HEADER LYASE 09-JUN-11 3SDQ TITLE STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A PROSPECTIVE TITLE 2 TARGET FOR ADVANCED BIOFUELS PRODUCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-BISABOLENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (E)-ALPHA-BISABOLENE SYNTHASE, AGFEABIS; COMPND 5 EC: 4.2.3.38; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ABIES GRANDIS; SOURCE 3 ORGANISM_COMMON: GRAND FIR,LOWLAND FIR,LOWLAND WHITE FIR,SILVER FIR, SOURCE 4 WHITE FIR,YELLOW FIR; SOURCE 5 ORGANISM_TAXID: 46611; SOURCE 6 GENE: AG1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSKB3 KEYWDS LYASE, TERPENE SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA,M.Z.HADI, AUTHOR 2 J.D.KEASLING,P.D.ADAMS REVDAT 3 28-FEB-24 3SDQ 1 REMARK REVDAT 2 28-MAR-12 3SDQ 1 JRNL REVDAT 1 14-DEC-11 3SDQ 0 JRNL AUTH R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA, JRNL AUTH 2 M.Z.HADI,J.D.KEASLING,P.D.ADAMS JRNL TITL STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A JRNL TITL 2 PROSPECTIVE TARGET FOR ADVANCED BIOFUELS PRODUCTION. JRNL REF STRUCTURE V. 19 1876 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22153510 JRNL DOI 10.1016/J.STR.2011.09.013 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_764) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 46301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1821 - 4.6012 1.00 5140 220 0.1532 0.1958 REMARK 3 2 4.6012 - 3.6528 1.00 5035 214 0.1346 0.2024 REMARK 3 3 3.6528 - 3.1913 0.99 4970 211 0.1756 0.2088 REMARK 3 4 3.1913 - 2.8996 0.98 4920 212 0.1949 0.2430 REMARK 3 5 2.8996 - 2.6918 0.97 4806 209 0.2025 0.2957 REMARK 3 6 2.6918 - 2.5331 0.94 4725 196 0.1998 0.2518 REMARK 3 7 2.5331 - 2.4063 0.90 4492 190 0.1963 0.2612 REMARK 3 8 2.4063 - 2.3015 0.81 3979 170 0.1995 0.2728 REMARK 3 9 2.3015 - 2.2129 0.70 3478 147 0.2210 0.2903 REMARK 3 10 2.2129 - 2.1366 0.58 2861 126 0.2326 0.3199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 32.35 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.600 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.55210 REMARK 3 B22 (A**2) : 15.51990 REMARK 3 B33 (A**2) : -5.28700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.72750 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6390 REMARK 3 ANGLE : 1.017 8659 REMARK 3 CHIRALITY : 0.069 954 REMARK 3 PLANARITY : 0.005 1100 REMARK 3 DIHEDRAL : 14.070 2378 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 36:73) REMARK 3 ORIGIN FOR THE GROUP (A): 97.1320 24.9747 10.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.2307 REMARK 3 T33: 0.1644 T12: -0.0254 REMARK 3 T13: 0.0516 T23: -0.0932 REMARK 3 L TENSOR REMARK 3 L11: 2.2668 L22: 2.2095 REMARK 3 L33: 3.2327 L12: 0.4806 REMARK 3 L13: 1.4043 L23: -0.3048 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.3405 S13: -0.1065 REMARK 3 S21: -0.0839 S22: 0.1194 S23: -0.3828 REMARK 3 S31: -0.1047 S32: 0.6988 S33: 0.0137 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 74:195) REMARK 3 ORIGIN FOR THE GROUP (A): 58.0715 3.5363 9.3168 REMARK 3 T TENSOR REMARK 3 T11: 0.4930 T22: 0.1742 REMARK 3 T33: 0.2574 T12: -0.1906 REMARK 3 T13: 0.0433 T23: -0.1366 REMARK 3 L TENSOR REMARK 3 L11: 3.1073 L22: 1.4983 REMARK 3 L33: 2.0842 L12: -0.1274 REMARK 3 L13: 0.6840 L23: 0.1347 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.2645 S13: -0.5497 REMARK 3 S21: -0.0706 S22: -0.0342 S23: 0.1462 REMARK 3 S31: 0.8102 S32: -0.3419 S33: -0.0150 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 196:223) REMARK 3 ORIGIN FOR THE GROUP (A): 51.3012 2.6561 26.8701 REMARK 3 T TENSOR REMARK 3 T11: 0.5518 T22: 0.5184 REMARK 3 T33: 0.3350 T12: -0.2590 REMARK 3 T13: 0.0607 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 4.2711 L22: 4.9311 REMARK 3 L33: 1.8820 L12: -3.6587 REMARK 3 L13: -0.6055 L23: -0.7340 REMARK 3 S TENSOR REMARK 3 S11: -0.3984 S12: -0.5506 S13: -0.4804 REMARK 3 S21: 0.4747 S22: 0.4469 S23: 0.5196 REMARK 3 S31: 0.5874 S32: -0.1809 S33: -0.0252 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 224:293) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9449 19.6580 13.9927 REMARK 3 T TENSOR REMARK 3 T11: 0.1887 T22: 0.3055 REMARK 3 T33: 0.1747 T12: -0.0706 REMARK 3 T13: 0.0024 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 5.5351 L22: 2.2304 REMARK 3 L33: 4.2691 L12: 0.1218 REMARK 3 L13: -1.3474 L23: -0.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.1198 S12: 0.0053 S13: 0.1805 REMARK 3 S21: 0.0382 S22: -0.1095 S23: 0.3092 REMARK 3 S31: 0.1281 S32: -0.6870 S33: -0.0246 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 294:382) REMARK 3 ORIGIN FOR THE GROUP (A): 71.8658 30.0142 23.0224 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.1342 REMARK 3 T33: 0.2295 T12: 0.0076 REMARK 3 T13: 0.0466 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 4.0860 L22: 2.0538 REMARK 3 L33: 2.8596 L12: 0.3298 REMARK 3 L13: -0.0801 L23: 0.7205 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.3582 S13: 0.4053 REMARK 3 S21: 0.0571 S22: -0.0195 S23: 0.3169 REMARK 3 S31: 0.0061 S32: -0.1891 S33: 0.0076 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 383:445) REMARK 3 ORIGIN FOR THE GROUP (A): 73.6521 16.2410 33.2659 REMARK 3 T TENSOR REMARK 3 T11: 0.2914 T22: 0.2638 REMARK 3 T33: 0.1585 T12: -0.0651 REMARK 3 T13: -0.0013 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 2.5018 L22: 5.0567 REMARK 3 L33: 2.7878 L12: 0.9633 REMARK 3 L13: 0.1157 L23: 1.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.1815 S12: -0.5638 S13: -0.1124 REMARK 3 S21: 0.6250 S22: -0.2369 S23: 0.1134 REMARK 3 S31: 0.5992 S32: -0.0499 S33: 0.0831 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 446:580) REMARK 3 ORIGIN FOR THE GROUP (A): 99.9890 25.9841 28.1617 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.3464 REMARK 3 T33: 0.1869 T12: -0.0064 REMARK 3 T13: 0.0086 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.1400 L22: 0.8728 REMARK 3 L33: 0.8095 L12: 0.8973 REMARK 3 L13: 0.8547 L23: 0.3640 REMARK 3 S TENSOR REMARK 3 S11: 0.1705 S12: -0.2709 S13: -0.2273 REMARK 3 S21: 0.1156 S22: -0.0878 S23: -0.2149 REMARK 3 S31: 0.0971 S32: 0.2597 S33: -0.0995 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 581:702) REMARK 3 ORIGIN FOR THE GROUP (A): 107.4776 44.8045 41.6089 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.6396 REMARK 3 T33: 0.2528 T12: -0.1757 REMARK 3 T13: 0.0123 T23: -0.1357 REMARK 3 L TENSOR REMARK 3 L11: 1.9330 L22: 0.2456 REMARK 3 L33: 1.1995 L12: -0.2358 REMARK 3 L13: 0.2736 L23: -0.2019 REMARK 3 S TENSOR REMARK 3 S11: 0.0803 S12: -0.6161 S13: 0.3304 REMARK 3 S21: 0.2544 S22: -0.0926 S23: -0.0342 REMARK 3 S31: -0.2204 S32: 0.2927 S33: 0.0808 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 703:770) REMARK 3 ORIGIN FOR THE GROUP (A): 90.3128 32.4488 50.0186 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.5508 REMARK 3 T33: 0.2559 T12: -0.2054 REMARK 3 T13: 0.1391 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.9450 L22: 1.3200 REMARK 3 L33: 3.2405 L12: 0.0462 REMARK 3 L13: -1.2302 L23: 0.3454 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.9066 S13: -0.4719 REMARK 3 S21: 0.5551 S22: -0.1610 S23: -0.0441 REMARK 3 S31: 0.5529 S32: 0.1708 S33: 0.2311 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 771:817) REMARK 3 ORIGIN FOR THE GROUP (A): 97.1545 26.0027 30.6946 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.4596 REMARK 3 T33: 0.3434 T12: -0.0455 REMARK 3 T13: -0.0593 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 3.3573 L22: 4.2067 REMARK 3 L33: 3.3139 L12: -0.7688 REMARK 3 L13: -1.0305 L23: 0.9898 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: -0.6159 S13: -0.4381 REMARK 3 S21: 0.4239 S22: -0.1273 S23: -0.1211 REMARK 3 S31: 0.3970 S32: 0.3704 S33: 0.0496 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49035 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51500 REMARK 200 FOR SHELL : 1.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MRSAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW, PHASER, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 100 MM NACL, AND 23% REMARK 280 (W/V) PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.61000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.15550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.61000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.15550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1051 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 CYS A 15 REMARK 465 ASP A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 ILE A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 PRO A 30 REMARK 465 HIS A 31 REMARK 465 PRO A 32 REMARK 465 ASN A 33 REMARK 465 VAL A 34 REMARK 465 ASN A 377 REMARK 465 GLY A 378 REMARK 465 LYS A 719 REMARK 465 ALA A 720 REMARK 465 GLU A 721 REMARK 465 LYS A 722 REMARK 465 ALA A 723 REMARK 465 ARG A 724 REMARK 465 GLY A 725 REMARK 465 GLU A 726 REMARK 465 LEU A 727 REMARK 465 ASP A 792 REMARK 465 GLY A 793 REMARK 465 ASP A 794 REMARK 465 GLY A 795 REMARK 465 PHE A 796 REMARK 465 GLY A 797 REMARK 465 VAL A 798 REMARK 465 SER A 799 REMARK 465 LYS A 800 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 32.46 -70.65 REMARK 500 VAL A 40 -47.51 -139.99 REMARK 500 SER A 45 86.00 -18.98 REMARK 500 THR A 170 -1.42 -58.25 REMARK 500 ASP A 173 -173.55 72.53 REMARK 500 SER A 233 41.44 -140.79 REMARK 500 ASP A 375 -116.34 -116.08 REMARK 500 ILE A 381 -88.65 -113.43 REMARK 500 CYS A 382 -153.76 50.13 REMARK 500 LEU A 403 33.71 -94.54 REMARK 500 ALA A 477 -133.66 -140.42 REMARK 500 THR A 571 -78.90 -124.95 REMARK 500 TRP A 588 59.29 -64.32 REMARK 500 LEU A 626 -2.09 -142.10 REMARK 500 TYR A 695 96.68 -166.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 820 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SAE RELATED DB: PDB REMARK 900 FARNESYL THIOPHOSPHATE BOUND REMARK 900 RELATED ID: 3SDR RELATED DB: PDB REMARK 900 RELATED ID: 3SDT RELATED DB: PDB REMARK 900 RELATED ID: 3SDV RELATED DB: PDB REMARK 900 RELATED ID: 3SDU RELATED DB: PDB DBREF 3SDQ A 1 817 UNP O81086 TPSD1_ABIGR 1 817 SEQRES 1 A 817 MET ALA GLY VAL SER ALA VAL SER LYS VAL SER SER LEU SEQRES 2 A 817 VAL CYS ASP LEU SER SER THR SER GLY LEU ILE ARG ARG SEQRES 3 A 817 THR ALA ASN PRO HIS PRO ASN VAL TRP GLY TYR ASP LEU SEQRES 4 A 817 VAL HIS SER LEU LYS SER PRO TYR ILE ASP SER SER TYR SEQRES 5 A 817 ARG GLU ARG ALA GLU VAL LEU VAL SER GLU ILE LYS ALA SEQRES 6 A 817 MET LEU ASN PRO ALA ILE THR GLY ASP GLY GLU SER MET SEQRES 7 A 817 ILE THR PRO SER ALA TYR ASP THR ALA TRP VAL ALA ARG SEQRES 8 A 817 VAL PRO ALA ILE ASP GLY SER ALA ARG PRO GLN PHE PRO SEQRES 9 A 817 GLN THR VAL ASP TRP ILE LEU LYS ASN GLN LEU LYS ASP SEQRES 10 A 817 GLY SER TRP GLY ILE GLN SER HIS PHE LEU LEU SER ASP SEQRES 11 A 817 ARG LEU LEU ALA THR LEU SER CYS VAL LEU VAL LEU LEU SEQRES 12 A 817 LYS TRP ASN VAL GLY ASP LEU GLN VAL GLU GLN GLY ILE SEQRES 13 A 817 GLU PHE ILE LYS SER ASN LEU GLU LEU VAL LYS ASP GLU SEQRES 14 A 817 THR ASP GLN ASP SER LEU VAL THR ASP PHE GLU ILE ILE SEQRES 15 A 817 PHE PRO SER LEU LEU ARG GLU ALA GLN SER LEU ARG LEU SEQRES 16 A 817 GLY LEU PRO TYR ASP LEU PRO TYR ILE HIS LEU LEU GLN SEQRES 17 A 817 THR LYS ARG GLN GLU ARG LEU ALA LYS LEU SER ARG GLU SEQRES 18 A 817 GLU ILE TYR ALA VAL PRO SER PRO LEU LEU TYR SER LEU SEQRES 19 A 817 GLU GLY ILE GLN ASP ILE VAL GLU TRP GLU ARG ILE MET SEQRES 20 A 817 GLU VAL GLN SER GLN ASP GLY SER PHE LEU SER SER PRO SEQRES 21 A 817 ALA SER THR ALA CYS VAL PHE MET HIS THR GLY ASP ALA SEQRES 22 A 817 LYS CYS LEU GLU PHE LEU ASN SER VAL MET ILE LYS PHE SEQRES 23 A 817 GLY ASN PHE VAL PRO CYS LEU TYR PRO VAL ASP LEU LEU SEQRES 24 A 817 GLU ARG LEU LEU ILE VAL ASP ASN ILE VAL ARG LEU GLY SEQRES 25 A 817 ILE TYR ARG HIS PHE GLU LYS GLU ILE LYS GLU ALA LEU SEQRES 26 A 817 ASP TYR VAL TYR ARG HIS TRP ASN GLU ARG GLY ILE GLY SEQRES 27 A 817 TRP GLY ARG LEU ASN PRO ILE ALA ASP LEU GLU THR THR SEQRES 28 A 817 ALA LEU GLY PHE ARG LEU LEU ARG LEU HIS ARG TYR ASN SEQRES 29 A 817 VAL SER PRO ALA ILE PHE ASP ASN PHE LYS ASP ALA ASN SEQRES 30 A 817 GLY LYS PHE ILE CYS SER THR GLY GLN PHE ASN LYS ASP SEQRES 31 A 817 VAL ALA SER MET LEU ASN LEU TYR ARG ALA SER GLN LEU SEQRES 32 A 817 ALA PHE PRO GLY GLU ASN ILE LEU ASP GLU ALA LYS SER SEQRES 33 A 817 PHE ALA THR LYS TYR LEU ARG GLU ALA LEU GLU LYS SER SEQRES 34 A 817 GLU THR SER SER ALA TRP ASN ASN LYS GLN ASN LEU SER SEQRES 35 A 817 GLN GLU ILE LYS TYR ALA LEU LYS THR SER TRP HIS ALA SEQRES 36 A 817 SER VAL PRO ARG VAL GLU ALA LYS ARG TYR CYS GLN VAL SEQRES 37 A 817 TYR ARG PRO ASP TYR ALA ARG ILE ALA LYS CYS VAL TYR SEQRES 38 A 817 LYS LEU PRO TYR VAL ASN ASN GLU LYS PHE LEU GLU LEU SEQRES 39 A 817 GLY LYS LEU ASP PHE ASN ILE ILE GLN SER ILE HIS GLN SEQRES 40 A 817 GLU GLU MET LYS ASN VAL THR SER TRP PHE ARG ASP SER SEQRES 41 A 817 GLY LEU PRO LEU PHE THR PHE ALA ARG GLU ARG PRO LEU SEQRES 42 A 817 GLU PHE TYR PHE LEU VAL ALA ALA GLY THR TYR GLU PRO SEQRES 43 A 817 GLN TYR ALA LYS CYS ARG PHE LEU PHE THR LYS VAL ALA SEQRES 44 A 817 CYS LEU GLN THR VAL LEU ASP ASP MET TYR ASP THR TYR SEQRES 45 A 817 GLY THR LEU ASP GLU LEU LYS LEU PHE THR GLU ALA VAL SEQRES 46 A 817 ARG ARG TRP ASP LEU SER PHE THR GLU ASN LEU PRO ASP SEQRES 47 A 817 TYR MET LYS LEU CYS TYR GLN ILE TYR TYR ASP ILE VAL SEQRES 48 A 817 HIS GLU VAL ALA TRP GLU ALA GLU LYS GLU GLN GLY ARG SEQRES 49 A 817 GLU LEU VAL SER PHE PHE ARG LYS GLY TRP GLU ASP TYR SEQRES 50 A 817 LEU LEU GLY TYR TYR GLU GLU ALA GLU TRP LEU ALA ALA SEQRES 51 A 817 GLU TYR VAL PRO THR LEU ASP GLU TYR ILE LYS ASN GLY SEQRES 52 A 817 ILE THR SER ILE GLY GLN ARG ILE LEU LEU LEU SER GLY SEQRES 53 A 817 VAL LEU ILE MET ASP GLY GLN LEU LEU SER GLN GLU ALA SEQRES 54 A 817 LEU GLU LYS VAL ASP TYR PRO GLY ARG ARG VAL LEU THR SEQRES 55 A 817 GLU LEU ASN SER LEU ILE SER ARG LEU ALA ASP ASP THR SEQRES 56 A 817 LYS THR TYR LYS ALA GLU LYS ALA ARG GLY GLU LEU ALA SEQRES 57 A 817 SER SER ILE GLU CYS TYR MET LYS ASP HIS PRO GLU CYS SEQRES 58 A 817 THR GLU GLU GLU ALA LEU ASP HIS ILE TYR SER ILE LEU SEQRES 59 A 817 GLU PRO ALA VAL LYS GLU LEU THR ARG GLU PHE LEU LYS SEQRES 60 A 817 PRO ASP ASP VAL PRO PHE ALA CYS LYS LYS MET LEU PHE SEQRES 61 A 817 GLU GLU THR ARG VAL THR MET VAL ILE PHE LYS ASP GLY SEQRES 62 A 817 ASP GLY PHE GLY VAL SER LYS LEU GLU VAL LYS ASP HIS SEQRES 63 A 817 ILE LYS GLU CYS LEU ILE GLU PRO LEU PRO LEU HET CL A 818 1 HET GOL A 819 6 HET GOL A 820 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL CL 1- FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *261(H2 O) HELIX 1 1 TYR A 37 SER A 42 1 6 HELIX 2 2 SER A 45 ILE A 48 5 4 HELIX 3 3 ASP A 49 THR A 72 1 24 HELIX 4 4 SER A 82 ALA A 90 1 9 HELIX 5 5 PHE A 103 ASN A 113 1 11 HELIX 6 6 LEU A 127 TRP A 145 1 19 HELIX 7 7 GLY A 148 GLU A 164 1 17 HELIX 8 8 ASP A 168 GLN A 172 5 5 HELIX 9 9 ASP A 178 LEU A 193 1 16 HELIX 10 10 LEU A 201 LYS A 217 1 17 HELIX 11 11 SER A 219 VAL A 226 1 8 HELIX 12 12 SER A 228 ILE A 237 5 10 HELIX 13 13 GLU A 242 GLN A 250 5 9 HELIX 14 14 SER A 259 GLY A 271 1 13 HELIX 15 15 ASP A 272 GLY A 287 1 16 HELIX 16 16 VAL A 296 GLY A 312 1 17 HELIX 17 17 ILE A 313 HIS A 316 5 4 HELIX 18 18 PHE A 317 TRP A 332 1 16 HELIX 19 19 ASP A 347 HIS A 361 1 15 HELIX 20 20 SER A 366 LYS A 374 5 9 HELIX 21 21 GLN A 386 GLN A 402 1 17 HELIX 22 22 GLU A 408 LEU A 426 1 19 HELIX 23 23 GLU A 427 LYS A 428 5 2 HELIX 24 24 SER A 429 SER A 432 5 4 HELIX 25 25 SER A 433 GLN A 439 1 7 HELIX 26 26 ASN A 440 THR A 451 1 12 HELIX 27 27 VAL A 457 TYR A 469 1 13 HELIX 28 28 ASN A 488 SER A 520 1 33 HELIX 29 29 GLY A 521 PHE A 525 5 5 HELIX 30 30 ARG A 531 ALA A 541 1 11 HELIX 31 31 GLU A 545 GLN A 547 5 3 HELIX 32 32 TYR A 548 THR A 571 1 24 HELIX 33 33 THR A 574 ARG A 587 1 14 HELIX 34 34 ASP A 589 LEU A 596 5 8 HELIX 35 35 PRO A 597 GLY A 623 1 27 HELIX 36 36 LEU A 626 ALA A 650 1 25 HELIX 37 37 THR A 655 ILE A 667 1 13 HELIX 38 38 GLY A 668 LEU A 678 1 11 HELIX 39 39 SER A 686 LYS A 692 1 7 HELIX 40 40 VAL A 700 TYR A 718 1 19 HELIX 41 41 SER A 729 HIS A 738 1 10 HELIX 42 42 THR A 742 LYS A 767 1 26 HELIX 43 43 PRO A 772 PHE A 790 1 19 HELIX 44 44 LEU A 801 ILE A 812 1 12 SHEET 1 A 2 ARG A 475 ILE A 476 0 SHEET 2 A 2 VAL A 480 TYR A 481 -1 O TYR A 481 N ARG A 475 CISPEP 1 TYR A 294 PRO A 295 0 -4.28 SITE 1 AC1 6 HIS A 125 GLN A 439 ARG A 470 TYR A 473 SITE 2 AC1 6 ALA A 474 HOH A 912 SITE 1 AC2 2 TYR A 314 HIS A 361 SITE 1 AC3 7 GLU A 349 ASN A 388 TYR A 473 ARG A 475 SITE 2 AC3 7 ILE A 476 HOH A 967 HOH A1050 CRYST1 157.220 54.311 126.919 90.00 119.43 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006361 0.000000 0.003588 0.00000 SCALE2 0.000000 0.018412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009046 0.00000