HEADER HYDROLASE 08-JUN-11 3SD7 TITLE 1.7 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE FROM TITLE 2 CLOSTRIDIUM DIFFICILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: CD3605; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, HALOACID DEHALOGENASE-LIKE HYDROLASE, HYDROLASE, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,L.PAPAZISI,W.F.ANDERSON, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 13-SEP-23 3SD7 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3SD7 1 REMARK REVDAT 1 29-JUN-11 3SD7 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,L.PAPAZISI, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.7 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PUTATIVE JRNL TITL 2 PHOSPHATASE FROM CLOSTRIDIUM DIFFICILE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 25299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : 1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.094 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1903 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1318 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2569 ; 1.298 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3246 ; 0.827 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 3.044 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;31.621 ;25.761 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;10.392 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 5.366 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2121 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 372 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1126 ; 1.226 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 458 ; 0.381 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1842 ; 2.049 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 777 ; 3.083 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 727 ; 4.994 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 72.4276 53.6016 5.0911 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0762 REMARK 3 T33: 0.0547 T12: 0.0215 REMARK 3 T13: -0.0184 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 3.4201 L22: 5.7675 REMARK 3 L33: 1.8758 L12: -0.5980 REMARK 3 L13: -0.3983 L23: 1.7148 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: -0.4036 S13: 0.4052 REMARK 3 S21: 0.1156 S22: 0.1318 S23: -0.1982 REMARK 3 S31: -0.0523 S32: 0.1466 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 74.4222 63.7127 5.5677 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.1750 REMARK 3 T33: 0.3623 T12: -0.0196 REMARK 3 T13: -0.0015 T23: -0.0808 REMARK 3 L TENSOR REMARK 3 L11: 3.5849 L22: 5.1772 REMARK 3 L33: 1.5857 L12: -1.0150 REMARK 3 L13: 0.0121 L23: 0.2623 REMARK 3 S TENSOR REMARK 3 S11: -0.1136 S12: -0.1981 S13: 1.0757 REMARK 3 S21: -0.0734 S22: 0.1918 S23: -0.6929 REMARK 3 S31: -0.2096 S32: 0.2010 S33: -0.0782 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 77.7957 42.9889 -1.9106 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: 0.0537 REMARK 3 T33: 0.0358 T12: 0.0264 REMARK 3 T13: 0.0307 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.2322 L22: 3.2060 REMARK 3 L33: 1.7715 L12: -0.5034 REMARK 3 L13: -0.3467 L23: 0.6507 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: -0.0958 S13: -0.0075 REMARK 3 S21: -0.1198 S22: 0.0972 S23: -0.2316 REMARK 3 S31: -0.0705 S32: 0.0462 S33: -0.0546 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3516 43.1252 -3.4063 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0345 REMARK 3 T33: 0.1013 T12: 0.0047 REMARK 3 T13: -0.0248 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 4.4412 L22: 4.5007 REMARK 3 L33: 1.2481 L12: -2.0475 REMARK 3 L13: -0.9552 L23: 1.0401 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.2177 S13: -0.4821 REMARK 3 S21: -0.2118 S22: -0.1181 S23: 0.5847 REMARK 3 S31: -0.0130 S32: -0.1740 S33: 0.1368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26648 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.1MG/ML, 0.5M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS, PH 8.3, SCREEN: JCSG+, D12, 0.04M REMARK 280 POTASSIUM PHOSPHATE, 16% (W/V) PEG 8000, 20% (V/V) GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.16650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 58.16650 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.04000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.16650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 9.02000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.16650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.06000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.16650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.16650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.04000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 58.16650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 27.06000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 58.16650 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 9.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 -78.83 -100.61 REMARK 500 THR A 15 -57.87 -126.03 REMARK 500 LYS A 80 -32.19 -134.70 REMARK 500 GLU A 84 78.33 -103.02 REMARK 500 ASN A 90 -1.54 78.55 REMARK 500 ASP A 138 52.47 38.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 217 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 O REMARK 620 2 ASP A 168 OD1 91.7 REMARK 620 3 HOH A 340 O 154.3 80.3 REMARK 620 4 HOH A 341 O 84.1 85.4 119.2 REMARK 620 5 HOH A 343 O 91.0 168.7 92.7 105.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 221 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP05316 RELATED DB: TARGETDB DBREF 3SD7 A 1 216 UNP Q181K6 Q181K6_CLOD6 1 216 SEQADV 3SD7 MET A -23 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 HIS A -22 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 HIS A -21 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 HIS A -20 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 HIS A -19 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 HIS A -18 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 HIS A -17 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 SER A -16 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 SER A -15 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 GLY A -14 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 VAL A -13 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 ASP A -12 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 LEU A -11 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 GLY A -10 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 THR A -9 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 GLU A -8 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 ASN A -7 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 LEU A -6 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 TYR A -5 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 PHE A -4 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 GLN A -3 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 SER A -2 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 ASN A -1 UNP Q181K6 EXPRESSION TAG SEQADV 3SD7 ALA A 0 UNP Q181K6 EXPRESSION TAG SEQRES 1 A 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 240 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LYS SEQRES 3 A 240 LYS ASN TYR GLU ILE VAL LEU PHE ASP LEU ASP GLY THR SEQRES 4 A 240 LEU THR ASP PRO LYS GLU GLY ILE THR LYS SER ILE GLN SEQRES 5 A 240 TYR SER LEU ASN SER PHE GLY ILE LYS GLU ASP LEU GLU SEQRES 6 A 240 ASN LEU ASP GLN PHE ILE GLY PRO PRO LEU HIS ASP THR SEQRES 7 A 240 PHE LYS GLU TYR TYR LYS PHE GLU ASP LYS LYS ALA LYS SEQRES 8 A 240 GLU ALA VAL GLU LYS TYR ARG GLU TYR PHE ALA ASP LYS SEQRES 9 A 240 GLY ILE PHE GLU ASN LYS ILE TYR GLU ASN MET LYS GLU SEQRES 10 A 240 ILE LEU GLU MET LEU TYR LYS ASN GLY LYS ILE LEU LEU SEQRES 11 A 240 VAL ALA THR SER LYS PRO THR VAL PHE ALA GLU THR ILE SEQRES 12 A 240 LEU ARG TYR PHE ASP ILE ASP ARG TYR PHE LYS TYR ILE SEQRES 13 A 240 ALA GLY SER ASN LEU ASP GLY THR ARG VAL ASN LYS ASN SEQRES 14 A 240 GLU VAL ILE GLN TYR VAL LEU ASP LEU CYS ASN VAL LYS SEQRES 15 A 240 ASP LYS ASP LYS VAL ILE MET VAL GLY ASP ARG LYS TYR SEQRES 16 A 240 ASP ILE ILE GLY ALA LYS LYS ILE GLY ILE ASP SER ILE SEQRES 17 A 240 GLY VAL LEU TYR GLY TYR GLY SER PHE GLU GLU ILE SER SEQRES 18 A 240 GLU SER GLU PRO THR TYR ILE VAL GLU ASN VAL GLU SER SEQRES 19 A 240 ILE LYS ASP ILE LEU LEU HET NA A 217 1 HET CL A 218 1 HET PGE A 219 10 HET GOL A 220 6 HET GOL A 221 6 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA NA 1+ FORMUL 3 CL CL 1- FORMUL 4 PGE C6 H14 O4 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *161(H2 O) HELIX 1 1 PRO A 19 PHE A 34 1 16 HELIX 2 2 ASP A 39 ILE A 47 5 9 HELIX 3 3 PRO A 50 TYR A 58 1 9 HELIX 4 4 GLU A 62 LYS A 80 1 19 HELIX 5 5 GLY A 81 GLU A 84 5 4 HELIX 6 6 ASN A 90 ASN A 101 1 12 HELIX 7 7 THR A 113 PHE A 123 1 11 HELIX 8 8 ILE A 125 PHE A 129 5 5 HELIX 9 9 ASN A 143 CYS A 155 1 13 HELIX 10 10 ASP A 159 ASP A 161 5 3 HELIX 11 11 ARG A 169 GLY A 180 1 12 HELIX 12 12 SER A 192 GLU A 200 1 9 HELIX 13 13 SER A 210 LEU A 216 1 7 SHEET 1 A 6 TYR A 131 SER A 135 0 SHEET 2 A 6 ILE A 104 PRO A 112 1 N THR A 109 O ALA A 133 SHEET 3 A 6 ILE A 7 PHE A 10 1 N VAL A 8 O ILE A 104 SHEET 4 A 6 VAL A 163 GLY A 167 1 O ILE A 164 N LEU A 9 SHEET 5 A 6 ASP A 182 VAL A 186 1 O ILE A 184 N MET A 165 SHEET 6 A 6 TYR A 203 VAL A 205 1 O TYR A 203 N GLY A 185 SHEET 1 B 2 THR A 17 ASP A 18 0 SHEET 2 B 2 LYS A 86 ILE A 87 -1 O LYS A 86 N ASP A 18 LINK O ASP A 13 NA NA A 217 1555 1555 2.21 LINK OD1 ASP A 168 NA NA A 217 1555 1555 2.21 LINK NA NA A 217 O HOH A 340 1555 1555 2.18 LINK NA NA A 217 O HOH A 341 1555 1555 2.43 LINK NA NA A 217 O HOH A 343 1555 1555 2.21 SITE 1 AC1 5 ASP A 13 ASP A 168 HOH A 340 HOH A 341 SITE 2 AC1 5 HOH A 343 SITE 1 AC2 3 ASN A 145 LYS A 178 HOH A 260 SITE 1 AC3 8 TYR A 99 LYS A 100 ASP A 126 ARG A 127 SITE 2 AC3 8 PHE A 129 LYS A 130 HOH A 232 HOH A 282 SITE 1 AC4 6 ASP A 18 LYS A 20 TYR A 88 TYR A 188 SITE 2 AC4 6 GLY A 189 TYR A 190 SITE 1 AC5 5 ASN A 4 ASN A 101 THR A 113 ALA A 133 SITE 2 AC5 5 GLY A 134 CRYST1 116.333 116.333 36.080 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027716 0.00000