HEADER LYASE 09-JUN-11 3SDT TITLE STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A PROSPECTIVE TITLE 2 TARGET FOR ADVANCED BIOFUELS PRODUCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-BISABOLENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (E)-ALPHA-BISABOLENE SYNTHASE, AGFEABIS; COMPND 5 EC: 4.2.3.38; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ABIES GRANDIS; SOURCE 3 ORGANISM_COMMON: GRAND FIR,LOWLAND FIR,LOWLAND WHITE FIR,SILVER FIR, SOURCE 4 WHITE FIR,YELLOW FIR; SOURCE 5 ORGANISM_TAXID: 46611; SOURCE 6 GENE: AG1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSKB3 KEYWDS LYASE, TERPENE SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA,M.Z.HADI, AUTHOR 2 J.D.KEASLING,P.D.ADAMS REVDAT 3 28-FEB-24 3SDT 1 REMARK HETSYN LINK REVDAT 2 28-MAR-12 3SDT 1 JRNL REVDAT 1 14-DEC-11 3SDT 0 JRNL AUTH R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA, JRNL AUTH 2 M.Z.HADI,J.D.KEASLING,P.D.ADAMS JRNL TITL STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A JRNL TITL 2 PROSPECTIVE TARGET FOR ADVANCED BIOFUELS PRODUCTION. JRNL REF STRUCTURE V. 19 1876 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22153510 JRNL DOI 10.1016/J.STR.2011.09.013 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_778) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 74803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3117 - 4.5363 1.00 5401 149 0.1558 0.1967 REMARK 3 2 4.5363 - 3.6015 1.00 5301 146 0.1411 0.1582 REMARK 3 3 3.6015 - 3.1465 1.00 5285 144 0.1718 0.1982 REMARK 3 4 3.1465 - 2.8589 1.00 5225 144 0.1861 0.2422 REMARK 3 5 2.8589 - 2.6540 1.00 5275 145 0.1805 0.2105 REMARK 3 6 2.6540 - 2.4976 1.00 5240 144 0.1718 0.2229 REMARK 3 7 2.4976 - 2.3725 1.00 5215 142 0.1654 0.2124 REMARK 3 8 2.3725 - 2.2692 1.00 5217 144 0.1634 0.2046 REMARK 3 9 2.2692 - 2.1819 1.00 5208 142 0.1675 0.2050 REMARK 3 10 2.1819 - 2.1066 1.00 5258 144 0.1783 0.2240 REMARK 3 11 2.1066 - 2.0407 1.00 5208 143 0.1749 0.2548 REMARK 3 12 2.0407 - 1.9824 0.99 5161 143 0.1917 0.2323 REMARK 3 13 1.9824 - 1.9302 0.99 5165 142 0.2087 0.2465 REMARK 3 14 1.9302 - 1.8831 0.90 4645 127 0.2800 0.3723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 41.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59950 REMARK 3 B22 (A**2) : 9.40930 REMARK 3 B33 (A**2) : -8.80980 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.59540 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6530 REMARK 3 ANGLE : 0.940 8882 REMARK 3 CHIRALITY : 0.064 971 REMARK 3 PLANARITY : 0.004 1123 REMARK 3 DIHEDRAL : 12.332 2452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 36:73) REMARK 3 ORIGIN FOR THE GROUP (A): 96.3730 26.0634 10.6293 REMARK 3 T TENSOR REMARK 3 T11: 0.2832 T22: 0.1802 REMARK 3 T33: 0.2035 T12: -0.0257 REMARK 3 T13: 0.0444 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 6.8662 L22: 1.0124 REMARK 3 L33: 3.9038 L12: 0.7123 REMARK 3 L13: 4.1646 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.1145 S12: 0.4729 S13: -0.0960 REMARK 3 S21: -0.0649 S22: 0.1201 S23: -0.1715 REMARK 3 S31: -0.0993 S32: 0.4482 S33: -0.0357 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 74:195) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6401 4.3868 9.2959 REMARK 3 T TENSOR REMARK 3 T11: 0.3041 T22: 0.0963 REMARK 3 T33: 0.1758 T12: -0.0906 REMARK 3 T13: -0.0080 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 2.5201 L22: 1.5912 REMARK 3 L33: 2.1385 L12: -0.5284 REMARK 3 L13: 0.5148 L23: -0.0803 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.1623 S13: -0.2331 REMARK 3 S21: -0.1275 S22: -0.0070 S23: 0.0303 REMARK 3 S31: 0.4763 S32: -0.2037 S33: -0.0092 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 196:223) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9530 3.8422 26.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.3049 T22: 0.2981 REMARK 3 T33: 0.2059 T12: -0.1116 REMARK 3 T13: 0.0088 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 4.3434 L22: 5.8644 REMARK 3 L33: 1.7804 L12: -4.5013 REMARK 3 L13: -1.0545 L23: -0.2538 REMARK 3 S TENSOR REMARK 3 S11: -0.3292 S12: -0.5834 S13: -0.3320 REMARK 3 S21: 0.3697 S22: 0.4206 S23: 0.2967 REMARK 3 S31: 0.1476 S32: 0.0587 S33: -0.0745 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 224:293) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5366 20.5465 13.8897 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.1688 REMARK 3 T33: 0.1628 T12: -0.0446 REMARK 3 T13: -0.0105 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.9668 L22: 1.4301 REMARK 3 L33: 4.3559 L12: 0.0792 REMARK 3 L13: -1.5443 L23: -0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.0273 S13: 0.1148 REMARK 3 S21: -0.0224 S22: -0.0201 S23: 0.1906 REMARK 3 S31: 0.1304 S32: -0.5020 S33: -0.0130 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 294:382) REMARK 3 ORIGIN FOR THE GROUP (A): 71.3882 30.8538 22.9334 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.1016 REMARK 3 T33: 0.1892 T12: 0.0185 REMARK 3 T13: 0.0071 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 4.1479 L22: 1.7591 REMARK 3 L33: 2.5282 L12: 0.3143 REMARK 3 L13: -0.4996 L23: 0.7118 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.2744 S13: 0.2549 REMARK 3 S21: 0.0203 S22: -0.0288 S23: 0.2628 REMARK 3 S31: 0.0009 S32: -0.1914 S33: 0.0628 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 383:445) REMARK 3 ORIGIN FOR THE GROUP (A): 73.1476 17.2585 33.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.2193 REMARK 3 T33: 0.1774 T12: -0.0591 REMARK 3 T13: 0.0207 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.6286 L22: 7.6307 REMARK 3 L33: 2.6398 L12: 0.5868 REMARK 3 L13: 0.1473 L23: 2.5406 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: -0.3153 S13: -0.0109 REMARK 3 S21: 0.6028 S22: -0.1900 S23: 0.2643 REMARK 3 S31: 0.3681 S32: -0.0792 S33: 0.0908 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 446:580) REMARK 3 ORIGIN FOR THE GROUP (A): 99.5196 27.0852 28.2345 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.2148 REMARK 3 T33: 0.1482 T12: 0.0105 REMARK 3 T13: 0.0115 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.6512 L22: 0.5023 REMARK 3 L33: 0.6530 L12: 0.5256 REMARK 3 L13: 0.3231 L23: 0.1685 REMARK 3 S TENSOR REMARK 3 S11: 0.0517 S12: -0.2455 S13: -0.1412 REMARK 3 S21: 0.0377 S22: -0.0301 S23: -0.1001 REMARK 3 S31: 0.0615 S32: 0.1896 S33: -0.0392 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 581:702) REMARK 3 ORIGIN FOR THE GROUP (A): 107.0121 45.9461 41.4394 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.4539 REMARK 3 T33: 0.1685 T12: -0.0880 REMARK 3 T13: 0.0061 T23: -0.1252 REMARK 3 L TENSOR REMARK 3 L11: 1.5339 L22: 0.6644 REMARK 3 L33: 0.9041 L12: -0.4656 REMARK 3 L13: -0.0072 L23: 0.1605 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.6757 S13: 0.4432 REMARK 3 S21: 0.1591 S22: 0.0199 S23: -0.0177 REMARK 3 S31: -0.1786 S32: 0.1738 S33: 0.0264 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 703:770) REMARK 3 ORIGIN FOR THE GROUP (A): 90.4344 33.1274 50.0573 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.5552 REMARK 3 T33: 0.0988 T12: -0.0872 REMARK 3 T13: 0.1725 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.2118 L22: 0.6808 REMARK 3 L33: 3.5055 L12: -0.0827 REMARK 3 L13: -0.6324 L23: 0.4978 REMARK 3 S TENSOR REMARK 3 S11: 0.2080 S12: -1.1536 S13: -0.5520 REMARK 3 S21: 0.4633 S22: -0.1458 S23: 0.0405 REMARK 3 S31: 0.5190 S32: -0.0807 S33: 0.1441 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 771:817) REMARK 3 ORIGIN FOR THE GROUP (A): 96.7544 25.8849 33.3966 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.2754 REMARK 3 T33: 0.2604 T12: -0.0387 REMARK 3 T13: -0.0123 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.5732 L22: 2.2620 REMARK 3 L33: 3.6775 L12: -0.5011 REMARK 3 L13: -0.7471 L23: 1.3810 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: -0.5153 S13: -0.4702 REMARK 3 S21: 0.5595 S22: -0.0652 S23: 0.0783 REMARK 3 S31: 0.5180 S32: 0.1854 S33: 0.1250 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91760 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74840 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.77300 REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MRSAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW, PHASER, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.5, 100 MM NACL, AND REMARK 280 23% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.24600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.20300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.24600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.20300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 CYS A 15 REMARK 465 ASP A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 ILE A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 PRO A 30 REMARK 465 HIS A 31 REMARK 465 PRO A 32 REMARK 465 ASN A 33 REMARK 465 VAL A 34 REMARK 465 ASN A 377 REMARK 465 GLY A 378 REMARK 465 GLU A 721 REMARK 465 LYS A 722 REMARK 465 ALA A 723 REMARK 465 ARG A 724 REMARK 465 GLY A 725 REMARK 465 GLU A 726 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 173 -174.72 72.04 REMARK 500 SER A 233 40.70 -141.16 REMARK 500 ILE A 381 -101.58 -121.29 REMARK 500 CYS A 382 75.24 38.65 REMARK 500 SER A 383 31.61 -154.32 REMARK 500 ALA A 455 59.82 -91.98 REMARK 500 ALA A 477 -129.37 -138.61 REMARK 500 THR A 571 -66.55 -146.15 REMARK 500 LEU A 626 -3.47 -140.56 REMARK 500 TYR A 695 94.26 -166.66 REMARK 500 THR A 717 -122.67 -115.20 REMARK 500 TYR A 718 -37.50 60.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 819 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 566 OD2 REMARK 620 2 ASP A 570 OD2 89.7 REMARK 620 3 AHD A 822 O10 89.6 171.6 REMARK 620 4 AHD A 822 O15 90.5 79.2 92.4 REMARK 620 5 HOH A1399 O 171.8 85.3 94.4 82.1 REMARK 620 6 HOH A1431 O 92.3 90.5 97.9 169.3 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 821 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 566 OD1 REMARK 620 2 ASP A 570 OD2 90.2 REMARK 620 3 AHD A 822 O15 94.4 80.3 REMARK 620 4 HOH A1153 O 84.9 164.9 85.8 REMARK 620 5 HOH A1287 O 83.6 105.1 174.2 88.6 REMARK 620 6 HOH A1288 O 172.5 95.6 91.3 90.7 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 820 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AHD A 822 O12 REMARK 620 2 AHD A 822 O16 96.2 REMARK 620 3 AHD A 822 O13 86.8 80.8 REMARK 620 4 HOH A1156 O 170.4 85.5 84.2 REMARK 620 5 HOH A1286 O 86.6 172.4 92.4 90.6 REMARK 620 6 HOH A1376 O 92.5 92.0 172.6 96.8 94.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 821 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AHD A 822 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 823 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SAE RELATED DB: PDB REMARK 900 FARNESYL THIOPHOSPHATE BOUND REMARK 900 RELATED ID: 3SDQ RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3SDR RELATED DB: PDB REMARK 900 PAMIDRONATE BOUND REMARK 900 RELATED ID: 3SDU RELATED DB: PDB REMARK 900 RELATED ID: 3SDV RELATED DB: PDB DBREF 3SDT A 1 817 UNP O81086 TPSD1_ABIGR 1 817 SEQRES 1 A 817 MET ALA GLY VAL SER ALA VAL SER LYS VAL SER SER LEU SEQRES 2 A 817 VAL CYS ASP LEU SER SER THR SER GLY LEU ILE ARG ARG SEQRES 3 A 817 THR ALA ASN PRO HIS PRO ASN VAL TRP GLY TYR ASP LEU SEQRES 4 A 817 VAL HIS SER LEU LYS SER PRO TYR ILE ASP SER SER TYR SEQRES 5 A 817 ARG GLU ARG ALA GLU VAL LEU VAL SER GLU ILE LYS ALA SEQRES 6 A 817 MET LEU ASN PRO ALA ILE THR GLY ASP GLY GLU SER MET SEQRES 7 A 817 ILE THR PRO SER ALA TYR ASP THR ALA TRP VAL ALA ARG SEQRES 8 A 817 VAL PRO ALA ILE ASP GLY SER ALA ARG PRO GLN PHE PRO SEQRES 9 A 817 GLN THR VAL ASP TRP ILE LEU LYS ASN GLN LEU LYS ASP SEQRES 10 A 817 GLY SER TRP GLY ILE GLN SER HIS PHE LEU LEU SER ASP SEQRES 11 A 817 ARG LEU LEU ALA THR LEU SER CYS VAL LEU VAL LEU LEU SEQRES 12 A 817 LYS TRP ASN VAL GLY ASP LEU GLN VAL GLU GLN GLY ILE SEQRES 13 A 817 GLU PHE ILE LYS SER ASN LEU GLU LEU VAL LYS ASP GLU SEQRES 14 A 817 THR ASP GLN ASP SER LEU VAL THR ASP PHE GLU ILE ILE SEQRES 15 A 817 PHE PRO SER LEU LEU ARG GLU ALA GLN SER LEU ARG LEU SEQRES 16 A 817 GLY LEU PRO TYR ASP LEU PRO TYR ILE HIS LEU LEU GLN SEQRES 17 A 817 THR LYS ARG GLN GLU ARG LEU ALA LYS LEU SER ARG GLU SEQRES 18 A 817 GLU ILE TYR ALA VAL PRO SER PRO LEU LEU TYR SER LEU SEQRES 19 A 817 GLU GLY ILE GLN ASP ILE VAL GLU TRP GLU ARG ILE MET SEQRES 20 A 817 GLU VAL GLN SER GLN ASP GLY SER PHE LEU SER SER PRO SEQRES 21 A 817 ALA SER THR ALA CYS VAL PHE MET HIS THR GLY ASP ALA SEQRES 22 A 817 LYS CYS LEU GLU PHE LEU ASN SER VAL MET ILE LYS PHE SEQRES 23 A 817 GLY ASN PHE VAL PRO CYS LEU TYR PRO VAL ASP LEU LEU SEQRES 24 A 817 GLU ARG LEU LEU ILE VAL ASP ASN ILE VAL ARG LEU GLY SEQRES 25 A 817 ILE TYR ARG HIS PHE GLU LYS GLU ILE LYS GLU ALA LEU SEQRES 26 A 817 ASP TYR VAL TYR ARG HIS TRP ASN GLU ARG GLY ILE GLY SEQRES 27 A 817 TRP GLY ARG LEU ASN PRO ILE ALA ASP LEU GLU THR THR SEQRES 28 A 817 ALA LEU GLY PHE ARG LEU LEU ARG LEU HIS ARG TYR ASN SEQRES 29 A 817 VAL SER PRO ALA ILE PHE ASP ASN PHE LYS ASP ALA ASN SEQRES 30 A 817 GLY LYS PHE ILE CYS SER THR GLY GLN PHE ASN LYS ASP SEQRES 31 A 817 VAL ALA SER MET LEU ASN LEU TYR ARG ALA SER GLN LEU SEQRES 32 A 817 ALA PHE PRO GLY GLU ASN ILE LEU ASP GLU ALA LYS SER SEQRES 33 A 817 PHE ALA THR LYS TYR LEU ARG GLU ALA LEU GLU LYS SER SEQRES 34 A 817 GLU THR SER SER ALA TRP ASN ASN LYS GLN ASN LEU SER SEQRES 35 A 817 GLN GLU ILE LYS TYR ALA LEU LYS THR SER TRP HIS ALA SEQRES 36 A 817 SER VAL PRO ARG VAL GLU ALA LYS ARG TYR CYS GLN VAL SEQRES 37 A 817 TYR ARG PRO ASP TYR ALA ARG ILE ALA LYS CYS VAL TYR SEQRES 38 A 817 LYS LEU PRO TYR VAL ASN ASN GLU LYS PHE LEU GLU LEU SEQRES 39 A 817 GLY LYS LEU ASP PHE ASN ILE ILE GLN SER ILE HIS GLN SEQRES 40 A 817 GLU GLU MET LYS ASN VAL THR SER TRP PHE ARG ASP SER SEQRES 41 A 817 GLY LEU PRO LEU PHE THR PHE ALA ARG GLU ARG PRO LEU SEQRES 42 A 817 GLU PHE TYR PHE LEU VAL ALA ALA GLY THR TYR GLU PRO SEQRES 43 A 817 GLN TYR ALA LYS CYS ARG PHE LEU PHE THR LYS VAL ALA SEQRES 44 A 817 CYS LEU GLN THR VAL LEU ASP ASP MET TYR ASP THR TYR SEQRES 45 A 817 GLY THR LEU ASP GLU LEU LYS LEU PHE THR GLU ALA VAL SEQRES 46 A 817 ARG ARG TRP ASP LEU SER PHE THR GLU ASN LEU PRO ASP SEQRES 47 A 817 TYR MET LYS LEU CYS TYR GLN ILE TYR TYR ASP ILE VAL SEQRES 48 A 817 HIS GLU VAL ALA TRP GLU ALA GLU LYS GLU GLN GLY ARG SEQRES 49 A 817 GLU LEU VAL SER PHE PHE ARG LYS GLY TRP GLU ASP TYR SEQRES 50 A 817 LEU LEU GLY TYR TYR GLU GLU ALA GLU TRP LEU ALA ALA SEQRES 51 A 817 GLU TYR VAL PRO THR LEU ASP GLU TYR ILE LYS ASN GLY SEQRES 52 A 817 ILE THR SER ILE GLY GLN ARG ILE LEU LEU LEU SER GLY SEQRES 53 A 817 VAL LEU ILE MET ASP GLY GLN LEU LEU SER GLN GLU ALA SEQRES 54 A 817 LEU GLU LYS VAL ASP TYR PRO GLY ARG ARG VAL LEU THR SEQRES 55 A 817 GLU LEU ASN SER LEU ILE SER ARG LEU ALA ASP ASP THR SEQRES 56 A 817 LYS THR TYR LYS ALA GLU LYS ALA ARG GLY GLU LEU ALA SEQRES 57 A 817 SER SER ILE GLU CYS TYR MET LYS ASP HIS PRO GLU CYS SEQRES 58 A 817 THR GLU GLU GLU ALA LEU ASP HIS ILE TYR SER ILE LEU SEQRES 59 A 817 GLU PRO ALA VAL LYS GLU LEU THR ARG GLU PHE LEU LYS SEQRES 60 A 817 PRO ASP ASP VAL PRO PHE ALA CYS LYS LYS MET LEU PHE SEQRES 61 A 817 GLU GLU THR ARG VAL THR MET VAL ILE PHE LYS ASP GLY SEQRES 62 A 817 ASP GLY PHE GLY VAL SER LYS LEU GLU VAL LYS ASP HIS SEQRES 63 A 817 ILE LYS GLU CYS LEU ILE GLU PRO LEU PRO LEU HET CL A 818 1 HET MG A 819 1 HET MG A 820 1 HET MG A 821 1 HET AHD A 822 14 HET GOL A 823 6 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM AHD 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE HETNAM GOL GLYCEROL HETSYN AHD ALENDRONATE; FOSAMAX (TM) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL CL 1- FORMUL 3 MG 3(MG 2+) FORMUL 6 AHD C4 H9 N O7 P2 4- FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *647(H2 O) HELIX 1 1 TRP A 35 LEU A 43 1 9 HELIX 2 2 SER A 45 ILE A 48 5 4 HELIX 3 3 ASP A 49 THR A 72 1 24 HELIX 4 4 SER A 82 VAL A 92 1 11 HELIX 5 5 PHE A 103 ASN A 113 1 11 HELIX 6 6 LEU A 127 TRP A 145 1 19 HELIX 7 7 GLY A 148 GLU A 164 1 17 HELIX 8 8 ASP A 168 GLN A 172 5 5 HELIX 9 9 ASP A 178 LEU A 193 1 16 HELIX 10 10 LEU A 201 LYS A 217 1 17 HELIX 11 11 SER A 219 TYR A 224 1 6 HELIX 12 12 SER A 228 ILE A 237 5 10 HELIX 13 13 ARG A 245 GLN A 250 5 6 HELIX 14 14 SER A 259 GLY A 271 1 13 HELIX 15 15 ASP A 272 GLY A 287 1 16 HELIX 16 16 VAL A 296 LEU A 311 1 16 HELIX 17 17 ILE A 313 HIS A 316 5 4 HELIX 18 18 PHE A 317 TRP A 332 1 16 HELIX 19 19 ASP A 347 HIS A 361 1 15 HELIX 20 20 SER A 366 LYS A 374 5 9 HELIX 21 21 GLN A 386 GLN A 402 1 17 HELIX 22 22 GLU A 408 GLU A 427 1 20 HELIX 23 23 LYS A 428 SER A 432 5 5 HELIX 24 24 SER A 433 GLN A 439 1 7 HELIX 25 25 ASN A 440 THR A 451 1 12 HELIX 26 26 VAL A 457 GLN A 467 1 11 HELIX 27 27 ASN A 488 SER A 520 1 33 HELIX 28 28 GLY A 521 PHE A 525 5 5 HELIX 29 29 ARG A 531 ALA A 541 1 11 HELIX 30 30 GLU A 545 GLN A 547 5 3 HELIX 31 31 TYR A 548 THR A 571 1 24 HELIX 32 32 THR A 574 TRP A 588 1 15 HELIX 33 33 ASP A 589 LEU A 596 5 8 HELIX 34 34 PRO A 597 GLY A 623 1 27 HELIX 35 35 LEU A 626 GLU A 651 1 26 HELIX 36 36 THR A 655 ILE A 667 1 13 HELIX 37 37 GLY A 668 LEU A 678 1 11 HELIX 38 38 SER A 686 ASP A 694 1 9 HELIX 39 39 VAL A 700 THR A 717 1 18 HELIX 40 40 SER A 729 HIS A 738 1 10 HELIX 41 41 THR A 742 LYS A 767 1 26 HELIX 42 42 PRO A 772 PHE A 790 1 19 HELIX 43 43 SER A 799 ILE A 812 1 14 SHEET 1 A 2 ARG A 475 ILE A 476 0 SHEET 2 A 2 VAL A 480 TYR A 481 -1 O TYR A 481 N ARG A 475 LINK OD2 ASP A 566 MG MG A 819 1555 1555 2.15 LINK OD1 ASP A 566 MG MG A 821 1555 1555 2.03 LINK OD2 ASP A 570 MG MG A 819 1555 1555 2.21 LINK OD2 ASP A 570 MG MG A 821 1555 1555 2.10 LINK MG MG A 819 O10 AHD A 822 1555 1555 1.98 LINK MG MG A 819 O15 AHD A 822 1555 1555 2.00 LINK MG MG A 819 O HOH A1399 1555 1555 2.10 LINK MG MG A 819 O HOH A1431 1555 1555 2.02 LINK MG MG A 820 O12 AHD A 822 1555 1555 2.03 LINK MG MG A 820 O16 AHD A 822 1555 1555 2.15 LINK MG MG A 820 O13 AHD A 822 1555 1555 2.20 LINK MG MG A 820 O HOH A1156 1555 1555 2.09 LINK MG MG A 820 O HOH A1286 1555 1555 2.07 LINK MG MG A 820 O HOH A1376 1555 1555 2.04 LINK MG MG A 821 O15 AHD A 822 1555 1555 2.08 LINK MG MG A 821 O HOH A1153 1555 1555 2.09 LINK MG MG A 821 O HOH A1287 1555 1555 2.04 LINK MG MG A 821 O HOH A1288 1555 1555 2.08 CISPEP 1 TYR A 294 PRO A 295 0 -5.65 SITE 1 AC1 3 HIS A 125 GLN A 439 ARG A 470 SITE 1 AC2 6 ASP A 566 ASP A 570 MG A 821 AHD A 822 SITE 2 AC2 6 HOH A1399 HOH A1431 SITE 1 AC3 4 AHD A 822 HOH A1156 HOH A1286 HOH A1376 SITE 1 AC4 7 ASP A 566 ASP A 570 MG A 819 AHD A 822 SITE 2 AC4 7 HOH A1153 HOH A1287 HOH A1288 SITE 1 AC5 19 ASP A 566 ASP A 570 ILE A 667 ARG A 710 SITE 2 AC5 19 ASP A 713 MG A 819 MG A 820 MG A 821 SITE 3 AC5 19 HOH A1052 HOH A1153 HOH A1156 HOH A1158 SITE 4 AC5 19 HOH A1199 HOH A1286 HOH A1288 HOH A1356 SITE 5 AC5 19 HOH A1376 HOH A1399 HOH A1431 SITE 1 AC6 6 TYR A 465 TYR A 469 ARG A 470 TYR A 473 SITE 2 AC6 6 ASN A 487 HOH A 839 CRYST1 156.492 54.406 126.511 90.00 119.37 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006390 0.000000 0.003596 0.00000 SCALE2 0.000000 0.018380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009070 0.00000