HEADER ISOMERASE 09-JUN-11 3SDW TITLE CRYSTAL STRUCTURE OF A RIBOSE-5-PHOSPHATE ISOMERASE B RPIB FROM TITLE 2 COCCIDIOIDES IMMITIS BOUND TO PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE 5-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COCCIDIOIDES IMMITIS; SOURCE 3 ORGANISM_COMMON: VALLEY FEVER FUNGUS; SOURCE 4 ORGANISM_TAXID: 246410; SOURCE 5 STRAIN: RS; SOURCE 6 GENE: CIMG_07932; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, RIBOSE-5-PHOSPHATE, RPIB, VALLEY FEVER, KEYWDS 3 COCCIDIOIDOMYCOSIS, PATHOGENIC FUNGUS, DUST-BORNE PATHOGEN, KEYWDS 4 ISOMERASE, NUCLEOTIDE AND CO-FACTOR BIOGENESIS, PENTOSE PHOSPHATE KEYWDS 5 PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3SDW 1 REMARK SEQADV REVDAT 2 26-OCT-11 3SDW 1 JRNL VERSN REVDAT 1 22-JUN-11 3SDW 0 JRNL AUTH T.E.EDWARDS,A.B.ABRAMOV,E.R.SMITH,R.O.BAYDO,J.T.LEONARD, JRNL AUTH 2 D.J.LEIBLY,K.B.THOMPKINS,M.C.CLIFTON,A.S.GARDBERG, JRNL AUTH 3 B.L.STAKER,W.C.VAN VOORHIS,P.J.MYLER,L.J.STEWART JRNL TITL STRUCTURAL CHARACTERIZATION OF A RIBOSE-5-PHOSPHATE JRNL TITL 2 ISOMERASE B FROM THE PATHOGENIC FUNGUS COCCIDIOIDES IMMITIS. JRNL REF BMC STRUCT.BIOL. V. 11 39 2011 JRNL REFN ESSN 1472-6807 JRNL PMID 21995815 JRNL DOI 10.1186/1472-6807-11-39 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1031 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.066 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1227 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1665 ; 1.288 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 163 ; 5.142 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;36.981 ;24.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 207 ;10.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;11.876 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 200 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 899 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 794 ; 0.633 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1277 ; 1.069 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 433 ; 1.996 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 385 ; 3.313 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4449 9.3781 11.9991 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.0523 REMARK 3 T33: 0.0781 T12: 0.0212 REMARK 3 T13: -0.0017 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.2208 L22: 2.2505 REMARK 3 L33: 1.4070 L12: 1.1144 REMARK 3 L13: -0.3120 L23: 0.3796 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.0103 S13: -0.2096 REMARK 3 S21: 0.0140 S22: 0.1075 S23: -0.2762 REMARK 3 S31: 0.0869 S32: 0.2496 S33: -0.0694 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3471 17.7775 4.2919 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0257 REMARK 3 T33: 0.0239 T12: 0.0048 REMARK 3 T13: 0.0145 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.8205 L22: 0.7748 REMARK 3 L33: 0.9681 L12: 0.1188 REMARK 3 L13: 0.0315 L23: 0.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.0403 S13: -0.0226 REMARK 3 S21: -0.0739 S22: 0.0311 S23: -0.0255 REMARK 3 S31: -0.0049 S32: 0.0184 S33: -0.0170 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9947 10.8986 15.3764 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0132 REMARK 3 T33: 0.0267 T12: 0.0056 REMARK 3 T13: 0.0036 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.8536 L22: 0.9114 REMARK 3 L33: 1.1077 L12: 0.1480 REMARK 3 L13: 0.3058 L23: 0.7337 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0004 S13: -0.0435 REMARK 3 S21: 0.0474 S22: -0.0009 S23: 0.0016 REMARK 3 S31: 0.0971 S32: -0.0301 S33: -0.0211 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2233 13.2024 -4.5419 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.0522 REMARK 3 T33: 0.0471 T12: 0.0035 REMARK 3 T13: -0.0350 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.3617 L22: 1.5291 REMARK 3 L33: 3.1270 L12: 1.1914 REMARK 3 L13: -1.0927 L23: -1.9997 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.1286 S13: -0.1014 REMARK 3 S21: -0.0943 S22: 0.0656 S23: 0.0037 REMARK 3 S31: 0.2192 S32: 0.0130 S33: -0.0996 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3SDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3QD5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COIMA.00584.A.A1 PS00647 AT 66 MG/ML REMARK 280 WITH 20 MM RIBOSE-5-PHOSPHATE AND 12 MM MNCL2 AGAINST PACT REMARK 280 SCREEN CONDITION A2 0.1 M SPG BUFFER PH 5.0, 25% PEG 1500 WITH REMARK 280 20% ETHYLENE GLYCOL AS CRYO-PROTECTION REAGENT, CRYSTAL TRACKING REMARK 280 ID 222975A2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.61000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.14500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.61000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.14500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.61000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.14500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.61000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.14500 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 48.14500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 48.14500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.14500 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.14500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 42.61000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 42.61000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 42.61000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 38.85000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 42.61000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 38.85000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 42.61000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 38.85000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.14500 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 42.61000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.14500 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 38.85000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 48.14500 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 38.85000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 42.61000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 167 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 195 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 24 O HOH A 224 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QD5 RELATED DB: PDB REMARK 900 SAME PROTEIN SOLVED BY IODIDE ION SAD PHASING WITH OXIDIZED REMARK 900 CYSTEINE RESIDUE IN ACTIVE SITE REMARK 900 RELATED ID: 3S5P RELATED DB: PDB REMARK 900 RPIB FROM GIARDIA LAMBLIA REMARK 900 RELATED ID: COIMA.00584.A RELATED DB: TARGETDB DBREF 3SDW A 1 163 UNP P0CL19 RPIB_COCIM 1 163 SEQADV 3SDW MET A -20 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW ALA A -19 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW HIS A -18 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW HIS A -17 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW HIS A -16 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW HIS A -15 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW HIS A -14 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW HIS A -13 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW MET A -12 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW GLY A -11 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW THR A -10 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW LEU A -9 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW GLU A -8 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW ALA A -7 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW GLN A -6 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW THR A -5 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW GLN A -4 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW GLY A -3 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW PRO A -2 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW GLY A -1 UNP P0CL19 EXPRESSION TAG SEQADV 3SDW SER A 0 UNP P0CL19 EXPRESSION TAG SEQRES 1 A 184 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 184 ALA GLN THR GLN GLY PRO GLY SER MET ALA ALA THR PRO SEQRES 3 A 184 LEU PRO PRO LEU ARG LEU ALA ILE ALA CYS ASP ASP ALA SEQRES 4 A 184 GLY VAL SER TYR LYS GLU ALA LEU LYS ALA HIS LEU SER SEQRES 5 A 184 ASP ASN PRO LEU VAL SER SER ILE THR ASP VAL GLY VAL SEQRES 6 A 184 THR SER THR THR ASP LYS THR ALA TYR PRO HIS VAL ALA SEQRES 7 A 184 ILE GLN ALA ALA GLN LEU ILE LYS ASP GLY LYS VAL ASP SEQRES 8 A 184 ARG ALA LEU MET ILE CYS GLY THR GLY LEU GLY VAL ALA SEQRES 9 A 184 ILE SER ALA ASN LYS VAL PRO GLY ILE ARG ALA VAL THR SEQRES 10 A 184 ALA HIS ASP THR PHE SER VAL GLU ARG ALA ILE LEU SER SEQRES 11 A 184 ASN ASP ALA GLN VAL LEU CYS PHE GLY GLN ARG VAL ILE SEQRES 12 A 184 GLY ILE GLU LEU ALA LYS ARG LEU ALA GLY GLU TRP LEU SEQRES 13 A 184 THR TYR ARG PHE ASP GLN LYS SER ALA SER ALA GLN LYS SEQRES 14 A 184 VAL GLN ALA ILE SER ASP TYR GLU LYS LYS PHE VAL GLU SEQRES 15 A 184 VAL ASN HET PO4 A 164 5 HET EDO A 165 4 HET EDO A 166 8 HET CL A 167 1 HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 CL CL 1- FORMUL 6 HOH *173(H2 O) HELIX 1 1 GLY A 19 SER A 31 1 13 HELIX 2 2 ALA A 52 ASP A 66 1 15 HELIX 3 3 GLY A 79 LYS A 88 1 10 HELIX 4 4 ASP A 99 SER A 109 1 11 HELIX 5 5 GLY A 123 THR A 136 1 14 HELIX 6 6 ALA A 144 LYS A 157 1 14 SHEET 1 A 5 VAL A 36 ASP A 41 0 SHEET 2 A 5 LEU A 9 CYS A 15 1 N LEU A 11 O THR A 40 SHEET 3 A 5 ARG A 71 CYS A 76 1 O LEU A 73 N ALA A 12 SHEET 4 A 5 VAL A 114 GLY A 118 1 O LEU A 115 N MET A 74 SHEET 5 A 5 ALA A 94 THR A 96 1 N VAL A 95 O CYS A 116 CISPEP 1 GLY A 43 VAL A 44 0 -3.88 SITE 1 AC1 6 TYR A 53 SER A 109 SER A 145 LYS A 148 SITE 2 AC1 6 HOH A 171 HOH A 315 SITE 1 AC2 5 ARG A 71 ASP A 111 ALA A 112 HOH A 191 SITE 2 AC2 5 HOH A 251 SITE 1 AC3 2 LYS A 88 HOH A 209 SITE 1 AC4 2 ASP A 99 THR A 100 CRYST1 77.700 85.220 96.290 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010385 0.00000