HEADER LYASE 09-JUN-11 3SDV TITLE STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A PROSPECTIVE TITLE 2 TARGET FOR ADVANCED BIOFUELS PRODUCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-BISABOLENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (E)-ALPHA-BISABOLENE SYNTHASE, AGFEABIS; COMPND 5 EC: 4.2.3.38; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ABIES GRANDIS; SOURCE 3 ORGANISM_COMMON: GRAND FIR,LOWLAND FIR,LOWLAND WHITE FIR,SILVER FIR, SOURCE 4 WHITE FIR,YELLOW FIR; SOURCE 5 ORGANISM_TAXID: 46611; SOURCE 6 GENE: AG1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSKB3 KEYWDS LYASE, TERPENE SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA,M.Z.HADI, AUTHOR 2 J.D.KEASLING,P.D.ADAMS REVDAT 3 28-FEB-24 3SDV 1 REMARK LINK REVDAT 2 28-MAR-12 3SDV 1 JRNL REVDAT 1 14-DEC-11 3SDV 0 JRNL AUTH R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA, JRNL AUTH 2 M.Z.HADI,J.D.KEASLING,P.D.ADAMS JRNL TITL STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A JRNL TITL 2 PROSPECTIVE TARGET FOR ADVANCED BIOFUELS PRODUCTION. JRNL REF STRUCTURE V. 19 1876 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22153510 JRNL DOI 10.1016/J.STR.2011.09.013 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_778) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 46940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.260 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3630 - 5.2605 1.00 3520 157 0.1610 0.1589 REMARK 3 2 5.2605 - 4.1766 1.00 3426 153 0.1336 0.1678 REMARK 3 3 4.1766 - 3.6490 1.00 3387 150 0.1489 0.1902 REMARK 3 4 3.6490 - 3.3155 1.00 3406 151 0.1795 0.2177 REMARK 3 5 3.3155 - 3.0779 1.00 3381 152 0.1951 0.2405 REMARK 3 6 3.0779 - 2.8965 1.00 3358 148 0.1961 0.2344 REMARK 3 7 2.8965 - 2.7515 1.00 3386 151 0.2014 0.2327 REMARK 3 8 2.7515 - 2.6317 1.00 3372 150 0.1913 0.2224 REMARK 3 9 2.6317 - 2.5304 1.00 3372 150 0.1961 0.2966 REMARK 3 10 2.5304 - 2.4431 1.00 3355 150 0.2132 0.2507 REMARK 3 11 2.4431 - 2.3667 0.95 3181 141 0.2192 0.2850 REMARK 3 12 2.3667 - 2.2991 0.89 2996 134 0.2204 0.2934 REMARK 3 13 2.2991 - 2.2385 0.80 2697 120 0.2255 0.2782 REMARK 3 14 2.2385 - 2.1839 0.63 2103 93 0.2410 0.2843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 32.98 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.85730 REMARK 3 B22 (A**2) : 16.06290 REMARK 3 B33 (A**2) : -7.20560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.07640 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6494 REMARK 3 ANGLE : 0.850 8830 REMARK 3 CHIRALITY : 0.060 966 REMARK 3 PLANARITY : 0.004 1116 REMARK 3 DIHEDRAL : 12.730 2424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 36:73) REMARK 3 ORIGIN FOR THE GROUP (A): 96.7159 25.0694 10.7163 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.3028 REMARK 3 T33: 0.2665 T12: -0.0491 REMARK 3 T13: 0.0480 T23: -0.0632 REMARK 3 L TENSOR REMARK 3 L11: 3.0517 L22: 1.7109 REMARK 3 L33: 6.0139 L12: -0.0226 REMARK 3 L13: 4.2649 L23: -0.5416 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: 0.6543 S13: -0.1942 REMARK 3 S21: -0.1557 S22: -0.0021 S23: -0.2759 REMARK 3 S31: 0.0009 S32: 0.8601 S33: -0.0365 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 74:195) REMARK 3 ORIGIN FOR THE GROUP (A): 57.9110 3.4154 9.3697 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.1830 REMARK 3 T33: 0.2450 T12: -0.1200 REMARK 3 T13: 0.0234 T23: -0.0795 REMARK 3 L TENSOR REMARK 3 L11: 3.1068 L22: 1.7295 REMARK 3 L33: 2.3525 L12: -0.6299 REMARK 3 L13: 0.7146 L23: -0.0816 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: 0.2306 S13: -0.3259 REMARK 3 S21: -0.1387 S22: 0.0268 S23: 0.0559 REMARK 3 S31: 0.5248 S32: -0.2596 S33: -0.0198 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 196:223) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1478 2.6376 27.0368 REMARK 3 T TENSOR REMARK 3 T11: 0.4194 T22: 0.4985 REMARK 3 T33: 0.2945 T12: -0.1620 REMARK 3 T13: 0.0119 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 7.7252 L22: 7.3930 REMARK 3 L33: 2.6133 L12: -7.0151 REMARK 3 L13: -2.8386 L23: 1.5939 REMARK 3 S TENSOR REMARK 3 S11: -0.3898 S12: -0.7555 S13: -0.3960 REMARK 3 S21: 0.5000 S22: 0.5001 S23: 0.4388 REMARK 3 S31: 0.3334 S32: 0.0514 S33: -0.1085 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 224:293) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7153 19.5268 14.0169 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.2448 REMARK 3 T33: 0.2044 T12: -0.0744 REMARK 3 T13: -0.0172 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 6.3097 L22: 1.9274 REMARK 3 L33: 5.0789 L12: -0.2397 REMARK 3 L13: -1.6507 L23: -0.0596 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: -0.0164 S13: 0.2469 REMARK 3 S21: -0.0201 S22: -0.0670 S23: 0.2362 REMARK 3 S31: 0.1122 S32: -0.5536 S33: -0.0119 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 294:382) REMARK 3 ORIGIN FOR THE GROUP (A): 71.5383 29.9491 23.1333 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.1321 REMARK 3 T33: 0.2311 T12: 0.0134 REMARK 3 T13: 0.0039 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 4.9981 L22: 2.3757 REMARK 3 L33: 3.4209 L12: -0.0480 REMARK 3 L13: -0.7613 L23: 1.0029 REMARK 3 S TENSOR REMARK 3 S11: -0.0967 S12: -0.3982 S13: 0.2369 REMARK 3 S21: 0.0358 S22: -0.0034 S23: 0.3605 REMARK 3 S31: -0.0123 S32: -0.1928 S33: 0.0907 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 383:445) REMARK 3 ORIGIN FOR THE GROUP (A): 73.3437 16.2584 33.5110 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.2698 REMARK 3 T33: 0.1964 T12: -0.0599 REMARK 3 T13: 0.0055 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.9809 L22: 8.5170 REMARK 3 L33: 3.1664 L12: 0.5566 REMARK 3 L13: -0.1079 L23: 3.2105 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: -0.4103 S13: -0.0498 REMARK 3 S21: 0.6714 S22: -0.2413 S23: 0.2924 REMARK 3 S31: 0.4154 S32: -0.0639 S33: 0.1562 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 446:580) REMARK 3 ORIGIN FOR THE GROUP (A): 99.7161 26.1310 28.3364 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.3099 REMARK 3 T33: 0.2112 T12: 0.0098 REMARK 3 T13: 0.0083 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.0087 L22: 0.5675 REMARK 3 L33: 0.8852 L12: 0.6460 REMARK 3 L13: 0.5874 L23: 0.3504 REMARK 3 S TENSOR REMARK 3 S11: 0.1082 S12: -0.2716 S13: -0.1874 REMARK 3 S21: 0.0575 S22: -0.0475 S23: -0.1627 REMARK 3 S31: 0.1127 S32: 0.2399 S33: -0.0809 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 581:702) REMARK 3 ORIGIN FOR THE GROUP (A): 107.1008 44.9557 41.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.6133 REMARK 3 T33: 0.2303 T12: -0.1311 REMARK 3 T13: 0.0101 T23: -0.1509 REMARK 3 L TENSOR REMARK 3 L11: 1.5906 L22: 0.4330 REMARK 3 L33: 1.1471 L12: -0.3023 REMARK 3 L13: 0.2378 L23: 0.0419 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.7197 S13: 0.4340 REMARK 3 S21: 0.1974 S22: -0.0169 S23: -0.1067 REMARK 3 S31: -0.2091 S32: 0.2925 S33: 0.0603 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 703:770) REMARK 3 ORIGIN FOR THE GROUP (A): 90.5274 32.2512 50.4286 REMARK 3 T TENSOR REMARK 3 T11: 0.2364 T22: 0.5852 REMARK 3 T33: 0.3017 T12: -0.1190 REMARK 3 T13: 0.0697 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.4495 L22: 0.7131 REMARK 3 L33: 6.3578 L12: 0.1138 REMARK 3 L13: -1.6378 L23: 0.3455 REMARK 3 S TENSOR REMARK 3 S11: -0.1483 S12: -1.0473 S13: -0.4242 REMARK 3 S21: 0.3356 S22: -0.0368 S23: 0.0380 REMARK 3 S31: 0.2460 S32: 0.0256 S33: 0.1822 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 771:817) REMARK 3 ORIGIN FOR THE GROUP (A): 96.9889 24.9224 33.5177 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.4272 REMARK 3 T33: 0.3553 T12: -0.0516 REMARK 3 T13: -0.0225 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 3.6218 L22: 4.6613 REMARK 3 L33: 4.7852 L12: -1.2707 REMARK 3 L13: -1.0610 L23: 1.3452 REMARK 3 S TENSOR REMARK 3 S11: -0.1392 S12: -0.7351 S13: -0.5828 REMARK 3 S21: 0.7235 S22: 0.0024 S23: 0.0694 REMARK 3 S31: 0.5806 S32: 0.3251 S33: 0.1322 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53900 REMARK 200 FOR SHELL : 1.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MRSAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 100 MM NACL, AND 23% REMARK 280 (W/V) PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.38550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.50100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.38550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.50100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 CYS A 15 REMARK 465 ASP A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 ILE A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 PRO A 30 REMARK 465 HIS A 31 REMARK 465 PRO A 32 REMARK 465 ASN A 33 REMARK 465 VAL A 34 REMARK 465 ASN A 377 REMARK 465 GLY A 378 REMARK 465 GLU A 721 REMARK 465 LYS A 722 REMARK 465 ALA A 723 REMARK 465 ARG A 724 REMARK 465 GLY A 725 REMARK 465 GLU A 726 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 173 -167.07 79.04 REMARK 500 SER A 233 39.69 -140.84 REMARK 500 ASP A 375 -128.09 -125.57 REMARK 500 ILE A 381 -94.85 -118.31 REMARK 500 CYS A 382 61.55 34.37 REMARK 500 THR A 384 -54.16 -122.50 REMARK 500 LEU A 403 34.05 -98.15 REMARK 500 ALA A 477 -128.81 -143.51 REMARK 500 THR A 571 -69.86 -130.28 REMARK 500 LEU A 626 -5.54 -142.67 REMARK 500 TYR A 695 93.78 -167.10 REMARK 500 THR A 717 -111.70 -114.45 REMARK 500 TYR A 718 -43.12 63.45 REMARK 500 ALA A 728 134.81 -171.59 REMARK 500 ASP A 769 -174.19 -170.08 REMARK 500 ASP A 792 75.13 50.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 819 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 566 OD2 REMARK 620 2 ASP A 570 OD2 90.7 REMARK 620 3 ASP A 570 OD1 116.8 55.1 REMARK 620 4 911 A 822 O9 76.6 65.6 118.3 REMARK 620 5 911 A 822 O5 70.5 138.2 166.5 73.7 REMARK 620 6 HOH A1073 O 104.4 146.4 91.4 146.7 75.4 REMARK 620 7 HOH A1125 O 144.1 103.4 98.1 79.4 77.3 82.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 821 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 566 OD1 REMARK 620 2 ASP A 570 OD2 79.1 REMARK 620 3 911 A 822 O9 88.5 73.3 REMARK 620 4 HOH A1131 O 95.5 174.5 105.7 REMARK 620 5 HOH A1132 O 78.8 89.5 160.4 90.5 REMARK 620 6 HOH A1150 O 171.5 94.3 94.9 91.2 95.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 820 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 911 A 822 O3 REMARK 620 2 911 A 822 O12 88.3 REMARK 620 3 911 A 822 O14 75.6 73.3 REMARK 620 4 HOH A1135 O 152.9 65.1 90.8 REMARK 620 5 HOH A1136 O 104.9 165.7 104.3 101.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 821 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 911 A 822 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SAE RELATED DB: PDB REMARK 900 FARNESYL BOUND REMARK 900 RELATED ID: 3SDQ RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3SDR RELATED DB: PDB REMARK 900 PAMIDRONATE BOUND REMARK 900 RELATED ID: 3SDT RELATED DB: PDB REMARK 900 ALENDRONATE BOUND REMARK 900 RELATED ID: 3SDU RELATED DB: PDB REMARK 900 GERANYL THIODIPHOSPHATE BOUND DBREF 3SDV A 1 817 UNP O81086 TPSD1_ABIGR 1 817 SEQRES 1 A 817 MET ALA GLY VAL SER ALA VAL SER LYS VAL SER SER LEU SEQRES 2 A 817 VAL CYS ASP LEU SER SER THR SER GLY LEU ILE ARG ARG SEQRES 3 A 817 THR ALA ASN PRO HIS PRO ASN VAL TRP GLY TYR ASP LEU SEQRES 4 A 817 VAL HIS SER LEU LYS SER PRO TYR ILE ASP SER SER TYR SEQRES 5 A 817 ARG GLU ARG ALA GLU VAL LEU VAL SER GLU ILE LYS ALA SEQRES 6 A 817 MET LEU ASN PRO ALA ILE THR GLY ASP GLY GLU SER MET SEQRES 7 A 817 ILE THR PRO SER ALA TYR ASP THR ALA TRP VAL ALA ARG SEQRES 8 A 817 VAL PRO ALA ILE ASP GLY SER ALA ARG PRO GLN PHE PRO SEQRES 9 A 817 GLN THR VAL ASP TRP ILE LEU LYS ASN GLN LEU LYS ASP SEQRES 10 A 817 GLY SER TRP GLY ILE GLN SER HIS PHE LEU LEU SER ASP SEQRES 11 A 817 ARG LEU LEU ALA THR LEU SER CYS VAL LEU VAL LEU LEU SEQRES 12 A 817 LYS TRP ASN VAL GLY ASP LEU GLN VAL GLU GLN GLY ILE SEQRES 13 A 817 GLU PHE ILE LYS SER ASN LEU GLU LEU VAL LYS ASP GLU SEQRES 14 A 817 THR ASP GLN ASP SER LEU VAL THR ASP PHE GLU ILE ILE SEQRES 15 A 817 PHE PRO SER LEU LEU ARG GLU ALA GLN SER LEU ARG LEU SEQRES 16 A 817 GLY LEU PRO TYR ASP LEU PRO TYR ILE HIS LEU LEU GLN SEQRES 17 A 817 THR LYS ARG GLN GLU ARG LEU ALA LYS LEU SER ARG GLU SEQRES 18 A 817 GLU ILE TYR ALA VAL PRO SER PRO LEU LEU TYR SER LEU SEQRES 19 A 817 GLU GLY ILE GLN ASP ILE VAL GLU TRP GLU ARG ILE MET SEQRES 20 A 817 GLU VAL GLN SER GLN ASP GLY SER PHE LEU SER SER PRO SEQRES 21 A 817 ALA SER THR ALA CYS VAL PHE MET HIS THR GLY ASP ALA SEQRES 22 A 817 LYS CYS LEU GLU PHE LEU ASN SER VAL MET ILE LYS PHE SEQRES 23 A 817 GLY ASN PHE VAL PRO CYS LEU TYR PRO VAL ASP LEU LEU SEQRES 24 A 817 GLU ARG LEU LEU ILE VAL ASP ASN ILE VAL ARG LEU GLY SEQRES 25 A 817 ILE TYR ARG HIS PHE GLU LYS GLU ILE LYS GLU ALA LEU SEQRES 26 A 817 ASP TYR VAL TYR ARG HIS TRP ASN GLU ARG GLY ILE GLY SEQRES 27 A 817 TRP GLY ARG LEU ASN PRO ILE ALA ASP LEU GLU THR THR SEQRES 28 A 817 ALA LEU GLY PHE ARG LEU LEU ARG LEU HIS ARG TYR ASN SEQRES 29 A 817 VAL SER PRO ALA ILE PHE ASP ASN PHE LYS ASP ALA ASN SEQRES 30 A 817 GLY LYS PHE ILE CYS SER THR GLY GLN PHE ASN LYS ASP SEQRES 31 A 817 VAL ALA SER MET LEU ASN LEU TYR ARG ALA SER GLN LEU SEQRES 32 A 817 ALA PHE PRO GLY GLU ASN ILE LEU ASP GLU ALA LYS SER SEQRES 33 A 817 PHE ALA THR LYS TYR LEU ARG GLU ALA LEU GLU LYS SER SEQRES 34 A 817 GLU THR SER SER ALA TRP ASN ASN LYS GLN ASN LEU SER SEQRES 35 A 817 GLN GLU ILE LYS TYR ALA LEU LYS THR SER TRP HIS ALA SEQRES 36 A 817 SER VAL PRO ARG VAL GLU ALA LYS ARG TYR CYS GLN VAL SEQRES 37 A 817 TYR ARG PRO ASP TYR ALA ARG ILE ALA LYS CYS VAL TYR SEQRES 38 A 817 LYS LEU PRO TYR VAL ASN ASN GLU LYS PHE LEU GLU LEU SEQRES 39 A 817 GLY LYS LEU ASP PHE ASN ILE ILE GLN SER ILE HIS GLN SEQRES 40 A 817 GLU GLU MET LYS ASN VAL THR SER TRP PHE ARG ASP SER SEQRES 41 A 817 GLY LEU PRO LEU PHE THR PHE ALA ARG GLU ARG PRO LEU SEQRES 42 A 817 GLU PHE TYR PHE LEU VAL ALA ALA GLY THR TYR GLU PRO SEQRES 43 A 817 GLN TYR ALA LYS CYS ARG PHE LEU PHE THR LYS VAL ALA SEQRES 44 A 817 CYS LEU GLN THR VAL LEU ASP ASP MET TYR ASP THR TYR SEQRES 45 A 817 GLY THR LEU ASP GLU LEU LYS LEU PHE THR GLU ALA VAL SEQRES 46 A 817 ARG ARG TRP ASP LEU SER PHE THR GLU ASN LEU PRO ASP SEQRES 47 A 817 TYR MET LYS LEU CYS TYR GLN ILE TYR TYR ASP ILE VAL SEQRES 48 A 817 HIS GLU VAL ALA TRP GLU ALA GLU LYS GLU GLN GLY ARG SEQRES 49 A 817 GLU LEU VAL SER PHE PHE ARG LYS GLY TRP GLU ASP TYR SEQRES 50 A 817 LEU LEU GLY TYR TYR GLU GLU ALA GLU TRP LEU ALA ALA SEQRES 51 A 817 GLU TYR VAL PRO THR LEU ASP GLU TYR ILE LYS ASN GLY SEQRES 52 A 817 ILE THR SER ILE GLY GLN ARG ILE LEU LEU LEU SER GLY SEQRES 53 A 817 VAL LEU ILE MET ASP GLY GLN LEU LEU SER GLN GLU ALA SEQRES 54 A 817 LEU GLU LYS VAL ASP TYR PRO GLY ARG ARG VAL LEU THR SEQRES 55 A 817 GLU LEU ASN SER LEU ILE SER ARG LEU ALA ASP ASP THR SEQRES 56 A 817 LYS THR TYR LYS ALA GLU LYS ALA ARG GLY GLU LEU ALA SEQRES 57 A 817 SER SER ILE GLU CYS TYR MET LYS ASP HIS PRO GLU CYS SEQRES 58 A 817 THR GLU GLU GLU ALA LEU ASP HIS ILE TYR SER ILE LEU SEQRES 59 A 817 GLU PRO ALA VAL LYS GLU LEU THR ARG GLU PHE LEU LYS SEQRES 60 A 817 PRO ASP ASP VAL PRO PHE ALA CYS LYS LYS MET LEU PHE SEQRES 61 A 817 GLU GLU THR ARG VAL THR MET VAL ILE PHE LYS ASP GLY SEQRES 62 A 817 ASP GLY PHE GLY VAL SER LYS LEU GLU VAL LYS ASP HIS SEQRES 63 A 817 ILE LYS GLU CYS LEU ILE GLU PRO LEU PRO LEU HET CL A 818 1 HET MG A 819 1 HET MG A 820 1 HET MG A 821 1 HET 911 A 822 11 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM 911 (1-HYDROXYETHANE-1,1-DIYL)BIS(PHOSPHONIC ACID) HETSYN 911 ETIDRONIC ACID FORMUL 2 CL CL 1- FORMUL 3 MG 3(MG 2+) FORMUL 6 911 C2 H8 O7 P2 FORMUL 7 HOH *328(H2 O) HELIX 1 1 GLY A 36 SER A 42 1 7 HELIX 2 2 SER A 45 ILE A 48 5 4 HELIX 3 3 ASP A 49 THR A 72 1 24 HELIX 4 4 SER A 82 ALA A 90 1 9 HELIX 5 5 PHE A 103 ASN A 113 1 11 HELIX 6 6 LEU A 127 TRP A 145 1 19 HELIX 7 7 GLY A 148 GLU A 164 1 17 HELIX 8 8 ASP A 168 GLN A 172 5 5 HELIX 9 9 ASP A 178 LEU A 193 1 16 HELIX 10 10 LEU A 201 LYS A 217 1 17 HELIX 11 11 SER A 219 TYR A 224 1 6 HELIX 12 12 SER A 228 ILE A 237 5 10 HELIX 13 13 GLU A 242 GLN A 250 5 9 HELIX 14 14 SER A 259 GLY A 271 1 13 HELIX 15 15 ASP A 272 GLY A 287 1 16 HELIX 16 16 VAL A 296 LEU A 311 1 16 HELIX 17 17 ILE A 313 HIS A 316 5 4 HELIX 18 18 PHE A 317 HIS A 331 1 15 HELIX 19 19 ASP A 347 HIS A 361 1 15 HELIX 20 20 SER A 366 LYS A 374 5 9 HELIX 21 21 GLN A 386 GLN A 402 1 17 HELIX 22 22 GLU A 408 LYS A 428 1 21 HELIX 23 23 SER A 429 SER A 432 5 4 HELIX 24 24 SER A 433 GLN A 439 1 7 HELIX 25 25 ASN A 440 THR A 451 1 12 HELIX 26 26 VAL A 457 GLN A 467 1 11 HELIX 27 27 ASN A 488 SER A 520 1 33 HELIX 28 28 GLY A 521 PHE A 525 5 5 HELIX 29 29 ARG A 531 ALA A 541 1 11 HELIX 30 30 GLU A 545 GLN A 547 5 3 HELIX 31 31 TYR A 548 THR A 571 1 24 HELIX 32 32 THR A 574 TRP A 588 1 15 HELIX 33 33 ASP A 589 LEU A 596 5 8 HELIX 34 34 PRO A 597 GLY A 623 1 27 HELIX 35 35 LEU A 626 ALA A 650 1 25 HELIX 36 36 THR A 655 ILE A 667 1 13 HELIX 37 37 GLY A 668 LEU A 678 1 11 HELIX 38 38 SER A 686 LYS A 692 1 7 HELIX 39 39 VAL A 700 THR A 717 1 18 HELIX 40 40 SER A 729 HIS A 738 1 10 HELIX 41 41 THR A 742 LYS A 767 1 26 HELIX 42 42 PRO A 772 PHE A 790 1 19 HELIX 43 43 SER A 799 ILE A 812 1 14 SHEET 1 A 2 ARG A 475 ILE A 476 0 SHEET 2 A 2 VAL A 480 TYR A 481 -1 O TYR A 481 N ARG A 475 LINK OD2 ASP A 566 MG MG A 819 1555 1555 2.32 LINK OD1 ASP A 566 MG MG A 821 1555 1555 2.18 LINK OD2 ASP A 570 MG MG A 819 1555 1555 2.15 LINK OD1 ASP A 570 MG MG A 819 1555 1555 2.53 LINK OD2 ASP A 570 MG MG A 821 1555 1555 2.04 LINK MG MG A 819 O9 911 A 822 1555 1555 2.41 LINK MG MG A 819 O5 911 A 822 1555 1555 2.41 LINK MG MG A 819 O HOH A1073 1555 1555 2.08 LINK MG MG A 819 O HOH A1125 1555 1555 2.10 LINK MG MG A 820 O3 911 A 822 1555 1555 2.12 LINK MG MG A 820 O12 911 A 822 1555 1555 2.23 LINK MG MG A 820 O14 911 A 822 1555 1555 2.57 LINK MG MG A 820 O HOH A1135 1555 1555 2.07 LINK MG MG A 820 O HOH A1136 1555 1555 2.07 LINK MG MG A 821 O9 911 A 822 1555 1555 2.11 LINK MG MG A 821 O HOH A1131 1555 1555 2.09 LINK MG MG A 821 O HOH A1132 1555 1555 2.10 LINK MG MG A 821 O HOH A1150 1555 1555 2.06 CISPEP 1 TYR A 294 PRO A 295 0 -5.95 SITE 1 AC1 5 HIS A 125 GLN A 439 ARG A 470 ALA A 474 SITE 2 AC1 5 HOH A1072 SITE 1 AC2 6 ASP A 566 ASP A 570 MG A 821 911 A 822 SITE 2 AC2 6 HOH A1073 HOH A1125 SITE 1 AC3 3 911 A 822 HOH A1135 HOH A1136 SITE 1 AC4 7 ASP A 566 ASP A 570 MG A 819 911 A 822 SITE 2 AC4 7 HOH A1131 HOH A1132 HOH A1150 SITE 1 AC5 12 ASP A 566 ASP A 570 ARG A 710 ASP A 713 SITE 2 AC5 12 MG A 819 MG A 820 MG A 821 HOH A1073 SITE 3 AC5 12 HOH A1125 HOH A1131 HOH A1135 HOH A1150 CRYST1 156.771 55.002 127.290 90.00 119.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006379 0.000000 0.003580 0.00000 SCALE2 0.000000 0.018181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009009 0.00000