 N3 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 76 O4 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 73 N3 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 73 O4 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog35 hydrog ? ? A G 17 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog36 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 22 N1 ? ? A G 19 A A 22 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog40 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A U 20 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog44 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog45 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 55 N1 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog46 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 55 N6 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog47 hydrog ? ? A A 23 N1 ? ? ? 1_555 A G 67 N2 ? ? A A 23 A G 67 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog48 hydrog ? ? A G 24 O6 ? ? ? 1_555 A G 54 N1 ? ? A G 24 A G 54 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? hydrog49 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 52 N1 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog50 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 52 N6 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog51 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 53 O2 ? ? A G 26 A C 53 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog52 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? A U 29 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? A A 33 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? A A 33 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? A A 34 N1 ? ? ? 1_555 A G 44 N1 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog70 hydrog ? ? A A 34 N6 ? ? ? 1_555 A G 44 O6 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog71 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 42 O4 ? ? A U 35 A U 42 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? hydrog72 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog73 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog74 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog75 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog76 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog77 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog78 hydrog ? ? A A 39 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog79 hydrog ? ? A A 39 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog80 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 80 N1 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog81 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 80 N6 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog82 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog83 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog84 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog85 hydrog ? ? A A 56 N3 ? ? ? 1_555 A G 65 N2 ? ? A A 56 A G 65 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog86 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog87 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog88 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog89 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog90 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog91 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog92 hydrog ? ? A G 59 N2 ? ? ? 1_555 A A 62 N7 ? ? A G 59 A A 62 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE IRI A 90' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IRI A 91' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE IRI A 92' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IRI A 93' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE IRI A 94' AC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IRI A 95' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IRI A 96' AC8 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE FOZ A 97' AC9 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE FOZ A 98' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 U A 25 ? U A 25 . ? 1_555 ? 2 AC1 5 G A 26 ? G A 26 . ? 1_555 ? 3 AC1 5 A A 47 ? A A 47 . ? 1_555 ? 4 AC1 5 C A 48 ? C A 48 . ? 1_555 ? 5 AC1 5 HOH K . ? HOH A 125 . ? 1_555 ? 6 AC2 3 U A 29 ? U A 29 . ? 1_555 ? 7 AC2 3 G A 30 ? G A 30 . ? 1_555 ? 8 AC2 3 U A 31 ? U A 31 . ? 1_555 ? 9 AC3 4 U A 14 ? U A 14 . ? 1_555 ? 10 AC3 4 U A 15 ? U A 15 . ? 1_555 ? 11 AC3 4 U A 69 ? U A 69 . ? 1_555 ? 12 AC3 4 A A 71 ? A A 71 . ? 1_555 ? 13 AC4 2 G A 61 ? G A 61 . ? 1_555 ? 14 AC4 2 C A 88 ? C A 88 . ? 4_445 ? 15 AC5 5 U A 76 ? U A 76 . ? 1_555 ? 16 AC5 5 U A 77 ? U A 77 . ? 1_555 ? 17 AC5 5 G A 78 ? G A 78 . ? 1_555 ? 18 AC5 5 IRI G . ? IRI A 95 . ? 1_555 ? 19 AC5 5 HOH K . ? HOH A 121 . ? 1_555 ? 20 AC6 3 G A 9 ? G A 9 . ? 1_555 ? 21 AC6 3 IRI F . ? IRI A 94 . ? 1_555 ? 22 AC6 3 HOH K . ? HOH A 136 . ? 1_555 ? 23 AC7 2 U A 21 ? U A 21 . ? 4_555 ? 24 AC7 2 C A 88 ? C A 88 . ? 4_445 ? 25 AC8 5 U A 25 ? U A 25 . ? 1_555 ? 26 AC8 5 G A 26 ? G A 26 . ? 1_555 ? 27 AC8 5 C A 53 ? C A 53 . ? 1_555 ? 28 AC8 5 G A 54 ? G A 54 . ? 1_555 ? 29 AC8 5 G A 68 ? G A 68 . ? 1_555 ? 30 AC9 7 U A 7 ? U A 7 . ? 1_555 ? 31 AC9 7 A A 8 ? A A 8 . ? 1_555 ? 32 AC9 7 U A 35 ? U A 35 . ? 1_555 ? 33 AC9 7 U A 42 ? U A 42 . ? 1_555 ? 34 AC9 7 G A 44 ? G A 44 . ? 1_555 ? 35 AC9 7 C A 79 ? C A 79 . ? 1_555 ? 36 AC9 7 A A 80 ? A A 80 . ? 1_555 ? # _atom_sites.entry_id 3SD1 _atom_sites.fract_transf_matrix[1][1] 0.036206 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014665 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006347 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C IR N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 A 34 34 34 A A A . n A 1 35 U 35 35 35 U U A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n A 1 44 G 44 44 44 G G A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 A 47 47 47 A A A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 C 50 50 50 C C A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 C 53 53 53 C C A . n A 1 54 G 54 54 54 G G A . n A 1 55 A 55 55 55 A A A . n A 1 56 A 56 56 56 A A A . n A 1 57 G 57 57 57 G G A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 A 62 62 62 A A A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 C 66 66 66 C C A . n A 1 67 G 67 67 67 G G A . n A 1 68 G 68 68 68 G G A . n A 1 69 U 69 69 69 U U A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 A 72 72 72 A A A . n A 1 73 U 73 73 73 U U A . n A 1 74 C 74 74 74 C C A . n A 1 75 A 75 75 75 A A A . n A 1 76 U 76 76 76 U U A . n A 1 77 U 77 77 77 U U A . n A 1 78 G 78 78 78 G G A . n A 1 79 C 79 79 79 C C A . n A 1 80 A 80 80 80 A A A . n A 1 81 U 81 81 81 U U A . n A 1 82 C 82 82 82 C C A . n A 1 83 C 83 83 83 C C A . n A 1 84 G 84 84 84 G G A . n A 1 85 C 85 85 85 C C A . n A 1 86 U 86 86 86 U U A . n A 1 87 C 87 87 87 C C A . n A 1 88 C 88 88 88 C C A . n A 1 89 A 89 89 89 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IRI 1 90 1 IRI IRI A . C 2 IRI 1 91 2 IRI IRI A . D 2 IRI 1 92 3 IRI IRI A . E 2 IRI 1 93 4 IRI IRI A . F 2 IRI 1 94 5 IRI IRI A . G 2 IRI 1 95 6 IRI IRI A . H 2 IRI 1 96 7 IRI IRI A . I 3 FOZ 1 97 1 FOZ FOZ A . J 3 FOZ 1 98 2 FOZ FOZ A . K 4 HOH 1 99 1 HOH HOH A . K 4 HOH 2 100 2 HOH HOH A . K 4 HOH 3 101 3 HOH HOH A . K 4 HOH 4 102 4 HOH HOH A . K 4 HOH 5 103 5 HOH HOH A . K 4 HOH 6 104 6 HOH HOH A . K 4 HOH 7 105 7 HOH HOH A . K 4 HOH 8 106 8 HOH HOH A . K 4 HOH 9 107 9 HOH HOH A . K 4 HOH 10 108 10 HOH HOH A . K 4 HOH 11 109 11 HOH HOH A . K 4 HOH 12 110 12 HOH HOH A . K 4 HOH 13 111 13 HOH HOH A . K 4 HOH 14 112 14 HOH HOH A . K 4 HOH 15 113 15 HOH HOH A . K 4 HOH 16 114 16 HOH HOH A . K 4 HOH 17 115 17 HOH HOH A . K 4 HOH 18 116 18 HOH HOH A . K 4 HOH 19 117 19 HOH HOH A . K 4 HOH 20 118 20 HOH HOH A . K 4 HOH 21 119 21 HOH HOH A . K 4 HOH 22 120 22 HOH HOH A . K 4 HOH 23 121 23 HOH HOH A . K 4 HOH 24 122 24 HOH HOH A . K 4 HOH 25 123 25 HOH HOH A . K 4 HOH 26 124 26 HOH HOH A . K 4 HOH 27 125 27 HOH HOH A . K 4 HOH 28 126 28 HOH HOH A . K 4 HOH 29 127 29 HOH HOH A . K 4 HOH 30 128 30 HOH HOH A . K 4 HOH 31 129 31 HOH HOH A . K 4 HOH 32 130 32 HOH HOH A . K 4 HOH 33 131 33 HOH HOH A . K 4 HOH 34 132 34 HOH HOH A . K 4 HOH 35 133 35 HOH HOH A . K 4 HOH 36 134 36 HOH HOH A . K 4 HOH 37 135 37 HOH HOH A . K 4 HOH 38 136 38 HOH HOH A . K 4 HOH 39 137 39 HOH HOH A . K 4 HOH 40 138 40 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-21 2 'Structure model' 1 1 2011-09-28 3 'Structure model' 1 2 2011-11-02 4 'Structure model' 1 3 2014-03-19 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 4 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.273 _diffrn_reflns.pdbx_d_res_low 52.517 _diffrn_reflns.pdbx_number_obs 13840 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.050 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 8.80 _diffrn_reflns.pdbx_redundancy 4.10 _diffrn_reflns.pdbx_percent_possible_obs 96.40 _diffrn_reflns.number 57158 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 10.17 52.52 ? ? 0.031 0.031 ? 3.50 84.60 1 7.19 10.17 ? ? 0.031 0.031 ? 4.00 91.50 1 5.87 7.19 ? ? 0.032 0.032 ? 3.90 93.50 1 5.08 5.87 ? ? 0.035 0.035 ? 4.00 93.70 1 4.55 5.08 ? ? 0.036 0.036 ? 4.10 95.00 1 4.15 4.55 ? ? 0.038 0.038 ? 4.10 93.80 1 3.84 4.15 ? ? 0.040 0.040 ? 4.20 95.40 1 3.59 3.84 ? ? 0.045 0.045 ? 4.20 96.10 1 3.39 3.59 ? ? 0.050 0.050 ? 4.20 95.70 1 3.21 3.39 ? ? 0.054 0.054 ? 4.20 95.10 1 3.07 3.21 ? ? 0.056 0.056 ? 4.30 95.50 1 2.93 3.07 ? ? 0.082 0.082 ? 4.20 96.10 1 2.82 2.93 ? ? 0.105 0.105 ? 4.20 96.90 1 2.72 2.82 ? ? 0.141 0.141 ? 4.20 97.20 1 2.62 2.72 ? ? 0.178 0.178 ? 4.20 97.50 1 2.54 2.62 ? ? 0.223 0.223 ? 4.20 97.50 1 2.47 2.54 ? ? 0.327 0.327 ? 4.20 97.80 1 2.40 2.47 ? ? 0.406 0.406 ? 4.20 98.10 1 2.33 2.40 ? ? 0.560 0.560 ? 4.20 98.60 1 2.27 2.33 ? ? 0.790 0.790 ? 3.60 98.90 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom 8.04 10.95 120 0.516 69 0.137 197 0.367 6.65 8.04 158 0.544 70 0.118 242 0.395 5.80 6.65 195 0.558 70 0.128 289 0.415 5.21 5.80 214 0.545 75 0.088 323 0.392 4.77 5.21 241 0.510 71 0.126 352 0.386 4.42 4.77 263 0.482 79 0.092 380 0.366 4.15 4.42 287 0.570 74 0.123 403 0.439 3.91 4.15 308 0.531 76 0.124 423 0.420 3.72 3.91 345 0.501 79 0.094 465 0.402 3.55 3.72 350 0.436 73 0.086 465 0.354 3.40 3.55 366 0.458 82 0.071 495 0.363 3.26 3.40 400 0.460 79 0.072 522 0.375 3.15 3.26 403 0.454 76 0.086 530 0.370 3.04 3.15 419 0.420 75 0.077 543 0.351 2.95 3.04 449 0.404 83 0.085 582 0.342 2.86 2.95 475 0.395 76 0.110 603 0.339 2.78 2.86 458 0.394 72 0.111 581 0.339 2.71 2.78 501 0.403 94 0.119 650 0.346 2.64 2.71 516 0.366 77 0.147 646 0.325 2.58 2.64 530 0.378 82 0.147 662 0.336 2.52 2.58 525 0.353 79 0.144 657 0.315 2.46 2.52 579 0.328 87 0.164 713 0.299 2.41 2.46 600 0.288 89 0.153 732 0.268 2.36 2.41 589 0.285 83 0.173 715 0.268 2.32 2.36 583 0.276 76 0.166 709 0.260 2.27 2.32 634 0.262 98 0.168 782 0.246 # _pdbx_phasing_dm.entry_id 3SD1 _pdbx_phasing_dm.fom_acentric 0.630 _pdbx_phasing_dm.fom_centric 0.560 _pdbx_phasing_dm.fom 0.620 _pdbx_phasing_dm.reflns_acentric 11694 _pdbx_phasing_dm.reflns_centric 2109 _pdbx_phasing_dm.reflns 13803 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 4.100 6.500 ? ? 0.920 0.820 0.900 1457 380 1837 3.200 4.100 ? ? 0.870 0.740 0.850 1936 373 2309 2.800 3.200 ? ? 0.740 0.540 0.710 1982 318 2300 2.400 2.800 ? ? 0.490 0.310 0.470 3629 523 4152 2.300 2.400 ? ? 0.320 0.230 0.310 2282 296 2578 # _phasing.method SAD # _phasing_MAD.entry_id 3SD1 _phasing_MAD.pdbx_d_res_high 2.27 _phasing_MAD.pdbx_d_res_low 28.60 _phasing_MAD.pdbx_reflns_acentric 10574 _phasing_MAD.pdbx_fom_acentric 0.397 _phasing_MAD.pdbx_reflns_centric 2109 _phasing_MAD.pdbx_fom_centric 0.119 _phasing_MAD.pdbx_reflns 13795 _phasing_MAD.pdbx_fom 0.336 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.15 2009/03/31 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data reduction' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 RESOLVE 2.15 20-Mar-2010 program 'Thomas C. Terwilliger' terwilliger@lanl.gov 'density modification' http://www.solve.lanl.gov/ ? ? 4 PHENIX dev_572 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 BOS . ? ? ? ? 'data collection' ? ? ? 7 XSCALE . ? ? ? ? 'data reduction' ? ? ? 8 SCALA . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 0 A IRI 90 ? N2 ? B IRI ? N2 2 1 N 0 A IRI 90 ? N3 ? B IRI ? N3 3 1 N 0 A IRI 91 ? N2 ? C IRI ? N2 4 1 N 0 A IRI 91 ? N3 ? C IRI ? N3 5 1 N 0 A IRI 91 ? N5 ? C IRI ? N5 6 1 N 0 A IRI 92 ? N3 ? D IRI ? N3 7 1 N 0 A IRI 92 ? N6 ? D IRI ? N6 8 1 N 0 A IRI 93 ? N1 ? E IRI ? N1 9 1 N 0 A IRI 93 ? N2 ? E IRI ? N2 10 1 N 0 A IRI 93 ? N3 ? E IRI ? N3 11 1 N 0 A IRI 93 ? N4 ? E IRI ? N4 12 1 N 0 A IRI 93 ? N6 ? E IRI ? N6 13 1 N 0 A IRI 94 ? N2 ? F IRI ? N2 14 1 N 0 A IRI 94 ? N4 ? F IRI ? N4 15 1 N 0 A IRI 94 ? N5 ? F IRI ? N5 16 1 N 0 A IRI 95 ? N4 ? G IRI ? N4 17 1 N 0 A IRI 96 ? N2 ? H IRI ? N2 18 1 N 0 A IRI 96 ? N3 ? H IRI ? N3 19 1 N 0 A IRI 96 ? N5 ? H IRI ? N5 20 1 N 0 A IRI 96 ? N6 ? H IRI ? N6 21 1 N 1 A FOZ 97 ? O1 ? I FOZ 1 O1 22 1 N 1 A FOZ 97 ? O2 ? I FOZ 1 O2 23 1 N 1 A FOZ 97 ? CA ? I FOZ 1 CA 24 1 N 1 A FOZ 97 ? CB ? I FOZ 1 CB 25 1 N 1 A FOZ 97 ? CD ? I FOZ 1 CD 26 1 N 1 A FOZ 97 ? CG ? I FOZ 1 CG 27 1 N 1 A FOZ 97 ? CT ? I FOZ 1 CT 28 1 N 1 A FOZ 97 ? OE1 ? I FOZ 1 OE1 29 1 N 1 A FOZ 97 ? OE2 ? I FOZ 1 OE2 30 1 N 0 A FOZ 97 ? C ? I FOZ ? C 31 1 N 1 A FOZ 98 ? O1 ? J FOZ 1 O1 32 1 N 1 A FOZ 98 ? O2 ? J FOZ 1 O2 33 1 N 1 A FOZ 98 ? CA ? J FOZ 1 CA 34 1 N 1 A FOZ 98 ? CB ? J FOZ 1 CB 35 1 N 1 A FOZ 98 ? CD ? J FOZ 1 CD 36 1 N 1 A FOZ 98 ? CG ? J FOZ 1 CG 37 1 N 1 A FOZ 98 ? CT ? J FOZ 1 CT 38 1 N 1 A FOZ 98 ? OE1 ? J FOZ 1 OE1 39 1 N 1 A FOZ 98 ? OE2 ? J FOZ 1 OE2 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3SD1 'double helix' 3SD1 'a-form double helix' 3SD1 'bulge loop' 3SD1 'mismatched base pair' 3SD1 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 88 1_555 -0.963 -0.330 -0.244 -9.451 -5.935 -1.127 1 A_G1:C88_A A 1 ? A 88 ? 19 1 1 A G 2 1_555 A C 87 1_555 0.118 -0.013 -0.396 -13.267 -12.025 3.383 2 A_G2:C87_A A 2 ? A 87 ? 19 1 1 A A 3 1_555 A U 86 1_555 0.284 -0.027 -0.257 -11.234 -12.993 4.255 3 A_A3:U86_A A 3 ? A 86 ? 20 1 1 A G 4 1_555 A C 85 1_555 0.341 0.038 0.089 -14.285 -19.583 0.894 4 A_G4:C85_A A 4 ? A 85 ? 19 1 1 A A 5 1_555 A G 84 1_555 -0.433 1.572 -0.317 -20.128 -15.331 -17.351 5 A_A5:G84_A A 5 ? A 84 ? 8 1 1 A G 37 1_555 A C 83 1_555 -0.539 0.011 -0.463 -7.674 -4.396 3.340 6 A_G37:C83_A A 37 ? A 83 ? 19 1 1 A G 38 1_555 A C 82 1_555 -0.688 -0.079 -0.354 -15.925 -5.001 5.288 7 A_G38:C82_A A 38 ? A 82 ? 19 1 1 A A 39 1_555 A U 81 1_555 0.362 -0.199 0.555 -4.623 3.598 3.304 8 A_A39:U81_A A 39 ? A 81 ? 20 1 1 A U 40 1_555 A A 80 1_555 0.618 0.049 0.443 -19.935 -15.617 3.150 9 A_U40:A80_A A 40 ? A 80 ? 20 1 1 A G 41 1_555 A C 79 1_555 -0.122 0.282 -0.915 -44.363 -6.358 5.239 10 A_G41:C79_A A 41 ? A 79 ? 19 1 1 A U 42 1_555 A U 35 1_555 -4.160 -0.663 -1.123 13.932 -11.195 -91.879 11 A_U42:U35_A A 42 ? A 35 ? ? ? 1 A G 44 1_555 A A 34 1_555 -0.285 1.474 -0.256 8.583 -16.039 -16.343 12 A_G44:A34_A A 44 ? A 34 ? 8 1 1 A U 45 1_555 A A 33 1_555 0.537 0.094 -0.106 11.172 -16.707 0.895 13 A_U45:A33_A A 45 ? A 33 ? 20 1 1 A C 46 1_555 A G 32 1_555 0.293 -0.107 0.106 3.112 -12.536 0.172 14 A_C46:G32_A A 46 ? A 32 ? 19 1 1 A A 47 1_555 A U 31 1_555 0.050 -0.059 0.483 9.567 -8.956 0.737 15 A_A47:U31_A A 47 ? A 31 ? 20 1 1 A C 48 1_555 A G 30 1_555 -0.090 0.036 0.034 17.917 -15.397 4.417 16 A_C48:G30_A A 48 ? A 30 ? 19 1 1 A A 49 1_555 A U 29 1_555 0.061 -0.162 -0.497 3.891 -16.680 1.093 17 A_A49:U29_A A 49 ? A 29 ? 20 1 1 A C 50 1_555 A G 28 1_555 0.064 -0.180 -0.392 4.886 -15.137 4.280 18 A_C50:G28_A A 50 ? A 28 ? 19 1 1 A A 51 1_555 A U 27 1_555 0.246 -0.066 -0.177 -7.130 -20.434 2.765 19 A_A51:U27_A A 51 ? A 27 ? 20 1 1 A A 52 1_555 A G 26 1_555 0.012 1.411 -0.648 -13.111 -11.569 -13.948 20 A_A52:G26_A A 52 ? A 26 ? 8 1 1 A G 9 1_555 A U 77 1_555 -2.099 -0.300 -0.183 1.525 1.421 -0.112 21 A_G9:U77_A A 9 ? A 77 ? 28 1 1 A A 10 1_555 A U 76 1_555 -0.177 -0.058 -0.314 -0.360 -12.781 6.135 22 A_A10:U76_A A 10 ? A 76 ? 20 1 1 A U 11 1_555 A A 75 1_555 -0.053 -0.247 0.162 0.163 -13.671 2.638 23 A_U11:A75_A A 11 ? A 75 ? 20 1 1 A G 12 1_555 A C 74 1_555 -0.081 -0.198 0.130 -6.452 -10.860 3.049 24 A_G12:C74_A A 12 ? A 74 ? 19 1 1 A A 13 1_555 A U 73 1_555 -0.101 -0.084 0.331 0.223 -12.388 3.905 25 A_A13:U73_A A 13 ? A 73 ? 20 1 1 A U 14 1_555 A A 72 1_555 -0.160 -0.090 0.208 -11.730 -20.870 -0.897 26 A_U14:A72_A A 14 ? A 72 ? 20 1 1 A U 15 1_555 A A 71 1_555 -0.466 -0.073 0.203 -4.492 -13.828 0.480 27 A_U15:A71_A A 15 ? A 71 ? 20 1 1 A C 16 1_555 A G 70 1_555 1.057 -0.262 0.036 9.949 -11.028 -3.518 28 A_C16:G70_A A 16 ? A 70 ? 19 1 1 A G 17 1_555 A U 69 1_555 -2.170 -0.467 -0.020 0.443 -9.720 0.305 29 A_G17:U69_A A 17 ? A 69 ? 28 1 1 A C 18 1_555 A G 67 1_555 0.214 -0.065 -0.030 2.853 -10.568 3.170 30 A_C18:G67_A A 18 ? A 67 ? 19 1 1 A G 19 1_555 A C 66 1_555 -0.420 -0.085 -0.036 -8.579 -26.550 3.744 31 A_G19:C66_A A 19 ? A 66 ? 19 1 1 A U 20 1_555 A G 65 1_555 2.367 -0.473 0.070 -2.597 -16.661 -9.887 32 A_U20:G65_A A 20 ? A 65 ? 28 1 1 A G 57 1_555 A C 64 1_555 -0.025 0.061 -0.081 -10.731 -9.940 3.063 33 A_G57:C64_A A 57 ? A 64 ? 19 1 1 A C 58 1_555 A G 63 1_555 0.317 -0.246 -0.072 2.158 -7.535 -0.794 34 A_C58:G63_A A 58 ? A 63 ? 19 1 1 A G 59 1_555 A A 62 1_555 8.129 -5.207 0.422 11.150 -4.766 -52.157 35 A_G59:A62_A A 59 ? A 62 ? ? ? 1 A A 23 1_555 A A 55 1_555 -4.233 1.277 -0.184 -22.144 -0.280 -107.168 36 A_A23:A55_A A 23 ? A 55 ? 5 4 1 A G 24 1_555 A G 54 1_555 -3.579 1.427 0.168 14.012 -5.798 -59.699 37 A_G24:G54_A A 24 ? A 54 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 88 1_555 A G 2 1_555 A C 87 1_555 -0.317 -1.689 3.353 -0.072 5.474 39.141 -3.136 0.460 3.099 8.122 0.107 39.507 1 AA_G1G2:C87C88_AA A 1 ? A 88 ? A 2 ? A 87 ? 1 A G 2 1_555 A C 87 1_555 A A 3 1_555 A U 86 1_555 0.213 -1.449 3.159 0.019 5.667 32.697 -3.422 -0.371 2.874 9.973 -0.033 33.171 2 AA_G2A3:U86C87_AA A 2 ? A 87 ? A 3 ? A 86 ? 1 A A 3 1_555 A U 86 1_555 A G 4 1_555 A C 85 1_555 0.271 -1.923 3.344 1.995 5.493 32.247 -4.334 -0.146 2.996 9.790 -3.554 32.759 3 AA_A3G4:C85U86_AA A 3 ? A 86 ? A 4 ? A 85 ? 1 A G 4 1_555 A C 85 1_555 A A 5 1_555 A G 84 1_555 -0.967 -1.753 3.173 6.607 3.719 32.948 -3.566 2.641 2.725 6.451 -11.461 33.786 4 AA_G4A5:G84C85_AA A 4 ? A 85 ? A 5 ? A 84 ? 1 A A 5 1_555 A G 84 1_555 A G 37 1_555 A C 83 1_555 -1.704 -3.432 3.457 14.551 6.430 48.502 -4.411 2.925 2.439 7.594 -17.184 50.894 5 AA_A5G37:C83G84_AA A 5 ? A 84 ? A 37 ? A 83 ? 1 A G 37 1_555 A C 83 1_555 A G 38 1_555 A C 82 1_555 -0.591 -1.776 3.524 -3.054 8.114 33.558 -4.262 0.511 3.065 13.769 5.183 34.629 6 AA_G37G38:C82C83_AA A 37 ? A 83 ? A 38 ? A 82 ? 1 A G 38 1_555 A C 82 1_555 A A 39 1_555 A U 81 1_555 -0.623 -1.784 2.775 -7.907 8.231 31.997 -4.123 0.044 2.342 14.373 13.806 33.922 7 AA_G38A39:U81C82_AA A 38 ? A 82 ? A 39 ? A 81 ? 1 A A 39 1_555 A U 81 1_555 A U 40 1_555 A A 80 1_555 0.818 -1.869 3.596 5.009 17.535 34.404 -4.934 -0.625 2.484 27.393 -7.825 38.809 8 AA_A39U40:A80U81_AA A 39 ? A 81 ? A 40 ? A 80 ? 1 A U 40 1_555 A A 80 1_555 A G 41 1_555 A C 79 1_555 1.675 -0.953 3.699 22.344 10.598 40.488 -2.266 0.173 3.754 13.866 -29.235 47.171 9 AA_U40G41:C79A80_AA A 40 ? A 80 ? A 41 ? A 79 ? 1 A G 41 1_555 A C 79 1_555 A U 42 1_555 A U 35 1_555 -2.956 2.057 2.717 -16.950 15.824 41.441 1.126 2.145 4.072 20.546 22.008 47.237 10 AA_G41U42:U35C79_AA A 41 ? A 79 ? A 42 ? A 35 ? 1 A U 42 1_555 A U 35 1_555 A G 44 1_555 A A 34 1_555 1.925 -2.146 3.227 -7.901 -5.153 62.016 -1.836 -2.200 3.137 -4.970 7.621 62.659 11 AA_U42G44:A34U35_AA A 42 ? A 35 ? A 44 ? A 34 ? 1 A G 44 1_555 A A 34 1_555 A U 45 1_555 A A 33 1_555 0.872 -1.682 3.042 -2.229 5.407 37.529 -3.197 -1.593 2.728 8.342 3.439 37.966 12 AA_G44U45:A33A34_AA A 44 ? A 34 ? A 45 ? A 33 ? 1 A U 45 1_555 A A 33 1_555 A C 46 1_555 A G 32 1_555 0.249 -1.803 3.478 -2.085 3.266 32.910 -3.731 -0.800 3.267 5.740 3.664 33.132 13 AA_U45C46:G32A33_AA A 45 ? A 33 ? A 46 ? A 32 ? 1 A C 46 1_555 A G 32 1_555 A A 47 1_555 A U 31 1_555 -0.696 -1.788 2.994 -3.490 3.918 29.204 -4.230 0.703 2.798 7.693 6.852 29.662 14 AA_C46A47:U31G32_AA A 46 ? A 32 ? A 47 ? A 31 ? 1 A A 47 1_555 A U 31 1_555 A C 48 1_555 A G 30 1_555 0.397 -1.416 3.023 4.534 3.448 30.319 -3.273 0.056 2.876 6.520 -8.573 30.837 15 AA_A47C48:G30U31_AA A 47 ? A 31 ? A 48 ? A 30 ? 1 A C 48 1_555 A G 30 1_555 A A 49 1_555 A U 29 1_555 -0.653 -1.284 3.545 2.698 15.551 33.962 -4.055 1.375 2.669 25.016 -4.340 37.352 16 AA_C48A49:U29G30_AA A 48 ? A 30 ? A 49 ? A 29 ? 1 A A 49 1_555 A U 29 1_555 A C 50 1_555 A G 28 1_555 0.279 -1.152 3.271 -0.973 10.968 30.163 -3.942 -0.670 2.688 20.247 1.797 32.066 17 AA_A49C50:G28U29_AA A 49 ? A 29 ? A 50 ? A 28 ? 1 A C 50 1_555 A G 28 1_555 A A 51 1_555 A U 27 1_555 0.390 -1.462 3.623 1.314 12.427 34.742 -4.061 -0.431 2.957 20.027 -2.117 36.856 18 AA_C50A51:U27G28_AA A 50 ? A 28 ? A 51 ? A 27 ? 1 A A 51 1_555 A U 27 1_555 A A 52 1_555 A G 26 1_555 -0.846 -1.981 3.416 3.733 6.574 31.270 -4.718 2.176 2.835 11.978 -6.801 32.149 19 AA_A51A52:G26U27_AA A 51 ? A 27 ? A 52 ? A 26 ? 1 A G 9 1_555 A U 77 1_555 A A 10 1_555 A U 76 1_555 -0.313 -1.744 3.319 0.033 3.832 38.503 -3.098 0.477 3.137 5.794 -0.050 38.686 20 AA_G9A10:U76U77_AA A 9 ? A 77 ? A 10 ? A 76 ? 1 A A 10 1_555 A U 76 1_555 A U 11 1_555 A A 75 1_555 -0.408 -1.264 3.200 -2.796 7.992 32.203 -3.460 0.274 2.838 14.106 4.935 33.269 21 AA_A10U11:A75U76_AA A 10 ? A 76 ? A 11 ? A 75 ? 1 A U 11 1_555 A A 75 1_555 A G 12 1_555 A C 74 1_555 0.290 -1.309 3.186 0.454 12.849 33.787 -3.762 -0.410 2.540 21.179 -0.748 36.084 22 AA_U11G12:C74A75_AA A 11 ? A 75 ? A 12 ? A 74 ? 1 A G 12 1_555 A C 74 1_555 A A 13 1_555 A U 73 1_555 -0.360 -1.381 3.032 -2.028 4.133 32.632 -3.072 0.322 2.857 7.310 3.587 32.946 23 AA_G12A13:U73C74_AA A 12 ? A 74 ? A 13 ? A 73 ? 1 A A 13 1_555 A U 73 1_555 A U 14 1_555 A A 72 1_555 -0.383 -1.076 3.503 0.642 13.983 31.480 -4.017 0.749 2.782 24.323 -1.116 34.380 24 AA_A13U14:A72U73_AA A 13 ? A 73 ? A 14 ? A 72 ? 1 A U 14 1_555 A A 72 1_555 A U 15 1_555 A A 71 1_555 0.258 -1.253 3.042 -0.271 5.860 32.002 -3.155 -0.502 2.772 10.519 0.487 32.521 25 AA_U14U15:A71A72_AA A 14 ? A 72 ? A 15 ? A 71 ? 1 A U 15 1_555 A A 71 1_555 A C 16 1_555 A G 70 1_555 -0.210 -1.085 3.004 1.202 2.524 36.526 -2.041 0.483 2.917 4.020 -1.914 36.629 26 AA_U15C16:G70A71_AA A 15 ? A 71 ? A 16 ? A 70 ? 1 A C 16 1_555 A G 70 1_555 A G 17 1_555 A U 69 1_555 1.591 -2.260 3.313 0.541 9.511 19.834 -9.099 -3.993 2.063 25.776 -1.467 21.982 27 AA_C16G17:U69G70_AA A 16 ? A 70 ? A 17 ? A 69 ? 1 A G 17 1_555 A U 69 1_555 A C 18 1_555 A G 67 1_555 -0.018 -1.564 3.250 -2.282 -0.041 45.153 -2.030 -0.179 3.248 -0.054 2.970 45.207 28 AA_G17C18:G67U69_AA A 17 ? A 69 ? A 18 ? A 67 ? 1 A C 18 1_555 A G 67 1_555 A G 19 1_555 A C 66 1_555 -0.176 -1.552 3.287 -3.331 22.174 30.886 -4.839 -0.098 1.820 36.256 5.446 38.006 29 AA_C18G19:C66G67_AA A 18 ? A 67 ? A 19 ? A 66 ? 1 A G 19 1_555 A C 66 1_555 A U 20 1_555 A G 65 1_555 -0.575 -0.972 3.061 -0.149 2.138 46.483 -1.397 0.716 3.018 2.707 0.189 46.530 30 AA_G19U20:G65C66_AA A 19 ? A 66 ? A 20 ? A 65 ? 1 A U 20 1_555 A G 65 1_555 A G 57 1_555 A C 64 1_555 -1.807 -2.023 3.246 2.535 8.563 32.410 -4.756 3.500 2.501 14.990 -4.437 33.586 31 AA_U20G57:C64G65_AA A 20 ? A 65 ? A 57 ? A 64 ? 1 A G 57 1_555 A C 64 1_555 A C 58 1_555 A G 63 1_555 0.928 -2.236 3.038 2.511 0.178 27.296 -4.761 -1.376 3.094 0.377 -5.306 27.409 32 AA_G57C58:G63C64_AA A 57 ? A 64 ? A 58 ? A 63 ? 1 A C 58 1_555 A G 63 1_555 A G 59 1_555 A A 62 1_555 -4.866 -1.858 3.117 -1.122 5.248 56.804 -2.218 5.038 3.036 5.503 1.177 57.036 33 AA_C58G59:A62G63_AA A 58 ? A 63 ? A 59 ? A 62 ? 1 A A 23 1_555 A A 55 1_555 A G 24 1_555 A G 54 1_555 2.565 -2.015 2.803 -8.614 2.210 37.213 -3.287 -4.734 2.062 3.403 13.267 38.224 34 AA_A23G24:G54A55_AA A 23 ? A 55 ? A 24 ? A 54 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IRIDIUM HEXAMMINE ION' IRI 3 'N-[4-({[(6S)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid' FOZ 4 water HOH #