HEADER LYASE 09-JUN-11 3SDR TITLE STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A PROSPECTIVE TITLE 2 TARGET FOR ADVANCED BIOFUELS PRODUCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-BISABOLENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (E)-ALPHA-BISABOLENE SYNTHASE, AGFEABIS; COMPND 5 EC: 4.2.3.38; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ABIES GRANDIS; SOURCE 3 ORGANISM_COMMON: GRAND FIR,LOWLAND FIR,LOWLAND WHITE FIR,SILVER FIR, SOURCE 4 WHITE FIR,YELLOW FIR; SOURCE 5 ORGANISM_TAXID: 46611; SOURCE 6 GENE: AG1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSKB33 KEYWDS LYASE, TERPENE SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA,M.Z.HADI, AUTHOR 2 J.D.KEASLING,P.D.ADAMS REVDAT 4 28-FEB-24 3SDR 1 REMARK LINK REVDAT 3 22-AUG-12 3SDR 1 REMARK REVDAT 2 28-MAR-12 3SDR 1 JRNL REVDAT 1 14-DEC-11 3SDR 0 JRNL AUTH R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA, JRNL AUTH 2 M.Z.HADI,J.D.KEASLING,P.D.ADAMS JRNL TITL STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A JRNL TITL 2 PROSPECTIVE TARGET FOR ADVANCED BIOFUELS PRODUCTION. JRNL REF STRUCTURE V. 19 1876 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22153510 JRNL DOI 10.1016/J.STR.2011.09.013 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_778) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 79277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.520 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3007 - 4.4554 1.00 5751 148 0.1602 0.1999 REMARK 3 2 4.4554 - 3.5372 1.00 5612 146 0.1559 0.1688 REMARK 3 3 3.5372 - 3.0903 1.00 5588 144 0.1820 0.2162 REMARK 3 4 3.0903 - 2.8079 1.00 5561 144 0.1945 0.2012 REMARK 3 5 2.8079 - 2.6067 1.00 5530 143 0.1811 0.2352 REMARK 3 6 2.6067 - 2.4530 1.00 5554 143 0.1762 0.2065 REMARK 3 7 2.4530 - 2.3302 1.00 5564 144 0.1813 0.2261 REMARK 3 8 2.3302 - 2.2287 1.00 5505 142 0.1882 0.2365 REMARK 3 9 2.2287 - 2.1430 1.00 5537 144 0.1848 0.2465 REMARK 3 10 2.1430 - 2.0690 1.00 5480 142 0.1892 0.2326 REMARK 3 11 2.0690 - 2.0043 1.00 5517 142 0.1989 0.2282 REMARK 3 12 2.0043 - 1.9470 1.00 5486 143 0.2134 0.2696 REMARK 3 13 1.9470 - 1.8958 0.99 5500 143 0.2721 0.3517 REMARK 3 14 1.8958 - 1.8600 0.93 5093 131 0.2922 0.3054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 45.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.38860 REMARK 3 B22 (A**2) : 12.17490 REMARK 3 B33 (A**2) : -9.78630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.77860 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6508 REMARK 3 ANGLE : 0.944 8847 REMARK 3 CHIRALITY : 0.067 968 REMARK 3 PLANARITY : 0.004 1120 REMARK 3 DIHEDRAL : 12.728 2437 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 36:73) REMARK 3 ORIGIN FOR THE GROUP (A): 96.5462 25.2532 10.6651 REMARK 3 T TENSOR REMARK 3 T11: 0.2859 T22: 0.1947 REMARK 3 T33: 0.2395 T12: -0.0232 REMARK 3 T13: 0.0347 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 7.6070 L22: 1.2393 REMARK 3 L33: 4.5928 L12: 0.3461 REMARK 3 L13: 4.4062 L23: -0.1037 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: 0.6142 S13: -0.2640 REMARK 3 S21: -0.0939 S22: 0.0926 S23: -0.1704 REMARK 3 S31: -0.0162 S32: 0.5716 S33: 0.0083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 74:195) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6332 3.7393 9.2907 REMARK 3 T TENSOR REMARK 3 T11: 0.3751 T22: 0.0924 REMARK 3 T33: 0.2209 T12: -0.1071 REMARK 3 T13: -0.0148 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 2.6143 L22: 1.5549 REMARK 3 L33: 2.1978 L12: -0.3912 REMARK 3 L13: 0.4350 L23: -0.0539 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.2249 S13: -0.3168 REMARK 3 S21: -0.1210 S22: -0.0094 S23: 0.0574 REMARK 3 S31: 0.6197 S32: -0.2232 S33: 0.0078 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 196:223) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9391 3.0915 26.9767 REMARK 3 T TENSOR REMARK 3 T11: 0.3319 T22: 0.3208 REMARK 3 T33: 0.2346 T12: -0.1291 REMARK 3 T13: 0.0070 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: 4.4373 L22: 4.0282 REMARK 3 L33: 1.5854 L12: -3.6120 REMARK 3 L13: -0.7476 L23: -0.6551 REMARK 3 S TENSOR REMARK 3 S11: -0.3835 S12: -0.6249 S13: -0.5088 REMARK 3 S21: 0.4645 S22: 0.4618 S23: 0.4308 REMARK 3 S31: 0.3340 S32: -0.0055 S33: -0.0713 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 224:293) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5465 19.8415 13.9086 REMARK 3 T TENSOR REMARK 3 T11: 0.2085 T22: 0.1977 REMARK 3 T33: 0.2216 T12: -0.0476 REMARK 3 T13: -0.0223 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 4.5374 L22: 1.1188 REMARK 3 L33: 4.7730 L12: 0.2572 REMARK 3 L13: -1.6200 L23: 0.2218 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: 0.0499 S13: 0.1548 REMARK 3 S21: -0.0679 S22: -0.0376 S23: 0.1545 REMARK 3 S31: 0.1374 S32: -0.4852 S33: -0.0090 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 294:382) REMARK 3 ORIGIN FOR THE GROUP (A): 71.3605 30.1322 22.9616 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.1236 REMARK 3 T33: 0.2293 T12: 0.0259 REMARK 3 T13: 0.0004 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 4.5068 L22: 1.7448 REMARK 3 L33: 2.3085 L12: 0.5174 REMARK 3 L13: -0.2816 L23: 0.4948 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.3135 S13: 0.3240 REMARK 3 S21: 0.0067 S22: -0.0058 S23: 0.3030 REMARK 3 S31: -0.0306 S32: -0.2029 S33: 0.0529 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 383:445) REMARK 3 ORIGIN FOR THE GROUP (A): 73.0967 16.6607 33.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.2417 T22: 0.2265 REMARK 3 T33: 0.1597 T12: -0.0629 REMARK 3 T13: 0.0063 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.0675 L22: 7.0203 REMARK 3 L33: 2.6617 L12: 0.5160 REMARK 3 L13: 0.0382 L23: 2.0659 REMARK 3 S TENSOR REMARK 3 S11: 0.1667 S12: -0.4300 S13: -0.0491 REMARK 3 S21: 0.6272 S22: -0.2020 S23: 0.1747 REMARK 3 S31: 0.3704 S32: -0.0769 S33: 0.0644 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 446:580) REMARK 3 ORIGIN FOR THE GROUP (A): 99.5013 26.3811 28.2417 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.2376 REMARK 3 T33: 0.1811 T12: 0.0013 REMARK 3 T13: 0.0099 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.8769 L22: 0.5711 REMARK 3 L33: 0.5296 L12: 0.6773 REMARK 3 L13: 0.4036 L23: 0.1421 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: -0.2955 S13: -0.1471 REMARK 3 S21: 0.0442 S22: -0.0706 S23: -0.1073 REMARK 3 S31: 0.0573 S32: 0.1417 S33: -0.0253 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 581:702) REMARK 3 ORIGIN FOR THE GROUP (A): 106.8825 45.2224 41.5049 REMARK 3 T TENSOR REMARK 3 T11: 0.2046 T22: 0.4851 REMARK 3 T33: 0.2278 T12: -0.0899 REMARK 3 T13: -0.0045 T23: -0.1323 REMARK 3 L TENSOR REMARK 3 L11: 1.7269 L22: 0.7056 REMARK 3 L33: 1.2603 L12: -0.4646 REMARK 3 L13: -0.0147 L23: 0.0836 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.6977 S13: 0.4190 REMARK 3 S21: 0.1808 S22: -0.0032 S23: -0.0700 REMARK 3 S31: -0.1620 S32: 0.2396 S33: 0.0620 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 703:770) REMARK 3 ORIGIN FOR THE GROUP (A): 90.4034 32.4672 50.0875 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.5266 REMARK 3 T33: 0.1432 T12: -0.1236 REMARK 3 T13: 0.1016 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.3392 L22: 0.6962 REMARK 3 L33: 5.4174 L12: -0.1742 REMARK 3 L13: -0.5622 L23: 0.0137 REMARK 3 S TENSOR REMARK 3 S11: 0.1672 S12: -1.1361 S13: -0.6348 REMARK 3 S21: 0.2053 S22: -0.1289 S23: 0.1157 REMARK 3 S31: 0.4807 S32: -0.1485 S33: 0.1114 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 771:817) REMARK 3 ORIGIN FOR THE GROUP (A): 96.7499 25.1526 33.3522 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.3558 REMARK 3 T33: 0.3113 T12: -0.0457 REMARK 3 T13: -0.0230 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 3.2753 L22: 3.1813 REMARK 3 L33: 5.1360 L12: -0.9750 REMARK 3 L13: -0.6080 L23: 1.2817 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: -0.6118 S13: -0.4691 REMARK 3 S21: 0.6925 S22: 0.0216 S23: -0.0851 REMARK 3 S31: 0.6464 S32: 0.1835 S33: 0.1296 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.83300 REMARK 200 FOR SHELL : 1.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MRSAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW, PHASER, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 100 MM NACL, AND 23% REMARK 280 (W/V) PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.22900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.23950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.22900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.23950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1108 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 CYS A 15 REMARK 465 ASP A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 ILE A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 PRO A 30 REMARK 465 HIS A 31 REMARK 465 PRO A 32 REMARK 465 ASN A 33 REMARK 465 VAL A 34 REMARK 465 ASN A 377 REMARK 465 GLY A 378 REMARK 465 GLU A 721 REMARK 465 LYS A 722 REMARK 465 ALA A 723 REMARK 465 ARG A 724 REMARK 465 GLY A 725 REMARK 465 GLU A 726 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 173 -176.17 74.26 REMARK 500 SER A 233 38.56 -140.19 REMARK 500 PHE A 380 161.40 -48.61 REMARK 500 ILE A 381 -5.78 -145.66 REMARK 500 SER A 383 45.67 163.73 REMARK 500 ALA A 477 -127.72 -138.98 REMARK 500 ARG A 531 42.56 -141.55 REMARK 500 THR A 571 -66.91 -142.93 REMARK 500 LEU A 626 -1.99 -140.56 REMARK 500 TYR A 695 92.86 -172.95 REMARK 500 THR A 717 -122.37 -111.48 REMARK 500 TYR A 718 -38.15 61.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 819 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 566 OD2 REMARK 620 2 ASP A 570 OD2 94.1 REMARK 620 3 210 A 822 O9 92.4 79.5 REMARK 620 4 210 A 822 O5 89.0 175.4 103.7 REMARK 620 5 HOH A1320 O 92.3 90.7 169.5 85.8 REMARK 620 6 HOH A1321 O 177.0 88.0 86.0 89.0 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 821 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 566 OD1 REMARK 620 2 ASP A 570 OD2 90.3 REMARK 620 3 210 A 822 O9 94.4 79.4 REMARK 620 4 HOH A1322 O 176.0 93.4 87.7 REMARK 620 5 HOH A1323 O 84.3 103.6 176.7 93.4 REMARK 620 6 HOH A1324 O 87.7 164.3 85.3 89.1 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 820 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 210 A 822 O2 REMARK 620 2 210 A 822 O10 68.8 REMARK 620 3 HOH A1317 O 143.0 74.7 REMARK 620 4 HOH A1318 O 80.6 73.0 94.8 REMARK 620 5 HOH A1319 O 80.3 148.3 136.7 96.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 821 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 210 A 822 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SAE RELATED DB: PDB REMARK 900 RELATED ID: 3SDQ RELATED DB: PDB REMARK 900 RELATED ID: 3SDT RELATED DB: PDB REMARK 900 RELATED ID: 3SDV RELATED DB: PDB REMARK 900 RELATED ID: 3SDU RELATED DB: PDB DBREF 3SDR A 1 817 UNP O81086 TPSD1_ABIGR 1 817 SEQRES 1 A 817 MET ALA GLY VAL SER ALA VAL SER LYS VAL SER SER LEU SEQRES 2 A 817 VAL CYS ASP LEU SER SER THR SER GLY LEU ILE ARG ARG SEQRES 3 A 817 THR ALA ASN PRO HIS PRO ASN VAL TRP GLY TYR ASP LEU SEQRES 4 A 817 VAL HIS SER LEU LYS SER PRO TYR ILE ASP SER SER TYR SEQRES 5 A 817 ARG GLU ARG ALA GLU VAL LEU VAL SER GLU ILE LYS ALA SEQRES 6 A 817 MET LEU ASN PRO ALA ILE THR GLY ASP GLY GLU SER MET SEQRES 7 A 817 ILE THR PRO SER ALA TYR ASP THR ALA TRP VAL ALA ARG SEQRES 8 A 817 VAL PRO ALA ILE ASP GLY SER ALA ARG PRO GLN PHE PRO SEQRES 9 A 817 GLN THR VAL ASP TRP ILE LEU LYS ASN GLN LEU LYS ASP SEQRES 10 A 817 GLY SER TRP GLY ILE GLN SER HIS PHE LEU LEU SER ASP SEQRES 11 A 817 ARG LEU LEU ALA THR LEU SER CYS VAL LEU VAL LEU LEU SEQRES 12 A 817 LYS TRP ASN VAL GLY ASP LEU GLN VAL GLU GLN GLY ILE SEQRES 13 A 817 GLU PHE ILE LYS SER ASN LEU GLU LEU VAL LYS ASP GLU SEQRES 14 A 817 THR ASP GLN ASP SER LEU VAL THR ASP PHE GLU ILE ILE SEQRES 15 A 817 PHE PRO SER LEU LEU ARG GLU ALA GLN SER LEU ARG LEU SEQRES 16 A 817 GLY LEU PRO TYR ASP LEU PRO TYR ILE HIS LEU LEU GLN SEQRES 17 A 817 THR LYS ARG GLN GLU ARG LEU ALA LYS LEU SER ARG GLU SEQRES 18 A 817 GLU ILE TYR ALA VAL PRO SER PRO LEU LEU TYR SER LEU SEQRES 19 A 817 GLU GLY ILE GLN ASP ILE VAL GLU TRP GLU ARG ILE MET SEQRES 20 A 817 GLU VAL GLN SER GLN ASP GLY SER PHE LEU SER SER PRO SEQRES 21 A 817 ALA SER THR ALA CYS VAL PHE MET HIS THR GLY ASP ALA SEQRES 22 A 817 LYS CYS LEU GLU PHE LEU ASN SER VAL MET ILE LYS PHE SEQRES 23 A 817 GLY ASN PHE VAL PRO CYS LEU TYR PRO VAL ASP LEU LEU SEQRES 24 A 817 GLU ARG LEU LEU ILE VAL ASP ASN ILE VAL ARG LEU GLY SEQRES 25 A 817 ILE TYR ARG HIS PHE GLU LYS GLU ILE LYS GLU ALA LEU SEQRES 26 A 817 ASP TYR VAL TYR ARG HIS TRP ASN GLU ARG GLY ILE GLY SEQRES 27 A 817 TRP GLY ARG LEU ASN PRO ILE ALA ASP LEU GLU THR THR SEQRES 28 A 817 ALA LEU GLY PHE ARG LEU LEU ARG LEU HIS ARG TYR ASN SEQRES 29 A 817 VAL SER PRO ALA ILE PHE ASP ASN PHE LYS ASP ALA ASN SEQRES 30 A 817 GLY LYS PHE ILE CYS SER THR GLY GLN PHE ASN LYS ASP SEQRES 31 A 817 VAL ALA SER MET LEU ASN LEU TYR ARG ALA SER GLN LEU SEQRES 32 A 817 ALA PHE PRO GLY GLU ASN ILE LEU ASP GLU ALA LYS SER SEQRES 33 A 817 PHE ALA THR LYS TYR LEU ARG GLU ALA LEU GLU LYS SER SEQRES 34 A 817 GLU THR SER SER ALA TRP ASN ASN LYS GLN ASN LEU SER SEQRES 35 A 817 GLN GLU ILE LYS TYR ALA LEU LYS THR SER TRP HIS ALA SEQRES 36 A 817 SER VAL PRO ARG VAL GLU ALA LYS ARG TYR CYS GLN VAL SEQRES 37 A 817 TYR ARG PRO ASP TYR ALA ARG ILE ALA LYS CYS VAL TYR SEQRES 38 A 817 LYS LEU PRO TYR VAL ASN ASN GLU LYS PHE LEU GLU LEU SEQRES 39 A 817 GLY LYS LEU ASP PHE ASN ILE ILE GLN SER ILE HIS GLN SEQRES 40 A 817 GLU GLU MET LYS ASN VAL THR SER TRP PHE ARG ASP SER SEQRES 41 A 817 GLY LEU PRO LEU PHE THR PHE ALA ARG GLU ARG PRO LEU SEQRES 42 A 817 GLU PHE TYR PHE LEU VAL ALA ALA GLY THR TYR GLU PRO SEQRES 43 A 817 GLN TYR ALA LYS CYS ARG PHE LEU PHE THR LYS VAL ALA SEQRES 44 A 817 CYS LEU GLN THR VAL LEU ASP ASP MET TYR ASP THR TYR SEQRES 45 A 817 GLY THR LEU ASP GLU LEU LYS LEU PHE THR GLU ALA VAL SEQRES 46 A 817 ARG ARG TRP ASP LEU SER PHE THR GLU ASN LEU PRO ASP SEQRES 47 A 817 TYR MET LYS LEU CYS TYR GLN ILE TYR TYR ASP ILE VAL SEQRES 48 A 817 HIS GLU VAL ALA TRP GLU ALA GLU LYS GLU GLN GLY ARG SEQRES 49 A 817 GLU LEU VAL SER PHE PHE ARG LYS GLY TRP GLU ASP TYR SEQRES 50 A 817 LEU LEU GLY TYR TYR GLU GLU ALA GLU TRP LEU ALA ALA SEQRES 51 A 817 GLU TYR VAL PRO THR LEU ASP GLU TYR ILE LYS ASN GLY SEQRES 52 A 817 ILE THR SER ILE GLY GLN ARG ILE LEU LEU LEU SER GLY SEQRES 53 A 817 VAL LEU ILE MET ASP GLY GLN LEU LEU SER GLN GLU ALA SEQRES 54 A 817 LEU GLU LYS VAL ASP TYR PRO GLY ARG ARG VAL LEU THR SEQRES 55 A 817 GLU LEU ASN SER LEU ILE SER ARG LEU ALA ASP ASP THR SEQRES 56 A 817 LYS THR TYR LYS ALA GLU LYS ALA ARG GLY GLU LEU ALA SEQRES 57 A 817 SER SER ILE GLU CYS TYR MET LYS ASP HIS PRO GLU CYS SEQRES 58 A 817 THR GLU GLU GLU ALA LEU ASP HIS ILE TYR SER ILE LEU SEQRES 59 A 817 GLU PRO ALA VAL LYS GLU LEU THR ARG GLU PHE LEU LYS SEQRES 60 A 817 PRO ASP ASP VAL PRO PHE ALA CYS LYS LYS MET LEU PHE SEQRES 61 A 817 GLU GLU THR ARG VAL THR MET VAL ILE PHE LYS ASP GLY SEQRES 62 A 817 ASP GLY PHE GLY VAL SER LYS LEU GLU VAL LYS ASP HIS SEQRES 63 A 817 ILE LYS GLU CYS LEU ILE GLU PRO LEU PRO LEU HET CL A 818 1 HET MG A 819 1 HET MG A 820 1 HET MG A 821 1 HET 210 A 822 13 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM 210 PAMIDRONATE HETSYN 210 (3-AMINO-1-HYDROXY-1-PHOSPHONO-PROPYL)PHOSPHONIC ACID FORMUL 2 CL CL 1- FORMUL 3 MG 3(MG 2+) FORMUL 6 210 C3 H11 N O7 P2 FORMUL 7 HOH *506(H2 O) HELIX 1 1 TRP A 35 SER A 42 1 8 HELIX 2 2 SER A 45 ILE A 48 5 4 HELIX 3 3 ASP A 49 THR A 72 1 24 HELIX 4 4 SER A 82 ARG A 91 1 10 HELIX 5 5 PHE A 103 ASN A 113 1 11 HELIX 6 6 LEU A 127 TRP A 145 1 19 HELIX 7 7 GLY A 148 GLU A 164 1 17 HELIX 8 8 ASP A 168 GLN A 172 5 5 HELIX 9 9 ASP A 178 LEU A 193 1 16 HELIX 10 10 LEU A 201 LYS A 217 1 17 HELIX 11 11 SER A 219 TYR A 224 1 6 HELIX 12 12 SER A 228 ILE A 237 5 10 HELIX 13 13 ARG A 245 GLN A 250 5 6 HELIX 14 14 SER A 259 GLY A 271 1 13 HELIX 15 15 ASP A 272 GLY A 287 1 16 HELIX 16 16 VAL A 296 LEU A 311 1 16 HELIX 17 17 ILE A 313 HIS A 316 5 4 HELIX 18 18 PHE A 317 TRP A 332 1 16 HELIX 19 19 ASP A 347 HIS A 361 1 15 HELIX 20 20 SER A 366 LYS A 374 5 9 HELIX 21 21 GLN A 386 GLN A 402 1 17 HELIX 22 22 GLU A 408 GLU A 427 1 20 HELIX 23 23 LYS A 428 SER A 432 5 5 HELIX 24 24 SER A 433 GLN A 439 1 7 HELIX 25 25 ASN A 440 THR A 451 1 12 HELIX 26 26 VAL A 457 GLN A 467 1 11 HELIX 27 27 ASN A 488 SER A 520 1 33 HELIX 28 28 GLY A 521 PHE A 525 5 5 HELIX 29 29 ARG A 531 ALA A 541 1 11 HELIX 30 30 GLU A 545 GLN A 547 5 3 HELIX 31 31 TYR A 548 THR A 571 1 24 HELIX 32 32 THR A 574 TRP A 588 1 15 HELIX 33 33 ASP A 589 LEU A 596 5 8 HELIX 34 34 PRO A 597 GLY A 623 1 27 HELIX 35 35 LEU A 626 ALA A 650 1 25 HELIX 36 36 THR A 655 ILE A 667 1 13 HELIX 37 37 GLY A 668 LEU A 678 1 11 HELIX 38 38 SER A 686 LYS A 692 1 7 HELIX 39 39 VAL A 700 THR A 717 1 18 HELIX 40 40 SER A 729 HIS A 738 1 10 HELIX 41 41 THR A 742 LYS A 767 1 26 HELIX 42 42 PRO A 772 PHE A 790 1 19 HELIX 43 43 SER A 799 ILE A 812 1 14 SHEET 1 A 2 ARG A 475 ILE A 476 0 SHEET 2 A 2 VAL A 480 TYR A 481 -1 O TYR A 481 N ARG A 475 LINK OD2 ASP A 566 MG MG A 819 1555 1555 2.12 LINK OD1 ASP A 566 MG MG A 821 1555 1555 2.06 LINK OD2 ASP A 570 MG MG A 819 1555 1555 2.18 LINK OD2 ASP A 570 MG MG A 821 1555 1555 2.10 LINK MG MG A 819 O9 210 A 822 1555 1555 1.91 LINK MG MG A 819 O5 210 A 822 1555 1555 2.09 LINK MG MG A 819 O HOH A1320 1555 1555 2.05 LINK MG MG A 819 O HOH A1321 1555 1555 2.10 LINK MG MG A 820 O2 210 A 822 1555 1555 2.03 LINK MG MG A 820 O10 210 A 822 1555 1555 2.48 LINK MG MG A 820 O HOH A1317 1555 1555 2.07 LINK MG MG A 820 O HOH A1318 1555 1555 2.07 LINK MG MG A 820 O HOH A1319 1555 1555 2.07 LINK MG MG A 821 O9 210 A 822 1555 1555 2.01 LINK MG MG A 821 O HOH A1322 1555 1555 2.09 LINK MG MG A 821 O HOH A1323 1555 1555 2.08 LINK MG MG A 821 O HOH A1324 1555 1555 2.06 CISPEP 1 TYR A 294 PRO A 295 0 -5.78 SITE 1 AC1 3 HIS A 125 GLN A 439 ARG A 470 SITE 1 AC2 6 ASP A 566 ASP A 570 MG A 821 210 A 822 SITE 2 AC2 6 HOH A1320 HOH A1321 SITE 1 AC3 5 ASP A 713 210 A 822 HOH A1317 HOH A1318 SITE 2 AC3 5 HOH A1319 SITE 1 AC4 7 ASP A 566 ASP A 570 MG A 819 210 A 822 SITE 2 AC4 7 HOH A1322 HOH A1323 HOH A1324 SITE 1 AC5 14 ASP A 566 ASP A 570 ARG A 710 ASP A 713 SITE 2 AC5 14 MG A 819 MG A 820 MG A 821 HOH A1317 SITE 3 AC5 14 HOH A1318 HOH A1319 HOH A1320 HOH A1321 SITE 4 AC5 14 HOH A1322 HOH A1324 CRYST1 156.458 54.479 126.607 90.00 119.37 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006391 0.000000 0.003597 0.00000 SCALE2 0.000000 0.018356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009064 0.00000