data_3SD3
#
_entry.id 3SD3
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3SD3 pdb_00003sd3 10.2210/pdb3sd3/pdb
NDB NA1169 ? ?
RCSB RCSB066056 ? ?
WWPDB D_1000066056 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-09-21
2 'Structure model' 1 1 2011-09-28
3 'Structure model' 1 2 2011-11-02
4 'Structure model' 2 0 2019-11-20
5 'Structure model' 2 1 2024-02-28
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' Advisory
4 4 'Structure model' 'Atomic model'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Derived calculations'
7 4 'Structure model' 'Non-polymer description'
8 4 'Structure model' 'Structure summary'
9 5 'Structure model' Advisory
10 5 'Structure model' 'Data collection'
11 5 'Structure model' 'Database references'
12 5 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' atom_site
2 4 'Structure model' chem_comp
3 4 'Structure model' entity
4 4 'Structure model' pdbx_entity_nonpoly
5 4 'Structure model' pdbx_nonpoly_scheme
6 4 'Structure model' pdbx_unobs_or_zero_occ_atoms
7 5 'Structure model' chem_comp_atom
8 5 'Structure model' chem_comp_bond
9 5 'Structure model' database_2
10 5 'Structure model' pdbx_unobs_or_zero_occ_atoms
11 5 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_atom_site.B_iso_or_equiv'
2 4 'Structure model' '_atom_site.Cartn_x'
3 4 'Structure model' '_atom_site.Cartn_y'
4 4 'Structure model' '_atom_site.Cartn_z'
5 4 'Structure model' '_atom_site.auth_atom_id'
6 4 'Structure model' '_atom_site.auth_comp_id'
7 4 'Structure model' '_atom_site.label_atom_id'
8 4 'Structure model' '_atom_site.label_comp_id'
9 4 'Structure model' '_atom_site.type_symbol'
10 4 'Structure model' '_chem_comp.id'
11 4 'Structure model' '_chem_comp.name'
12 4 'Structure model' '_chem_comp.pdbx_synonyms'
13 4 'Structure model' '_entity.pdbx_description'
14 4 'Structure model' '_pdbx_entity_nonpoly.comp_id'
15 4 'Structure model' '_pdbx_entity_nonpoly.name'
16 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id'
17 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id'
18 5 'Structure model' '_database_2.pdbx_DOI'
19 5 'Structure model' '_database_2.pdbx_database_accession'
20 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
21 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
22 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.entry_id 3SD3
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2011-06-08
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 3SD1
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Reyes, F.E.' 1
'Trausch, J.J.' 2
'Ceres, P.' 3
'Batey, R.T.' 4
#
_citation.id primary
_citation.title
'The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.'
_citation.journal_abbrev Structure
_citation.journal_volume 19
_citation.page_first 1413
_citation.page_last 1423
_citation.year 2011
_citation.journal_id_ASTM STRUE6
_citation.country UK
_citation.journal_id_ISSN 0969-2126
_citation.journal_id_CSD 2005
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 21906956
_citation.pdbx_database_id_DOI 10.1016/j.str.2011.06.019
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Trausch, J.J.' 1 ?
primary 'Ceres, P.' 2 ?
primary 'Reyes, F.E.' 3 ?
primary 'Batey, R.T.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Tetrahydrofolate riboswitch'
28848.162 1 ? ? ? ?
2 non-polymer syn 'IRIDIUM HEXAMMINE ION'
294.400 5 ? ? ? ?
3 non-polymer syn 'N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid'
473.439 1 ? ? ? ?
4 water nat water
18.015 103 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;GGAGAGUAGAUGAUUCGCGUUAAGCGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA
UCCGCUCCA
;
_entity_poly.pdbx_seq_one_letter_code_can
;GGAGAGUAGAUGAUUCGCGUUAAGCGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA
UCCGCUCCA
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'IRIDIUM HEXAMMINE ION' IRI
3 'N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid' FFO
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 G n
1 2 G n
1 3 A n
1 4 G n
1 5 A n
1 6 G n
1 7 U n
1 8 A n
1 9 G n
1 10 A n
1 11 U n
1 12 G n
1 13 A n
1 14 U n
1 15 U n
1 16 C n
1 17 G n
1 18 C n
1 19 G n
1 20 U n
1 21 U n
1 22 A n
1 23 A n
1 24 G n
1 25 C n
1 26 G n
1 27 U n
1 28 G n
1 29 U n
1 30 G n
1 31 U n
1 32 G n
1 33 A n
1 34 A n
1 35 U n
1 36 G n
1 37 G n
1 38 G n
1 39 A n
1 40 U n
1 41 G n
1 42 U n
1 43 C n
1 44 G n
1 45 U n
1 46 C n
1 47 A n
1 48 C n
1 49 A n
1 50 C n
1 51 A n
1 52 A n
1 53 C n
1 54 G n
1 55 A n
1 56 A n
1 57 G n
1 58 C n
1 59 G n
1 60 A n
1 61 G n
1 62 A n
1 63 G n
1 64 C n
1 65 G n
1 66 C n
1 67 G n
1 68 G n
1 69 U n
1 70 G n
1 71 A n
1 72 A n
1 73 U n
1 74 C n
1 75 A n
1 76 U n
1 77 U n
1 78 G n
1 79 C n
1 80 A n
1 81 U n
1 82 C n
1 83 C n
1 84 G n
1 85 C n
1 86 U n
1 87 C n
1 88 C n
1 89 A n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Synthesized from T7 RNA polymerase using a recombinant PCR template'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"
? 'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"
? 'C9 H14 N3 O8 P' 323.197
FFO non-polymer . 'N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid'
'[6S]-5-FORMYL-TETRAHYDROFOLATE; 6S-FOLINIC ACID' 'C20 H23 N7 O7' 473.439
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"
? 'C10 H14 N5 O8 P' 363.221
HOH non-polymer . WATER
? 'H2 O' 18.015
IRI non-polymer . 'IRIDIUM HEXAMMINE ION'
? 'H18 Ir N6 3' 294.400
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"
? 'C9 H13 N2 O9 P' 324.181
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 G 1 1 1 G G A . n
A 1 2 G 2 2 2 G G A . n
A 1 3 A 3 3 3 A A A . n
A 1 4 G 4 4 4 G G A . n
A 1 5 A 5 5 5 A A A . n
A 1 6 G 6 6 6 G G A . n
A 1 7 U 7 7 7 U U A . n
A 1 8 A 8 8 8 A A A . n
A 1 9 G 9 9 9 G G A . n
A 1 10 A 10 10 10 A A A . n
A 1 11 U 11 11 11 U U A . n
A 1 12 G 12 12 12 G G A . n
A 1 13 A 13 13 13 A A A . n
A 1 14 U 14 14 14 U U A . n
A 1 15 U 15 15 15 U U A . n
A 1 16 C 16 16 16 C C A . n
A 1 17 G 17 17 17 G G A . n
A 1 18 C 18 18 18 C C A . n
A 1 19 G 19 19 19 G G A . n
A 1 20 U 20 20 20 U U A . n
A 1 21 U 21 21 21 U U A . n
A 1 22 A 22 22 22 A A A . n
A 1 23 A 23 23 23 A A A . n
A 1 24 G 24 24 24 G G A . n
A 1 25 C 25 25 25 C C A . n
A 1 26 G 26 26 26 G G A . n
A 1 27 U 27 27 27 U U A . n
A 1 28 G 28 28 28 G G A . n
A 1 29 U 29 29 29 U U A . n
A 1 30 G 30 30 30 G G A . n
A 1 31 U 31 31 31 U U A . n
A 1 32 G 32 32 32 G G A . n
A 1 33 A 33 33 33 A A A . n
A 1 34 A 34 34 34 A A A . n
A 1 35 U 35 35 35 U U A . n
A 1 36 G 36 36 36 G G A . n
A 1 37 G 37 37 37 G G A . n
A 1 38 G 38 38 38 G G A . n
A 1 39 A 39 39 39 A A A . n
A 1 40 U 40 40 40 U U A . n
A 1 41 G 41 41 41 G G A . n
A 1 42 U 42 42 42 U U A . n
A 1 43 C 43 43 43 C C A . n
A 1 44 G 44 44 44 G G A . n
A 1 45 U 45 45 45 U U A . n
A 1 46 C 46 46 46 C C A . n
A 1 47 A 47 47 47 A A A . n
A 1 48 C 48 48 48 C C A . n
A 1 49 A 49 49 49 A A A . n
A 1 50 C 50 50 50 C C A . n
A 1 51 A 51 51 51 A A A . n
A 1 52 A 52 52 52 A A A . n
A 1 53 C 53 53 53 C C A . n
A 1 54 G 54 54 54 G G A . n
A 1 55 A 55 55 55 A A A . n
A 1 56 A 56 56 56 A A A . n
A 1 57 G 57 57 57 G G A . n
A 1 58 C 58 58 58 C C A . n
A 1 59 G 59 59 59 G G A . n
A 1 60 A 60 60 60 A A A . n
A 1 61 G 61 61 61 G G A . n
A 1 62 A 62 62 62 A A A . n
A 1 63 G 63 63 63 G G A . n
A 1 64 C 64 64 64 C C A . n
A 1 65 G 65 65 65 G G A . n
A 1 66 C 66 66 66 C C A . n
A 1 67 G 67 67 67 G G A . n
A 1 68 G 68 68 68 G G A . n
A 1 69 U 69 69 69 U U A . n
A 1 70 G 70 70 70 G G A . n
A 1 71 A 71 71 71 A A A . n
A 1 72 A 72 72 72 A A A . n
A 1 73 U 73 73 73 U U A . n
A 1 74 C 74 74 74 C C A . n
A 1 75 A 75 75 75 A A A . n
A 1 76 U 76 76 76 U U A . n
A 1 77 U 77 77 77 U U A . n
A 1 78 G 78 78 78 G G A . n
A 1 79 C 79 79 79 C C A . n
A 1 80 A 80 80 80 A A A . n
A 1 81 U 81 81 81 U U A . n
A 1 82 C 82 82 82 C C A . n
A 1 83 C 83 83 83 C C A . n
A 1 84 G 84 84 84 G G A . n
A 1 85 C 85 85 85 C C A . n
A 1 86 U 86 86 86 U U A . n
A 1 87 C 87 87 87 C C A . n
A 1 88 C 88 88 88 C C A . n
A 1 89 A 89 89 89 A A A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IRI 1 90 1 IRI IRI A .
C 2 IRI 1 91 2 IRI IRI A .
D 2 IRI 1 92 3 IRI IRI A .
E 2 IRI 1 93 4 IRI IRI A .
F 2 IRI 1 94 5 IRI IRI A .
G 3 FFO 1 3631 3631 FFO FOZ A .
H 4 HOH 1 95 95 HOH HOH A .
H 4 HOH 2 96 96 HOH HOH A .
H 4 HOH 3 97 97 HOH HOH A .
H 4 HOH 4 98 98 HOH HOH A .
H 4 HOH 5 99 99 HOH HOH A .
H 4 HOH 6 100 100 HOH HOH A .
H 4 HOH 7 101 101 HOH HOH A .
H 4 HOH 8 102 102 HOH HOH A .
H 4 HOH 9 103 103 HOH HOH A .
H 4 HOH 10 104 1 HOH HOH A .
H 4 HOH 11 105 2 HOH HOH A .
H 4 HOH 12 106 3 HOH HOH A .
H 4 HOH 13 107 4 HOH HOH A .
H 4 HOH 14 108 5 HOH HOH A .
H 4 HOH 15 109 6 HOH HOH A .
H 4 HOH 16 110 7 HOH HOH A .
H 4 HOH 17 111 8 HOH HOH A .
H 4 HOH 18 112 9 HOH HOH A .
H 4 HOH 19 113 10 HOH HOH A .
H 4 HOH 20 114 11 HOH HOH A .
H 4 HOH 21 115 12 HOH HOH A .
H 4 HOH 22 116 13 HOH HOH A .
H 4 HOH 23 117 14 HOH HOH A .
H 4 HOH 24 118 15 HOH HOH A .
H 4 HOH 25 119 16 HOH HOH A .
H 4 HOH 26 120 17 HOH HOH A .
H 4 HOH 27 121 18 HOH HOH A .
H 4 HOH 28 122 19 HOH HOH A .
H 4 HOH 29 123 20 HOH HOH A .
H 4 HOH 30 124 21 HOH HOH A .
H 4 HOH 31 125 22 HOH HOH A .
H 4 HOH 32 126 23 HOH HOH A .
H 4 HOH 33 127 24 HOH HOH A .
H 4 HOH 34 128 25 HOH HOH A .
H 4 HOH 35 129 26 HOH HOH A .
H 4 HOH 36 130 27 HOH HOH A .
H 4 HOH 37 131 28 HOH HOH A .
H 4 HOH 38 132 29 HOH HOH A .
H 4 HOH 39 133 30 HOH HOH A .
H 4 HOH 40 134 31 HOH HOH A .
H 4 HOH 41 135 32 HOH HOH A .
H 4 HOH 42 136 33 HOH HOH A .
H 4 HOH 43 137 34 HOH HOH A .
H 4 HOH 44 138 35 HOH HOH A .
H 4 HOH 45 139 36 HOH HOH A .
H 4 HOH 46 140 37 HOH HOH A .
H 4 HOH 47 141 38 HOH HOH A .
H 4 HOH 48 142 39 HOH HOH A .
H 4 HOH 49 143 40 HOH HOH A .
H 4 HOH 50 144 41 HOH HOH A .
H 4 HOH 51 145 42 HOH HOH A .
H 4 HOH 52 146 43 HOH HOH A .
H 4 HOH 53 147 44 HOH HOH A .
H 4 HOH 54 148 45 HOH HOH A .
H 4 HOH 55 149 46 HOH HOH A .
H 4 HOH 56 150 47 HOH HOH A .
H 4 HOH 57 151 48 HOH HOH A .
H 4 HOH 58 152 49 HOH HOH A .
H 4 HOH 59 153 50 HOH HOH A .
H 4 HOH 60 154 51 HOH HOH A .
H 4 HOH 61 155 52 HOH HOH A .
H 4 HOH 62 156 53 HOH HOH A .
H 4 HOH 63 157 54 HOH HOH A .
H 4 HOH 64 158 55 HOH HOH A .
H 4 HOH 65 159 56 HOH HOH A .
H 4 HOH 66 160 57 HOH HOH A .
H 4 HOH 67 161 58 HOH HOH A .
H 4 HOH 68 162 59 HOH HOH A .
H 4 HOH 69 163 60 HOH HOH A .
H 4 HOH 70 164 61 HOH HOH A .
H 4 HOH 71 165 62 HOH HOH A .
H 4 HOH 72 166 63 HOH HOH A .
H 4 HOH 73 167 64 HOH HOH A .
H 4 HOH 74 168 65 HOH HOH A .
H 4 HOH 75 169 66 HOH HOH A .
H 4 HOH 76 170 67 HOH HOH A .
H 4 HOH 77 171 68 HOH HOH A .
H 4 HOH 78 172 69 HOH HOH A .
H 4 HOH 79 173 70 HOH HOH A .
H 4 HOH 80 174 71 HOH HOH A .
H 4 HOH 81 175 72 HOH HOH A .
H 4 HOH 82 176 73 HOH HOH A .
H 4 HOH 83 177 74 HOH HOH A .
H 4 HOH 84 178 75 HOH HOH A .
H 4 HOH 85 179 76 HOH HOH A .
H 4 HOH 86 180 77 HOH HOH A .
H 4 HOH 87 181 78 HOH HOH A .
H 4 HOH 88 182 79 HOH HOH A .
H 4 HOH 89 183 80 HOH HOH A .
H 4 HOH 90 184 81 HOH HOH A .
H 4 HOH 91 185 82 HOH HOH A .
H 4 HOH 92 186 83 HOH HOH A .
H 4 HOH 93 187 84 HOH HOH A .
H 4 HOH 94 188 85 HOH HOH A .
H 4 HOH 95 189 86 HOH HOH A .
H 4 HOH 96 190 87 HOH HOH A .
H 4 HOH 97 191 88 HOH HOH A .
H 4 HOH 98 192 89 HOH HOH A .
H 4 HOH 99 193 90 HOH HOH A .
H 4 HOH 100 194 91 HOH HOH A .
H 4 HOH 101 195 92 HOH HOH A .
H 4 HOH 102 196 93 HOH HOH A .
H 4 HOH 103 197 94 HOH HOH A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 N 0 A IRI 90 ? N1 ? B IRI ? N1
2 1 N 0 A IRI 90 ? N2 ? B IRI ? N2
3 1 N 0 A IRI 90 ? N5 ? B IRI ? N5
4 1 N 0 A IRI 93 ? N1 ? E IRI ? N1
5 1 N 0 A IRI 93 ? N4 ? E IRI ? N4
6 1 N 0 A IRI 94 ? N4 ? F IRI ? N4
7 1 N 1 A FFO 3631 ? C ? G FFO 1 C
8 1 N 1 A FFO 3631 ? O ? G FFO 1 O
9 1 N 1 A FFO 3631 ? N ? G FFO 1 N
10 1 N 1 A FFO 3631 ? CA ? G FFO 1 CA
11 1 N 1 A FFO 3631 ? CB ? G FFO 1 CB
12 1 N 1 A FFO 3631 ? CG ? G FFO 1 CG
13 1 N 1 A FFO 3631 ? CD ? G FFO 1 CD
14 1 N 1 A FFO 3631 ? OE1 ? G FFO 1 OE1
15 1 N 1 A FFO 3631 ? OE2 ? G FFO 1 OE2
16 1 N 1 A FFO 3631 ? CT ? G FFO 1 CT
17 1 N 1 A FFO 3631 ? O1 ? G FFO 1 O1
18 1 N 1 A FFO 3631 ? O2 ? G FFO 1 O2
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 SCALA 3.3.15 2009/03/31 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling'
http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ?
2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ?
3 RESOLVE 2.15 20-Mar-2010 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing
http://www.solve.lanl.gov/ ? ?
4 PHENIX dev_572 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement
http://www.phenix-online.org/ C++ ?
5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
6 BOS . ? ? ? ? 'data collection' ? ? ?
7 XSCALE . ? ? ? ? 'data scaling' ? ? ?
#
_cell.length_a 27.520
_cell.length_b 68.590
_cell.length_c 158.080
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 3SD3
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.entry_id 3SD3
_symmetry.Int_Tables_number 19
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 3SD3
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_percent_sol 52.43
_exptl_crystal.density_Matthews 2.59
_exptl_crystal.density_meas ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.temp 303
_exptl_crystal_grow.pdbx_details
;2,4-methyl-pentanediol, spermine, sodium cacodylate, sodium chloride, dithiothreitol, pH 7.0, vapor diffusion, hanging drop, temperature 303K
;
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315r'
_diffrn_detector.pdbx_collection_date 2010-12-04
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.1051
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ALS BEAMLINE 5.0.2'
_diffrn_source.pdbx_wavelength_list 1.1051
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site ALS
_diffrn_source.pdbx_synchrotron_beamline 5.0.2
#
_reflns.entry_id 3SD3
_reflns.d_resolution_high 1.95
_reflns.d_resolution_low 62.922
_reflns.number_all 22136
_reflns.number_obs 22136
_reflns.pdbx_netI_over_sigmaI 20.200
_reflns.pdbx_Rsym_value 0.027
_reflns.pdbx_redundancy 3.500
_reflns.percent_possible_obs 98.100
_reflns.observed_criterion_sigma_F 2
_reflns.observed_criterion_sigma_I 2
_reflns.pdbx_Rmerge_I_obs ?
_reflns.B_iso_Wilson_estimate ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.950 2.010 ? 5747 ? 0.456 1.700 0.456 ? 3.700 ? 1572 98.000 1 1
2.010 2.060 ? 5641 ? 0.341 2.300 0.341 ? 3.600 ? 1569 99.200 2 1
2.060 2.120 ? 5362 ? 0.269 2.900 0.269 ? 3.600 ? 1492 94.600 3 1
2.120 2.190 ? 5329 ? 0.228 3.400 0.228 ? 3.600 ? 1474 99.700 4 1
2.190 2.260 ? 5137 ? 0.171 4.600 0.171 ? 3.500 ? 1458 98.700 5 1
2.260 2.340 ? 4878 ? 0.136 5.700 0.136 ? 3.600 ? 1354 97.000 6 1
2.340 2.420 ? 4900 ? 0.101 7.700 0.101 ? 3.600 ? 1372 99.500 7 1
2.420 2.520 ? 4661 ? 0.081 9.600 0.081 ? 3.500 ? 1313 97.600 8 1
2.520 2.640 ? 4457 ? 0.058 13.200 0.058 ? 3.500 ? 1258 99.900 9 1
2.640 2.760 ? 4270 ? 0.047 15.800 0.047 ? 3.500 ? 1226 98.300 10 1
2.760 2.910 ? 3977 ? 0.033 21.200 0.033 ? 3.500 ? 1128 99.200 11 1
2.910 3.090 ? 3824 ? 0.026 19.900 0.026 ? 3.500 ? 1106 98.000 12 1
3.090 3.300 ? 3441 ? 0.021 27.900 0.021 ? 3.500 ? 989 97.300 13 1
3.300 3.570 ? 3136 ? 0.020 28.200 0.020 ? 3.300 ? 960 97.500 14 1
3.570 3.910 ? 2872 ? 0.019 25.800 0.019 ? 3.200 ? 910 97.900 15 1
3.910 4.370 ? 2673 ? 0.019 30.900 0.019 ? 3.300 ? 803 98.700 16 1
4.370 5.050 ? 2303 ? 0.020 29.900 0.020 ? 3.200 ? 723 99.300 17 1
5.050 6.180 ? 2130 ? 0.017 35.300 0.017 ? 3.300 ? 650 99.100 18 1
6.180 8.740 ? 1663 ? 0.014 42.900 0.014 ? 3.300 ? 511 99.400 19 1
8.740 62.895 ? 767 ? 0.015 39.500 0.015 ? 2.900 ? 268 86.900 20 1
#
_refine.entry_id 3SD3
_refine.ls_d_res_high 1.95
_refine.ls_d_res_low 62.895
_refine.pdbx_ls_sigma_F 0.230
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 96.1600
_refine.ls_number_reflns_obs 22038
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_cross_valid_method ?
_refine.pdbx_R_Free_selection_details 'From phenix.refine'
_refine.details ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2307
_refine.ls_R_factor_R_work 0.2294
_refine.ls_wR_factor_R_work ?
_refine.ls_R_factor_R_free 0.2431
_refine.ls_wR_factor_R_free ?
_refine.ls_percent_reflns_R_free 8.9000
_refine.ls_number_reflns_R_free 1962
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 40.1859
_refine.solvent_model_param_bsol 25.2580
_refine.solvent_model_param_ksol 0.3640
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] 17.9289
_refine.aniso_B[2][2] -6.9843
_refine.aniso_B[3][3] 10.3856
_refine.aniso_B[1][2] -0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] -0.0000
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.3200
_refine.overall_SU_B ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.pdbx_solvent_vdw_probe_radii 1.0000
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.7200
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct SAD
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set 0.7699
_refine.B_iso_max 324.690
_refine.B_iso_min 16.870
_refine.occupancy_max 1.000
_refine.occupancy_min 0.000
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 1913
_refine_hist.pdbx_number_atoms_ligand 57
_refine_hist.number_atoms_solvent 103
_refine_hist.number_atoms_total 2073
_refine_hist.d_res_high 1.95
_refine_hist.d_res_low 62.895
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
f_bond_d 2196 0.002 ? ? ? 'X-RAY DIFFRACTION'
f_angle_d 3448 0.502 ? ? ? 'X-RAY DIFFRACTION'
f_chiral_restr 446 0.052 ? ? ? 'X-RAY DIFFRACTION'
f_plane_restr 92 0.004 ? ? ? 'X-RAY DIFFRACTION'
f_dihedral_angle_d 1076 16.272 ? ? ? 'X-RAY DIFFRACTION'
#
loop_
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.pdbx_refine_id
1.95 1.9947 14 90.0000 1294 . 0.3460 0.3751 . 129 . 1423 . . 'X-RAY DIFFRACTION'
1.9947 2.0486 14 94.0000 1368 . 0.3231 0.3351 . 136 . 1504 . . 'X-RAY DIFFRACTION'
2.0486 2.1089 14 91.0000 1354 . 0.3155 0.3266 . 129 . 1483 . . 'X-RAY DIFFRACTION'
2.1089 2.1770 14 96.0000 1377 . 0.3108 0.3372 . 136 . 1513 . . 'X-RAY DIFFRACTION'
2.1770 2.2548 14 97.0000 1438 . 0.3083 0.3194 . 140 . 1578 . . 'X-RAY DIFFRACTION'
2.2548 2.3451 14 95.0000 1378 . 0.3031 0.3919 . 133 . 1511 . . 'X-RAY DIFFRACTION'
2.3451 2.4518 14 98.0000 1466 . 0.2838 0.2365 . 143 . 1609 . . 'X-RAY DIFFRACTION'
2.4518 2.5811 14 97.0000 1413 . 0.2806 0.3270 . 137 . 1550 . . 'X-RAY DIFFRACTION'
2.5811 2.7428 14 99.0000 1498 . 0.2952 0.3083 . 148 . 1646 . . 'X-RAY DIFFRACTION'
2.7428 2.9545 14 98.0000 1442 . 0.2772 0.3052 . 141 . 1583 . . 'X-RAY DIFFRACTION'
2.9545 3.2519 14 98.0000 1466 . 0.2300 0.2263 . 143 . 1609 . . 'X-RAY DIFFRACTION'
3.2519 3.7224 14 98.0000 1476 . 0.2138 0.2445 . 144 . 1620 . . 'X-RAY DIFFRACTION'
3.7224 4.6896 14 98.0000 1526 . 0.1734 0.1774 . 150 . 1676 . . 'X-RAY DIFFRACTION'
4.6896 62.9551 14 96.0000 1580 . 0.1815 0.1872 . 153 . 1733 . . 'X-RAY DIFFRACTION'
#
_struct.entry_id 3SD3
_struct.title 'The structure of the tetrahydrofolate riboswitch containing a U25C mutation'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3SD3
_struct_keywords.text 'tetrahydrofolate rna riboswitch, RNA'
_struct_keywords.pdbx_keywords RNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 2 ?
E N N 2 ?
F N N 2 ?
G N N 3 ?
H N N 4 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3SD3
_struct_ref.pdbx_db_accession 3SD3
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3SD3
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 89
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 3SD3
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 89
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 89
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 86 N3 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 86 O4 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 84 N1 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 84 O6 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A G 37 O6 ? ? A G 6 A G 37 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ?
hydrog15 hydrog ? ? A A 8 N3 ? ? ? 1_555 A G 44 N2 ? ? A A 8 A G 44 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ?
hydrog16 hydrog ? ? A A 8 N7 ? ? ? 1_555 A G 78 N2 ? ? A A 8 A G 78 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ?
hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 77 O2 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog18 hydrog ? ? A G 9 O6 ? ? ? 1_555 A U 77 N3 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 76 N3 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 76 O4 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 73 N3 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 73 O4 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog33 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog34 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog36 hydrog ? ? A G 17 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog37 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog38 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog39 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 22 N1 ? ? A G 19 A A 22 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ?
hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog42 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog43 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog44 hydrog ? ? A U 20 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog45 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog46 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 55 N1 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ?
hydrog47 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 55 N6 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ?
hydrog48 hydrog ? ? A A 23 N1 ? ? ? 1_555 A G 67 N2 ? ? A A 23 A G 67 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ?
hydrog49 hydrog ? ? A G 24 O6 ? ? ? 1_555 A G 54 N2 ? ? A G 24 A G 54 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ?
hydrog50 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 52 N1 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog51 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 52 N6 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog52 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog53 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog54 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog55 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog56 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog57 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog58 hydrog ? ? A U 29 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog59 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog60 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog61 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog62 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog63 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog64 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog65 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog66 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog67 hydrog ? ? A A 33 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog68 hydrog ? ? A A 33 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog69 hydrog ? ? A A 34 N1 ? ? ? 1_555 A G 44 N1 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog70 hydrog ? ? A A 34 N6 ? ? ? 1_555 A G 44 O6 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog71 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 42 O4 ? ? A U 35 A U 42 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ?
hydrog72 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 83 O2 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ?
hydrog73 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog74 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog75 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog76 hydrog ? ? A A 39 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog77 hydrog ? ? A A 39 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog78 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 80 N1 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog79 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 80 N6 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog80 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog81 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog82 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog83 hydrog ? ? A A 56 N3 ? ? ? 1_555 A G 65 N2 ? ? A A 56 A G 65 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ?
hydrog84 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog85 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog86 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog87 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog88 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog89 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog90 hydrog ? ? A G 59 N2 ? ? ? 1_555 A A 62 N7 ? ? A G 59 A A 62 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A IRI 90 ? 2 'BINDING SITE FOR RESIDUE IRI A 90'
AC2 Software A IRI 91 ? 5 'BINDING SITE FOR RESIDUE IRI A 91'
AC3 Software A IRI 92 ? 8 'BINDING SITE FOR RESIDUE IRI A 92'
AC4 Software A IRI 93 ? 5 'BINDING SITE FOR RESIDUE IRI A 93'
AC5 Software A IRI 94 ? 4 'BINDING SITE FOR RESIDUE IRI A 94'
AC6 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE FOZ A 3631'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 2 G A 61 ? G A 61 . ? 1_555 ?
2 AC1 2 A A 62 ? A A 62 . ? 1_555 ?
3 AC2 5 G A 9 ? G A 9 . ? 1_555 ?
4 AC2 5 A A 72 ? A A 72 . ? 1_555 ?
5 AC2 5 HOH H . ? HOH A 101 . ? 1_555 ?
6 AC2 5 HOH H . ? HOH A 120 . ? 1_555 ?
7 AC2 5 HOH H . ? HOH A 134 . ? 1_555 ?
8 AC3 8 U A 7 ? U A 7 . ? 1_555 ?
9 AC3 8 G A 9 ? G A 9 . ? 1_555 ?
10 AC3 8 U A 77 ? U A 77 . ? 1_555 ?
11 AC3 8 G A 78 ? G A 78 . ? 1_555 ?
12 AC3 8 HOH H . ? HOH A 104 . ? 1_555 ?
13 AC3 8 HOH H . ? HOH A 120 . ? 1_555 ?
14 AC3 8 HOH H . ? HOH A 125 . ? 1_555 ?
15 AC3 8 HOH H . ? HOH A 166 . ? 1_555 ?
16 AC4 5 G A 32 ? G A 32 . ? 1_555 ?
17 AC4 5 A A 33 ? A A 33 . ? 1_555 ?
18 AC4 5 U A 42 ? U A 42 . ? 1_555 ?
19 AC4 5 HOH H . ? HOH A 123 . ? 1_555 ?
20 AC4 5 HOH H . ? HOH A 131 . ? 1_555 ?
21 AC5 4 U A 29 ? U A 29 . ? 1_555 ?
22 AC5 4 G A 30 ? G A 30 . ? 1_555 ?
23 AC5 4 U A 31 ? U A 31 . ? 1_555 ?
24 AC5 4 HOH H . ? HOH A 188 . ? 1_555 ?
25 AC6 7 U A 7 ? U A 7 . ? 1_555 ?
26 AC6 7 A A 8 ? A A 8 . ? 1_555 ?
27 AC6 7 U A 35 ? U A 35 . ? 1_555 ?
28 AC6 7 U A 42 ? U A 42 . ? 1_555 ?
29 AC6 7 G A 44 ? G A 44 . ? 1_555 ?
30 AC6 7 C A 79 ? C A 79 . ? 1_555 ?
31 AC6 7 A A 80 ? A A 80 . ? 1_555 ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 HOH
_pdbx_validate_close_contact.auth_seq_id_1 161
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 173
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.03
#
_diffrn_reflns.diffrn_id 1
_diffrn_reflns.pdbx_d_res_high 1.955
_diffrn_reflns.pdbx_d_res_low 62.895
_diffrn_reflns.pdbx_number_obs 22136
_diffrn_reflns.pdbx_Rmerge_I_obs ?
_diffrn_reflns.pdbx_Rsym_value 0.027
_diffrn_reflns.pdbx_chi_squared ?
_diffrn_reflns.av_sigmaI_over_netI 16.90
_diffrn_reflns.pdbx_redundancy 3.50
_diffrn_reflns.pdbx_percent_possible_obs 98.10
_diffrn_reflns.number 77168
_diffrn_reflns.pdbx_observed_criterion ?
_diffrn_reflns.limit_h_max ?
_diffrn_reflns.limit_h_min ?
_diffrn_reflns.limit_k_max ?
_diffrn_reflns.limit_k_min ?
_diffrn_reflns.limit_l_max ?
_diffrn_reflns.limit_l_min ?
#
loop_
_pdbx_diffrn_reflns_shell.diffrn_id
_pdbx_diffrn_reflns_shell.d_res_high
_pdbx_diffrn_reflns_shell.d_res_low
_pdbx_diffrn_reflns_shell.number_obs
_pdbx_diffrn_reflns_shell.rejects
_pdbx_diffrn_reflns_shell.Rmerge_I_obs
_pdbx_diffrn_reflns_shell.Rsym_value
_pdbx_diffrn_reflns_shell.chi_squared
_pdbx_diffrn_reflns_shell.redundancy
_pdbx_diffrn_reflns_shell.percent_possible_obs
1 8.74 62.90 ? ? 0.015 0.015 ? 2.90 86.90
1 6.18 8.74 ? ? 0.014 0.014 ? 3.30 99.40
1 5.05 6.18 ? ? 0.017 0.017 ? 3.30 99.10
1 4.37 5.05 ? ? 0.020 0.020 ? 3.20 99.30
1 3.91 4.37 ? ? 0.019 0.019 ? 3.30 98.70
1 3.57 3.91 ? ? 0.019 0.019 ? 3.20 97.90
1 3.30 3.57 ? ? 0.020 0.020 ? 3.30 97.50
1 3.09 3.30 ? ? 0.021 0.021 ? 3.50 97.30
1 2.91 3.09 ? ? 0.026 0.026 ? 3.50 98.00
1 2.76 2.91 ? ? 0.033 0.033 ? 3.50 99.20
1 2.64 2.76 ? ? 0.047 0.047 ? 3.50 98.30
1 2.52 2.64 ? ? 0.058 0.058 ? 3.50 99.90
1 2.42 2.52 ? ? 0.081 0.081 ? 3.50 97.60
1 2.34 2.42 ? ? 0.101 0.101 ? 3.60 99.50
1 2.26 2.34 ? ? 0.136 0.136 ? 3.60 97.00
1 2.19 2.26 ? ? 0.171 0.171 ? 3.50 98.70
1 2.12 2.19 ? ? 0.228 0.228 ? 3.60 99.70
1 2.06 2.12 ? ? 0.269 0.269 ? 3.60 94.60
1 2.01 2.06 ? ? 0.341 0.341 ? 3.60 99.20
1 1.95 2.01 ? ? 0.456 0.456 ? 3.70 98.00
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[3][3]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
'X-RAY DIFFRACTION' 1 ? refined 10.3440 -16.9718 15.3993 0.5477 0.3848 0.3606 0.3889 -0.0878 0.1061 0.4674 0.8952 0.1934 -0.0090
0.0911 -0.1448 0.0217 -0.0504 -0.0339 0.0466 0.1102 -0.1216 -0.0114 0.0466 -0.0159
'X-RAY DIFFRACTION' 2 ? refined 6.5979 -1.6680 28.7864 0.1661 0.2392 0.1135 0.1012 0.0083 0.0744 0.0183 0.5624 0.2209 0.0147
-0.0414 -0.2874 0.0364 -0.0355 -0.0613 0.0959 0.0436 -0.0026 0.0583 -0.0987 -0.0669
'X-RAY DIFFRACTION' 3 ? refined 10.1873 -10.5908 31.2087 0.3103 0.3430 0.2366 0.0852 0.0260 0.0531 0.3150 0.2918 0.5082 -0.0262
0.2115 -0.3101 0.0009 -0.0265 -0.1134 0.2221 0.1773 -0.0070 0.1746 -0.1278 0.1289
'X-RAY DIFFRACTION' 4 ? refined 2.3964 9.1789 7.5665 0.0521 0.3438 0.2286 0.1873 -0.0596 0.2725 0.0160 0.0237 0.0127 0.0034
0.0083 -0.0077 -0.0019 -0.0046 -0.0113 -0.0066 -0.0354 -0.0027 0.0539 0.0989 0.1005
'X-RAY DIFFRACTION' 5 ? refined 13.4808 -30.0767 18.0629 0.6521 0.3141 0.2361 0.3776 -0.0321 0.0047 0.0984 0.1119 0.1029 0.0402
0.0728 -0.0304 -0.0016 -0.1060 -0.0871 0.1236 0.0742 0.0306 -0.1480 0.1393 0.0649
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection_details
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
'X-RAY DIFFRACTION' 1 1 ? ? ? ? 'CHAIN A AND RESID 1:18' ? ? ? ? ?
'X-RAY DIFFRACTION' 2 2 ? ? ? ? 'CHAIN A AND RESID 19:35' ? ? ? ? ?
'X-RAY DIFFRACTION' 3 3 ? ? ? ? 'CHAIN A AND RESID 36:55' ? ? ? ? ?
'X-RAY DIFFRACTION' 4 4 ? ? ? ? 'CHAIN A AND RESID 56:71' ? ? ? ? ?
'X-RAY DIFFRACTION' 5 5 ? ? ? ? 'CHAIN A AND RESID 72:89' ? ? ? ? ?
#
loop_
_pdbx_phasing_MAD_shell.d_res_high
_pdbx_phasing_MAD_shell.d_res_low
_pdbx_phasing_MAD_shell.reflns_acentric
_pdbx_phasing_MAD_shell.fom_acentric
_pdbx_phasing_MAD_shell.reflns_centric
_pdbx_phasing_MAD_shell.fom_centric
_pdbx_phasing_MAD_shell.reflns
_pdbx_phasing_MAD_shell.fom
9.09 12.77 87 0.655 67 0.126 159 0.420
7.44 9.09 135 0.655 74 0.167 212 0.477
6.45 7.44 164 0.624 78 0.114 245 0.456
5.77 6.45 183 0.652 70 0.200 256 0.522
5.27 5.77 208 0.619 80 0.131 294 0.475
4.88 5.27 221 0.561 75 0.152 312 0.440
4.57 4.88 225 0.577 71 0.120 320 0.440
4.31 4.57 268 0.547 77 0.128 364 0.435
4.09 4.31 274 0.576 79 0.117 369 0.457
3.90 4.09 273 0.570 69 0.117 369 0.453
3.73 3.90 285 0.555 81 0.108 414 0.415
3.58 3.73 265 0.578 74 0.114 407 0.416
3.45 3.58 300 0.486 68 0.092 416 0.379
3.34 3.45 324 0.508 84 0.073 455 0.384
3.23 3.34 346 0.501 73 0.091 458 0.400
3.14 3.23 373 0.510 68 0.108 457 0.436
3.05 3.14 391 0.548 75 0.110 477 0.468
2.97 3.05 416 0.503 83 0.098 515 0.425
2.89 2.97 433 0.497 78 0.120 534 0.426
2.82 2.89 410 0.512 77 0.130 507 0.439
2.76 2.82 428 0.497 66 0.127 511 0.438
2.70 2.76 459 0.484 81 0.122 565 0.419
2.64 2.70 456 0.463 71 0.197 554 0.414
2.59 2.64 475 0.483 82 0.144 580 0.423
2.54 2.59 479 0.451 70 0.123 566 0.402
2.49 2.54 485 0.462 79 0.162 583 0.414
2.44 2.49 503 0.416 70 0.122 595 0.375
2.40 2.44 552 0.393 78 0.156 643 0.361
2.36 2.40 517 0.407 67 0.144 607 0.372
2.32 2.36 525 0.381 80 0.171 620 0.350
2.29 2.32 540 0.346 68 0.199 616 0.328
2.25 2.29 545 0.324 78 0.148 652 0.300
2.22 2.25 557 0.305 70 0.187 653 0.291
2.19 2.22 580 0.322 78 0.159 673 0.302
2.16 2.19 592 0.332 73 0.195 675 0.316
2.13 2.16 590 0.300 81 0.220 681 0.288
2.10 2.13 579 0.307 64 0.174 654 0.293
2.07 2.10 610 0.287 78 0.169 710 0.272
2.05 2.07 604 0.278 74 0.163 706 0.266
2.02 2.05 639 0.302 77 0.190 727 0.289
2.00 2.02 623 0.276 75 0.149 709 0.263
1.97 2.00 648 0.295 74 0.178 729 0.283
1.95 1.97 639 0.274 75 0.135 720 0.260
#
_pdbx_phasing_dm.entry_id 3SD3
_pdbx_phasing_dm.fom_acentric 0.610
_pdbx_phasing_dm.fom_centric 0.550
_pdbx_phasing_dm.fom 0.600
_pdbx_phasing_dm.reflns_acentric 19090
_pdbx_phasing_dm.reflns_centric 3252
_pdbx_phasing_dm.reflns 22342
#
loop_
_pdbx_phasing_dm_shell.d_res_high
_pdbx_phasing_dm_shell.d_res_low
_pdbx_phasing_dm_shell.delta_phi_final
_pdbx_phasing_dm_shell.delta_phi_initial
_pdbx_phasing_dm_shell.fom_acentric
_pdbx_phasing_dm_shell.fom_centric
_pdbx_phasing_dm_shell.fom
_pdbx_phasing_dm_shell.reflns_acentric
_pdbx_phasing_dm_shell.reflns_centric
_pdbx_phasing_dm_shell.reflns
3.500 5.600 ? ? 0.940 0.870 0.920 2440 633 3073
2.800 3.500 ? ? 0.850 0.710 0.830 3196 592 3788
2.400 2.800 ? ? 0.660 0.420 0.630 3268 492 3760
2.100 2.400 ? ? 0.440 0.290 0.420 5868 751 6619
2.000 2.100 ? ? 0.340 0.200 0.320 3635 426 4061
#
_phasing.method SAD
#
_phasing_MAD.entry_id 3SD3
_phasing_MAD.pdbx_d_res_high 1.95
_phasing_MAD.pdbx_d_res_low 79.04
_phasing_MAD.pdbx_reflns_acentric 18232
_phasing_MAD.pdbx_fom_acentric 0.414
_phasing_MAD.pdbx_reflns_centric 3252
_phasing_MAD.pdbx_fom_centric 0.142
_phasing_MAD.pdbx_reflns 22339
_phasing_MAD.pdbx_fom 0.365
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A OP3 O N N 1
A P P N N 2
A OP1 O N N 3
A OP2 O N N 4
A "O5'" O N N 5
A "C5'" C N N 6
A "C4'" C N R 7
A "O4'" O N N 8
A "C3'" C N S 9
A "O3'" O N N 10
A "C2'" C N R 11
A "O2'" O N N 12
A "C1'" C N R 13
A N9 N Y N 14
A C8 C Y N 15
A N7 N Y N 16
A C5 C Y N 17
A C6 C Y N 18
A N6 N N N 19
A N1 N Y N 20
A C2 C Y N 21
A N3 N Y N 22
A C4 C Y N 23
A HOP3 H N N 24
A HOP2 H N N 25
A "H5'" H N N 26
A "H5''" H N N 27
A "H4'" H N N 28
A "H3'" H N N 29
A "HO3'" H N N 30
A "H2'" H N N 31
A "HO2'" H N N 32
A "H1'" H N N 33
A H8 H N N 34
A H61 H N N 35
A H62 H N N 36
A H2 H N N 37
C OP3 O N N 38
C P P N N 39
C OP1 O N N 40
C OP2 O N N 41
C "O5'" O N N 42
C "C5'" C N N 43
C "C4'" C N R 44
C "O4'" O N N 45
C "C3'" C N S 46
C "O3'" O N N 47
C "C2'" C N R 48
C "O2'" O N N 49
C "C1'" C N R 50
C N1 N N N 51
C C2 C N N 52
C O2 O N N 53
C N3 N N N 54
C C4 C N N 55
C N4 N N N 56
C C5 C N N 57
C C6 C N N 58
C HOP3 H N N 59
C HOP2 H N N 60
C "H5'" H N N 61
C "H5''" H N N 62
C "H4'" H N N 63
C "H3'" H N N 64
C "HO3'" H N N 65
C "H2'" H N N 66
C "HO2'" H N N 67
C "H1'" H N N 68
C H41 H N N 69
C H42 H N N 70
C H5 H N N 71
C H6 H N N 72
FFO N1 N N N 73
FFO C2 C N N 74
FFO NA2 N N N 75
FFO N3 N N N 76
FFO C4 C N N 77
FFO O4 O N N 78
FFO C4A C N N 79
FFO N5 N N N 80
FFO C6 C N S 81
FFO C7 C N N 82
FFO N8 N N N 83
FFO C8A C N N 84
FFO C9 C N N 85
FFO N10 N N N 86
FFO C11 C Y N 87
FFO C12 C Y N 88
FFO C13 C Y N 89
FFO C14 C Y N 90
FFO C15 C Y N 91
FFO C16 C Y N 92
FFO C C N N 93
FFO O O N N 94
FFO N N N N 95
FFO CA C N S 96
FFO CB C N N 97
FFO CG C N N 98
FFO CD C N N 99
FFO OE1 O N N 100
FFO OE2 O N N 101
FFO CT C N N 102
FFO O1 O N N 103
FFO O2 O N N 104
FFO C5A C N N 105
FFO O5B O N N 106
FFO HN21 H N N 107
FFO HN22 H N N 108
FFO H6 H N N 109
FFO H7 H N N 110
FFO H91 H N N 111
FFO H92 H N N 112
FFO HN0 H N N 113
FFO H12 H N N 114
FFO H13 H N N 115
FFO H15 H N N 116
FFO H16 H N N 117
FFO HN H N N 118
FFO HA H N N 119
FFO HB1 H N N 120
FFO HB2 H N N 121
FFO HG1 H N N 122
FFO HG2 H N N 123
FFO HOE2 H N N 124
FFO HO2 H N N 125
FFO H5A H N N 126
FFO H22 H N N 127
FFO H23 H N N 128
FFO H24 H N N 129
G OP3 O N N 130
G P P N N 131
G OP1 O N N 132
G OP2 O N N 133
G "O5'" O N N 134
G "C5'" C N N 135
G "C4'" C N R 136
G "O4'" O N N 137
G "C3'" C N S 138
G "O3'" O N N 139
G "C2'" C N R 140
G "O2'" O N N 141
G "C1'" C N R 142
G N9 N Y N 143
G C8 C Y N 144
G N7 N Y N 145
G C5 C Y N 146
G C6 C N N 147
G O6 O N N 148
G N1 N N N 149
G C2 C N N 150
G N2 N N N 151
G N3 N N N 152
G C4 C Y N 153
G HOP3 H N N 154
G HOP2 H N N 155
G "H5'" H N N 156
G "H5''" H N N 157
G "H4'" H N N 158
G "H3'" H N N 159
G "HO3'" H N N 160
G "H2'" H N N 161
G "HO2'" H N N 162
G "H1'" H N N 163
G H8 H N N 164
G H1 H N N 165
G H21 H N N 166
G H22 H N N 167
HOH O O N N 168
HOH H1 H N N 169
HOH H2 H N N 170
IRI IR IR N N 171
IRI N1 N N N 172
IRI N2 N N N 173
IRI N3 N N N 174
IRI N4 N N N 175
IRI N5 N N N 176
IRI N6 N N N 177
IRI HN11 H N N 178
IRI HN12 H N N 179
IRI HN13 H N N 180
IRI HN21 H N N 181
IRI HN22 H N N 182
IRI HN23 H N N 183
IRI HN31 H N N 184
IRI HN32 H N N 185
IRI HN33 H N N 186
IRI HN41 H N N 187
IRI HN42 H N N 188
IRI HN43 H N N 189
IRI HN51 H N N 190
IRI HN52 H N N 191
IRI HN53 H N N 192
IRI HN61 H N N 193
IRI HN62 H N N 194
IRI HN63 H N N 195
U OP3 O N N 196
U P P N N 197
U OP1 O N N 198
U OP2 O N N 199
U "O5'" O N N 200
U "C5'" C N N 201
U "C4'" C N R 202
U "O4'" O N N 203
U "C3'" C N S 204
U "O3'" O N N 205
U "C2'" C N R 206
U "O2'" O N N 207
U "C1'" C N R 208
U N1 N N N 209
U C2 C N N 210
U O2 O N N 211
U N3 N N N 212
U C4 C N N 213
U O4 O N N 214
U C5 C N N 215
U C6 C N N 216
U HOP3 H N N 217
U HOP2 H N N 218
U "H5'" H N N 219
U "H5''" H N N 220
U "H4'" H N N 221
U "H3'" H N N 222
U "HO3'" H N N 223
U "H2'" H N N 224
U "HO2'" H N N 225
U "H1'" H N N 226
U H3 H N N 227
U H5 H N N 228
U H6 H N N 229
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A OP3 P sing N N 1
A OP3 HOP3 sing N N 2
A P OP1 doub N N 3
A P OP2 sing N N 4
A P "O5'" sing N N 5
A OP2 HOP2 sing N N 6
A "O5'" "C5'" sing N N 7
A "C5'" "C4'" sing N N 8
A "C5'" "H5'" sing N N 9
A "C5'" "H5''" sing N N 10
A "C4'" "O4'" sing N N 11
A "C4'" "C3'" sing N N 12
A "C4'" "H4'" sing N N 13
A "O4'" "C1'" sing N N 14
A "C3'" "O3'" sing N N 15
A "C3'" "C2'" sing N N 16
A "C3'" "H3'" sing N N 17
A "O3'" "HO3'" sing N N 18
A "C2'" "O2'" sing N N 19
A "C2'" "C1'" sing N N 20
A "C2'" "H2'" sing N N 21
A "O2'" "HO2'" sing N N 22
A "C1'" N9 sing N N 23
A "C1'" "H1'" sing N N 24
A N9 C8 sing Y N 25
A N9 C4 sing Y N 26
A C8 N7 doub Y N 27
A C8 H8 sing N N 28
A N7 C5 sing Y N 29
A C5 C6 sing Y N 30
A C5 C4 doub Y N 31
A C6 N6 sing N N 32
A C6 N1 doub Y N 33
A N6 H61 sing N N 34
A N6 H62 sing N N 35
A N1 C2 sing Y N 36
A C2 N3 doub Y N 37
A C2 H2 sing N N 38
A N3 C4 sing Y N 39
C OP3 P sing N N 40
C OP3 HOP3 sing N N 41
C P OP1 doub N N 42
C P OP2 sing N N 43
C P "O5'" sing N N 44
C OP2 HOP2 sing N N 45
C "O5'" "C5'" sing N N 46
C "C5'" "C4'" sing N N 47
C "C5'" "H5'" sing N N 48
C "C5'" "H5''" sing N N 49
C "C4'" "O4'" sing N N 50
C "C4'" "C3'" sing N N 51
C "C4'" "H4'" sing N N 52
C "O4'" "C1'" sing N N 53
C "C3'" "O3'" sing N N 54
C "C3'" "C2'" sing N N 55
C "C3'" "H3'" sing N N 56
C "O3'" "HO3'" sing N N 57
C "C2'" "O2'" sing N N 58
C "C2'" "C1'" sing N N 59
C "C2'" "H2'" sing N N 60
C "O2'" "HO2'" sing N N 61
C "C1'" N1 sing N N 62
C "C1'" "H1'" sing N N 63
C N1 C2 sing N N 64
C N1 C6 sing N N 65
C C2 O2 doub N N 66
C C2 N3 sing N N 67
C N3 C4 doub N N 68
C C4 N4 sing N N 69
C C4 C5 sing N N 70
C N4 H41 sing N N 71
C N4 H42 sing N N 72
C C5 C6 doub N N 73
C C5 H5 sing N N 74
C C6 H6 sing N N 75
FFO N1 C2 doub N N 76
FFO N1 C8A sing N N 77
FFO C2 NA2 sing N N 78
FFO C2 N3 sing N N 79
FFO NA2 HN21 sing N N 80
FFO NA2 HN22 sing N N 81
FFO N3 C4 sing N N 82
FFO N3 H22 sing N N 83
FFO C4 O4 doub N N 84
FFO C4 C4A sing N N 85
FFO C4A N5 sing N N 86
FFO C4A C8A doub N N 87
FFO N5 C6 sing N N 88
FFO N5 C5A sing N N 89
FFO C6 C7 sing N N 90
FFO C6 C9 sing N N 91
FFO C6 H6 sing N N 92
FFO C7 N8 sing N N 93
FFO C7 H7 sing N N 94
FFO C7 H23 sing N N 95
FFO N8 C8A sing N N 96
FFO N8 H24 sing N N 97
FFO C9 N10 sing N N 98
FFO C9 H91 sing N N 99
FFO C9 H92 sing N N 100
FFO N10 C14 sing N N 101
FFO N10 HN0 sing N N 102
FFO C11 C12 doub Y N 103
FFO C11 C16 sing Y N 104
FFO C11 C sing N N 105
FFO C12 C13 sing Y N 106
FFO C12 H12 sing N N 107
FFO C13 C14 doub Y N 108
FFO C13 H13 sing N N 109
FFO C14 C15 sing Y N 110
FFO C15 C16 doub Y N 111
FFO C15 H15 sing N N 112
FFO C16 H16 sing N N 113
FFO C O doub N N 114
FFO C N sing N N 115
FFO N CA sing N N 116
FFO N HN sing N N 117
FFO CA CB sing N N 118
FFO CA CT sing N N 119
FFO CA HA sing N N 120
FFO CB CG sing N N 121
FFO CB HB1 sing N N 122
FFO CB HB2 sing N N 123
FFO CG CD sing N N 124
FFO CG HG1 sing N N 125
FFO CG HG2 sing N N 126
FFO CD OE1 doub N N 127
FFO CD OE2 sing N N 128
FFO OE2 HOE2 sing N N 129
FFO CT O1 doub N N 130
FFO CT O2 sing N N 131
FFO O2 HO2 sing N N 132
FFO C5A O5B doub N N 133
FFO C5A H5A sing N N 134
G OP3 P sing N N 135
G OP3 HOP3 sing N N 136
G P OP1 doub N N 137
G P OP2 sing N N 138
G P "O5'" sing N N 139
G OP2 HOP2 sing N N 140
G "O5'" "C5'" sing N N 141
G "C5'" "C4'" sing N N 142
G "C5'" "H5'" sing N N 143
G "C5'" "H5''" sing N N 144
G "C4'" "O4'" sing N N 145
G "C4'" "C3'" sing N N 146
G "C4'" "H4'" sing N N 147
G "O4'" "C1'" sing N N 148
G "C3'" "O3'" sing N N 149
G "C3'" "C2'" sing N N 150
G "C3'" "H3'" sing N N 151
G "O3'" "HO3'" sing N N 152
G "C2'" "O2'" sing N N 153
G "C2'" "C1'" sing N N 154
G "C2'" "H2'" sing N N 155
G "O2'" "HO2'" sing N N 156
G "C1'" N9 sing N N 157
G "C1'" "H1'" sing N N 158
G N9 C8 sing Y N 159
G N9 C4 sing Y N 160
G C8 N7 doub Y N 161
G C8 H8 sing N N 162
G N7 C5 sing Y N 163
G C5 C6 sing N N 164
G C5 C4 doub Y N 165
G C6 O6 doub N N 166
G C6 N1 sing N N 167
G N1 C2 sing N N 168
G N1 H1 sing N N 169
G C2 N2 sing N N 170
G C2 N3 doub N N 171
G N2 H21 sing N N 172
G N2 H22 sing N N 173
G N3 C4 sing N N 174
HOH O H1 sing N N 175
HOH O H2 sing N N 176
IRI IR N1 sing N N 177
IRI IR N2 sing N N 178
IRI IR N3 sing N N 179
IRI IR N4 sing N N 180
IRI IR N5 sing N N 181
IRI IR N6 sing N N 182
IRI N1 HN11 sing N N 183
IRI N1 HN12 sing N N 184
IRI N1 HN13 sing N N 185
IRI N2 HN21 sing N N 186
IRI N2 HN22 sing N N 187
IRI N2 HN23 sing N N 188
IRI N3 HN31 sing N N 189
IRI N3 HN32 sing N N 190
IRI N3 HN33 sing N N 191
IRI N4 HN41 sing N N 192
IRI N4 HN42 sing N N 193
IRI N4 HN43 sing N N 194
IRI N5 HN51 sing N N 195
IRI N5 HN52 sing N N 196
IRI N5 HN53 sing N N 197
IRI N6 HN61 sing N N 198
IRI N6 HN62 sing N N 199
IRI N6 HN63 sing N N 200
U OP3 P sing N N 201
U OP3 HOP3 sing N N 202
U P OP1 doub N N 203
U P OP2 sing N N 204
U P "O5'" sing N N 205
U OP2 HOP2 sing N N 206
U "O5'" "C5'" sing N N 207
U "C5'" "C4'" sing N N 208
U "C5'" "H5'" sing N N 209
U "C5'" "H5''" sing N N 210
U "C4'" "O4'" sing N N 211
U "C4'" "C3'" sing N N 212
U "C4'" "H4'" sing N N 213
U "O4'" "C1'" sing N N 214
U "C3'" "O3'" sing N N 215
U "C3'" "C2'" sing N N 216
U "C3'" "H3'" sing N N 217
U "O3'" "HO3'" sing N N 218
U "C2'" "O2'" sing N N 219
U "C2'" "C1'" sing N N 220
U "C2'" "H2'" sing N N 221
U "O2'" "HO2'" sing N N 222
U "C1'" N1 sing N N 223
U "C1'" "H1'" sing N N 224
U N1 C2 sing N N 225
U N1 C6 sing N N 226
U C2 O2 doub N N 227
U C2 N3 sing N N 228
U N3 C4 sing N N 229
U N3 H3 sing N N 230
U C4 O4 doub N N 231
U C4 C5 sing N N 232
U C5 C6 doub N N 233
U C5 H5 sing N N 234
U C6 H6 sing N N 235
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3SD3 'double helix'
3SD3 'a-form double helix'
3SD3 'bulge loop'
3SD3 'mismatched base pair'
3SD3 'triple helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A G 1 1_555 A C 88 1_555 -0.935 -0.117 0.029 -0.711 -7.218 2.564 1 A_G1:C88_A A 1 ? A 88 ? 19 1
1 A G 2 1_555 A C 87 1_555 -0.678 -0.090 -0.168 -10.993 -15.596 3.851 2 A_G2:C87_A A 2 ? A 87 ? 19 1
1 A A 3 1_555 A U 86 1_555 0.138 -0.061 0.235 -6.333 -13.153 3.294 3 A_A3:U86_A A 3 ? A 86 ? 20 1
1 A G 4 1_555 A C 85 1_555 -0.007 0.134 -0.087 -14.891 -22.476 -0.580 4 A_G4:C85_A A 4 ? A 85 ? 19 1
1 A A 5 1_555 A G 84 1_555 -0.004 1.606 -0.395 -18.088 -12.496 -15.458 5 A_A5:G84_A A 5 ? A 84 ? 8 1
1 A G 37 1_555 A C 83 1_555 -0.926 0.123 -0.418 -9.431 -3.528 7.607 6 A_G37:C83_A A 37 ? A 83 ? ? 1
1 A G 38 1_555 A C 82 1_555 -0.681 -0.153 -0.380 -12.697 -8.098 3.282 7 A_G38:C82_A A 38 ? A 82 ? 19 1
1 A A 39 1_555 A U 81 1_555 0.214 -0.071 0.110 -1.095 -0.456 1.286 8 A_A39:U81_A A 39 ? A 81 ? 20 1
1 A U 40 1_555 A A 80 1_555 0.528 -0.037 -0.043 -13.485 -20.162 3.362 9 A_U40:A80_A A 40 ? A 80 ? 20 1
1 A G 41 1_555 A C 79 1_555 -0.389 0.227 -0.580 -39.744 -8.156 5.428 10 A_G41:C79_A A 41 ? A 79 ? 19 1
1 A U 42 1_555 A U 35 1_555 -3.752 -0.614 -1.184 15.625 -15.425 -94.027 11 A_U42:U35_A A 42 ? A 35 ? ? 4
1 A G 44 1_555 A A 34 1_555 -0.115 1.518 -0.299 4.717 -15.865 -18.503 12 A_G44:A34_A A 44 ? A 34 ? 8 1
1 A U 45 1_555 A A 33 1_555 0.012 -0.022 0.246 3.439 -15.489 -0.915 13 A_U45:A33_A A 45 ? A 33 ? 20 1
1 A C 46 1_555 A G 32 1_555 0.283 -0.104 0.083 4.722 -13.754 -0.838 14 A_C46:G32_A A 46 ? A 32 ? 19 1
1 A A 47 1_555 A U 31 1_555 0.151 -0.020 0.137 5.820 -16.630 1.404 15 A_A47:U31_A A 47 ? A 31 ? 20 1
1 A C 48 1_555 A G 30 1_555 0.307 -0.025 -0.241 15.067 -20.472 4.903 16 A_C48:G30_A A 48 ? A 30 ? 19 1
1 A A 49 1_555 A U 29 1_555 0.076 -0.118 -0.197 0.925 -14.042 -0.331 17 A_A49:U29_A A 49 ? A 29 ? 20 1
1 A C 50 1_555 A G 28 1_555 0.412 -0.242 -0.456 10.245 -20.742 4.829 18 A_C50:G28_A A 50 ? A 28 ? 19 1
1 A A 51 1_555 A U 27 1_555 -0.220 0.120 -0.154 -6.641 -19.768 6.419 19 A_A51:U27_A A 51 ? A 27 ? 20 1
1 A A 52 1_555 A G 26 1_555 -0.564 1.265 -0.886 -17.730 -22.243 -9.608 20 A_A52:G26_A A 52 ? A 26 ? 8 1
1 A G 54 1_555 A G 24 1_555 7.289 -2.505 0.706 -15.957 -9.136 -18.128 21 A_G54:G24_A A 54 ? A 24 ? ? ?
1 A A 55 1_555 A A 23 1_555 4.186 1.435 -0.525 20.979 -11.591 -110.369 22 A_A55:A23_A A 55 ? A 23 ? 5 4
1 A G 67 1_555 A C 18 1_555 -0.158 -0.186 -0.141 -5.240 -12.435 -2.599 23 A_G67:C18_A A 67 ? A 18 ? 19 1
1 A G 19 1_555 A C 66 1_555 -0.255 -0.102 0.044 -10.474 -27.974 2.621 24 A_G19:C66_A A 19 ? A 66 ? 19 1
1 A U 20 1_555 A G 65 1_555 2.142 -0.424 0.122 -7.459 -14.081 -10.093 25 A_U20:G65_A A 20 ? A 65 ? 28 1
1 A G 57 1_555 A C 64 1_555 -0.080 0.012 -0.170 -10.777 -6.599 -0.160 26 A_G57:C64_A A 57 ? A 64 ? 19 1
1 A C 58 1_555 A G 63 1_555 0.363 -0.248 -0.119 5.594 -4.070 -1.550 27 A_C58:G63_A A 58 ? A 63 ? 19 1
1 A G 59 1_555 A A 62 1_555 8.213 -5.218 0.313 13.289 -4.774 -51.135 28 A_G59:A62_A A 59 ? A 62 ? ? ?
1 A A 8 1_555 A G 78 1_555 -7.402 -5.370 0.148 -14.318 3.304 -23.340 29 A_A8:G78_A A 8 ? A 78 ? ? ?
1 A G 9 1_555 A U 77 1_555 -2.098 -0.442 -0.259 1.020 -2.488 2.968 30 A_G9:U77_A A 9 ? A 77 ? 28 1
1 A A 10 1_555 A U 76 1_555 -0.447 -0.106 -0.142 -4.508 -8.365 1.972 31 A_A10:U76_A A 10 ? A 76 ? 20 1
1 A U 11 1_555 A A 75 1_555 0.081 -0.168 -0.242 -1.726 -14.019 3.465 32 A_U11:A75_A A 11 ? A 75 ? 20 1
1 A G 12 1_555 A C 74 1_555 -0.155 -0.050 0.039 -7.801 -12.467 2.005 33 A_G12:C74_A A 12 ? A 74 ? 19 1
1 A A 13 1_555 A U 73 1_555 -0.003 -0.030 -0.042 -4.078 -16.323 -0.284 34 A_A13:U73_A A 13 ? A 73 ? 20 1
1 A U 14 1_555 A A 72 1_555 0.243 0.013 0.110 -7.389 -20.440 -1.454 35 A_U14:A72_A A 14 ? A 72 ? 20 1
1 A U 15 1_555 A A 71 1_555 0.162 0.025 0.073 -8.144 -16.002 -0.218 36 A_U15:A71_A A 15 ? A 71 ? 20 1
1 A C 16 1_555 A G 70 1_555 0.456 -0.017 0.188 3.430 -7.756 -2.881 37 A_C16:G70_A A 16 ? A 70 ? 19 1
1 A G 17 1_555 A U 69 1_555 -2.255 -0.510 -0.147 2.624 -9.283 0.973 38 A_G17:U69_A A 17 ? A 69 ? 28 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A G 1 1_555 A C 88 1_555 A G 2 1_555 A C 87 1_555 -0.260 -1.814 3.439 0.008 7.067 34.852 -4.002 0.426 3.025 11.651
-0.012 35.540 1 AA_G1G2:C87C88_AA A 1 ? A 88 ? A 2 ? A 87 ?
1 A G 2 1_555 A C 87 1_555 A A 3 1_555 A U 86 1_555 0.137 -1.339 3.155 -2.007 1.806 35.548 -2.437 -0.501 3.073 2.952
3.281 35.647 2 AA_G2A3:U86C87_AA A 2 ? A 87 ? A 3 ? A 86 ?
1 A A 3 1_555 A U 86 1_555 A G 4 1_555 A C 85 1_555 0.290 -1.766 3.347 6.428 9.035 33.308 -4.241 0.450 2.795 15.246
-10.847 35.056 3 AA_A3G4:C85U86_AA A 3 ? A 86 ? A 4 ? A 85 ?
1 A G 4 1_555 A C 85 1_555 A A 5 1_555 A G 84 1_555 -0.974 -1.565 3.263 6.072 -0.223 36.143 -2.460 2.362 3.074 -0.356
-9.702 36.633 4 AA_G4A5:G84C85_AA A 4 ? A 85 ? A 5 ? A 84 ?
1 A A 5 1_555 A G 84 1_555 A G 37 1_555 A C 83 1_555 -1.601 -3.341 3.542 13.318 6.020 45.375 -4.608 3.012 2.564 7.575
-16.759 47.552 5 AA_A5G37:C83G84_AA A 5 ? A 84 ? A 37 ? A 83 ?
1 A G 37 1_555 A C 83 1_555 A G 38 1_555 A C 82 1_555 -0.760 -1.790 3.256 -2.108 8.195 35.516 -3.929 0.938 2.826 13.204
3.396 36.479 6 AA_G37G38:C82C83_AA A 37 ? A 83 ? A 38 ? A 82 ?
1 A G 38 1_555 A C 82 1_555 A A 39 1_555 A U 81 1_555 -0.639 -1.600 2.892 -5.348 8.255 30.703 -4.120 0.351 2.464 15.111
9.790 32.204 7 AA_G38A39:U81C82_AA A 38 ? A 82 ? A 39 ? A 81 ?
1 A A 39 1_555 A U 81 1_555 A U 40 1_555 A A 80 1_555 0.951 -1.651 3.562 6.654 16.558 33.457 -4.701 -0.604 2.625 26.546
-10.668 37.798 8 AA_A39U40:A80U81_AA A 39 ? A 81 ? A 40 ? A 80 ?
1 A U 40 1_555 A A 80 1_555 A G 41 1_555 A C 79 1_555 1.868 -0.847 3.640 16.778 14.050 37.593 -2.788 -0.573 3.612 19.879
-23.739 43.299 9 AA_U40G41:C79A80_AA A 40 ? A 80 ? A 41 ? A 79 ?
1 A G 41 1_555 A C 79 1_555 A U 42 1_555 A U 35 1_555 -2.972 1.794 2.690 -13.565 11.723 46.289 1.263 2.532 3.700 14.298
16.545 49.461 10 AA_G41U42:U35C79_AA A 41 ? A 79 ? A 42 ? A 35 ?
1 A U 42 1_555 A U 35 1_555 A G 44 1_555 A A 34 1_555 1.915 -2.362 3.388 -8.340 -0.559 58.979 -2.351 -2.350 3.136 -0.565
8.425 59.516 11 AA_U42G44:A34U35_AA A 42 ? A 35 ? A 44 ? A 34 ?
1 A G 44 1_555 A A 34 1_555 A U 45 1_555 A A 33 1_555 0.835 -1.625 3.204 -5.747 1.592 34.624 -2.920 -2.199 2.957 2.651
9.567 35.119 12 AA_G44U45:A33A34_AA A 44 ? A 34 ? A 45 ? A 33 ?
1 A U 45 1_555 A A 33 1_555 A C 46 1_555 A G 32 1_555 0.339 -1.608 3.256 0.010 -1.174 35.724 -2.450 -0.551 3.305 -1.912
-0.017 35.743 13 AA_U45C46:G32A33_AA A 45 ? A 33 ? A 46 ? A 32 ?
1 A C 46 1_555 A G 32 1_555 A A 47 1_555 A U 31 1_555 -0.666 -1.562 3.147 -1.309 6.934 30.720 -4.060 1.002 2.763 12.875
2.430 31.501 14 AA_C46A47:U31G32_AA A 46 ? A 32 ? A 47 ? A 31 ?
1 A A 47 1_555 A U 31 1_555 A C 48 1_555 A G 30 1_555 0.440 -1.161 3.107 4.174 3.060 32.666 -2.529 -0.108 3.020 5.398
-7.363 33.062 15 AA_A47C48:G30U31_AA A 47 ? A 31 ? A 48 ? A 30 ?
1 A C 48 1_555 A G 30 1_555 A A 49 1_555 A U 29 1_555 -0.655 -1.328 3.540 -1.012 15.848 31.283 -4.589 0.938 2.607 27.298
1.742 34.993 16 AA_C48A49:U29G30_AA A 48 ? A 30 ? A 49 ? A 29 ?
1 A A 49 1_555 A U 29 1_555 A C 50 1_555 A G 28 1_555 0.475 -1.021 3.074 4.042 7.537 32.385 -2.911 -0.216 2.809 13.227
-7.093 33.466 17 AA_A49C50:G28U29_AA A 49 ? A 29 ? A 50 ? A 28 ?
1 A C 50 1_555 A G 28 1_555 A A 51 1_555 A U 27 1_555 0.466 -1.534 3.606 0.441 16.422 30.003 -5.201 -0.725 2.467 29.136
-0.782 34.115 18 AA_C50A51:U27G28_AA A 50 ? A 28 ? A 51 ? A 27 ?
1 A A 51 1_555 A U 27 1_555 A A 52 1_555 A G 26 1_555 -0.641 -2.002 3.585 6.055 10.369 29.204 -5.573 2.283 2.562 19.554
-11.419 31.527 19 AA_A51A52:G26U27_AA A 51 ? A 27 ? A 52 ? A 26 ?
1 A A 52 1_555 A G 26 1_555 A G 54 1_555 A G 24 1_555 0.250 -2.415 6.794 7.058 15.364 91.636 -2.256 0.098 6.430 10.640
-4.888 92.840 20 AA_A52G54:G24G26_AA A 52 ? A 26 ? A 54 ? A 24 ?
1 A G 54 1_555 A G 24 1_555 A A 55 1_555 A A 23 1_555 -4.650 -0.241 2.661 10.176 -2.885 16.705 -0.114 15.633 -0.090 -8.865
-31.273 19.751 21 AA_G54A55:A23G24_AA A 54 ? A 24 ? A 55 ? A 23 ?
1 A A 55 1_555 A A 23 1_555 A G 67 1_555 A C 18 1_555 0.797 1.345 6.957 -38.817 -130.448 35.508 3.568 -1.274 0.836 -79.547
23.671 138.292 22 AA_A55G67:C18A23_AA A 55 ? A 23 ? A 67 ? A 18 ?
1 A G 19 1_555 A C 66 1_555 A U 20 1_555 A G 65 1_555 -0.352 -1.023 3.071 1.227 3.457 46.185 -1.573 0.544 2.981 4.398
-1.561 46.322 23 AA_G19U20:G65C66_AA A 19 ? A 66 ? A 20 ? A 65 ?
1 A U 20 1_555 A G 65 1_555 A G 57 1_555 A C 64 1_555 -1.960 -2.307 3.244 4.192 5.300 30.984 -5.098 4.280 2.544 9.775
-7.732 31.694 24 AA_U20G57:C64G65_AA A 20 ? A 65 ? A 57 ? A 64 ?
1 A G 57 1_555 A C 64 1_555 A C 58 1_555 A G 63 1_555 0.954 -2.331 2.965 1.867 -0.703 27.573 -4.720 -1.578 3.079 -1.473
-3.910 27.643 25 AA_G57C58:G63C64_AA A 57 ? A 64 ? A 58 ? A 63 ?
1 A C 58 1_555 A G 63 1_555 A G 59 1_555 A A 62 1_555 -4.687 -1.916 3.171 -1.580 2.913 55.306 -2.227 4.951 3.197 3.135
1.701 55.397 26 AA_C58G59:A62G63_AA A 58 ? A 63 ? A 59 ? A 62 ?
1 A A 8 1_555 A G 78 1_555 A G 9 1_555 A U 77 1_555 2.580 -1.362 2.950 0.291 5.823 48.582 -2.034 -3.097 2.794 7.048
-0.352 48.910 27 AA_A8G9:U77G78_AA A 8 ? A 78 ? A 9 ? A 77 ?
1 A G 9 1_555 A U 77 1_555 A A 10 1_555 A U 76 1_555 -0.656 -1.927 3.412 -3.647 5.434 37.423 -3.664 0.537 3.159 8.391
5.631 37.970 28 AA_G9A10:U76U77_AA A 9 ? A 77 ? A 10 ? A 76 ?
1 A A 10 1_555 A U 76 1_555 A U 11 1_555 A A 75 1_555 -0.159 -1.355 3.175 2.907 7.602 34.315 -3.284 0.662 2.798 12.664
-4.843 35.239 29 AA_A10U11:A75U76_AA A 10 ? A 76 ? A 11 ? A 75 ?
1 A U 11 1_555 A A 75 1_555 A G 12 1_555 A C 74 1_555 0.195 -1.246 3.275 -1.027 12.892 30.852 -4.154 -0.497 2.557 23.007
1.832 33.392 30 AA_U11G12:C74A75_AA A 11 ? A 75 ? A 12 ? A 74 ?
1 A G 12 1_555 A C 74 1_555 A A 13 1_555 A U 73 1_555 -0.176 -1.060 3.109 0.972 6.497 33.310 -2.775 0.445 2.851 11.198
-1.676 33.933 31 AA_G12A13:U73C74_AA A 12 ? A 74 ? A 13 ? A 73 ?
1 A A 13 1_555 A U 73 1_555 A U 14 1_555 A A 72 1_555 -0.140 -1.232 3.277 -0.338 13.034 32.342 -3.914 0.186 2.604 22.302
0.578 34.806 32 AA_A13U14:A72U73_AA A 13 ? A 73 ? A 14 ? A 72 ?
1 A U 14 1_555 A A 72 1_555 A U 15 1_555 A A 71 1_555 0.220 -1.041 3.213 -0.083 8.691 33.650 -3.000 -0.380 2.863 14.709
0.140 34.723 33 AA_U14U15:A71A72_AA A 14 ? A 72 ? A 15 ? A 71 ?
1 A U 15 1_555 A A 71 1_555 A C 16 1_555 A G 70 1_555 -0.178 -1.058 3.038 -2.042 1.444 31.650 -2.179 -0.021 2.993 2.643
3.736 31.746 34 AA_U15C16:G70A71_AA A 15 ? A 71 ? A 16 ? A 70 ?
1 A C 16 1_555 A G 70 1_555 A G 17 1_555 A U 69 1_555 1.677 -2.464 3.251 2.698 5.064 20.471 -8.638 -3.505 2.763 13.900
-7.407 21.252 35 AA_C16G17:U69G70_AA A 16 ? A 70 ? A 17 ? A 69 ?
#
_atom_sites.entry_id 3SD3
_atom_sites.fract_transf_matrix[1][1] 0.036337
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.014579
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.006326
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
IR
N
O
P
#
loop_