HEADER TRANSFERASE/ANTIBIOTIC 14-JUN-11 3SG9 TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE-2''-PHOSPHOTRANSFERASE TYPE IVA TITLE 2 KANAMYCIN A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: APH(2'')-ID; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS CASSELIFLAVUS; SOURCE 3 ORGANISM_TAXID: 37734; SOURCE 4 GENE: APH(2'')-ID; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBIOTIC RESISTANCE ENZYME, TRANSFERASE, AMINOGLYCOSIDE, KEYWDS 2 PHOSPHOTRANSFERASE, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,D.R.HOUSTON,A.M.BERGHUIS REVDAT 3 28-FEB-24 3SG9 1 REMARK SEQADV REVDAT 2 27-JUL-11 3SG9 1 JRNL REVDAT 1 29-JUN-11 3SG9 0 JRNL AUTH K.SHI,D.R.HOUSTON,A.M.BERGHUIS JRNL TITL CRYSTAL STRUCTURES OF ANTIBIOTIC-BOUND COMPLEXES OF JRNL TITL 2 AMINOGLYCOSIDE 2''-PHOSPHOTRANSFERASE IVA HIGHLIGHT THE JRNL TITL 3 DIVERSITY IN SUBSTRATE BINDING MODES AMONG AMINOGLYCOSIDE JRNL TITL 4 KINASES. JRNL REF BIOCHEMISTRY V. 50 6237 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21678960 JRNL DOI 10.1021/BI200747F REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1685 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4832 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.25000 REMARK 3 B22 (A**2) : -2.00000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.040 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5042 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6831 ; 1.871 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 6.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;36.321 ;25.159 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ;16.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 751 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3809 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2981 ; 1.060 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4838 ; 1.880 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2061 ; 3.134 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1988 ; 4.781 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9742 18.7675 31.8795 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0065 REMARK 3 T33: 0.0229 T12: 0.0023 REMARK 3 T13: 0.0298 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.3874 L22: 1.1673 REMARK 3 L33: 0.2271 L12: 0.0090 REMARK 3 L13: -0.0551 L23: -0.2512 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: -0.0271 S13: -0.0152 REMARK 3 S21: 0.0980 S22: 0.0345 S23: 0.1165 REMARK 3 S31: -0.0230 S32: 0.0051 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 297 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1290 34.9026 1.7652 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.0748 REMARK 3 T33: 0.0286 T12: 0.0046 REMARK 3 T13: -0.0289 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.4057 L22: 1.1635 REMARK 3 L33: 0.0666 L12: -0.1271 REMARK 3 L13: -0.1296 L23: 0.0675 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0218 S13: -0.0020 REMARK 3 S21: -0.0951 S22: -0.0017 S23: -0.0644 REMARK 3 S31: -0.0036 S32: -0.0437 S33: 0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : CONFOCAL DUAL REFLECTION MIRRORS REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32322 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.32000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES, 17% PEG4000, 10% REMARK 280 GLYCEROL, 5% ISOPROPANOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.71300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ARG A 41 CD NE CZ NH1 NH2 REMARK 470 LYS A 113 CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 172 CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 ARG A 265 CZ NH1 NH2 REMARK 470 TYR A 284 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 285 CG SD CE REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 11 CE NZ REMARK 470 LYS B 113 CD CE NZ REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 LYS B 172 CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 ASP B 237 CG OD1 OD2 REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 ARG B 265 NE CZ NH1 NH2 REMARK 470 LYS B 267 CG CD CE NZ REMARK 470 TYR B 278 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS B 192 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -73.79 -91.91 REMARK 500 GLU A 30 119.23 -162.14 REMARK 500 ARG A 41 -1.13 62.41 REMARK 500 ASP A 197 39.23 -141.92 REMARK 500 ASP A 217 76.72 57.75 REMARK 500 SER A 224 -147.50 -158.27 REMARK 500 GLU A 239 -148.07 -125.71 REMARK 500 ASN B 69 13.48 58.51 REMARK 500 ASN B 196 -3.51 69.90 REMARK 500 ASP B 217 68.80 67.46 REMARK 500 SER B 224 -156.32 -173.79 REMARK 500 GLU B 235 108.68 -48.05 REMARK 500 GLU B 239 -146.26 -136.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN B 305 DBREF 3SG9 A 1 297 UNP O68183 O68183_ENTCA 1 297 DBREF 3SG9 B 1 297 UNP O68183 O68183_ENTCA 1 297 SEQADV 3SG9 HIS A 298 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS A 299 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS A 300 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS A 301 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS A 302 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS A 303 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS B 298 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS B 299 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS B 300 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS B 301 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS B 302 UNP O68183 EXPRESSION TAG SEQADV 3SG9 HIS B 303 UNP O68183 EXPRESSION TAG SEQRES 1 A 303 MET ARG THR TYR THR PHE ASP GLN VAL GLU LYS ALA ILE SEQRES 2 A 303 GLU GLN LEU TYR PRO ASP PHE THR ILE ASN THR ILE GLU SEQRES 3 A 303 ILE SER GLY GLU GLY ASN ASP CYS ILE ALA TYR GLU ILE SEQRES 4 A 303 ASN ARG ASP PHE ILE PHE LYS PHE PRO LYS HIS SER ARG SEQRES 5 A 303 GLY SER THR ASN LEU PHE ASN GLU VAL ASN ILE LEU LYS SEQRES 6 A 303 ARG ILE HIS ASN LYS LEU PRO LEU PRO ILE PRO GLU VAL SEQRES 7 A 303 VAL PHE THR GLY MET PRO SER GLU THR TYR GLN MET SER SEQRES 8 A 303 PHE ALA GLY PHE THR LYS ILE LYS GLY VAL PRO LEU THR SEQRES 9 A 303 PRO LEU LEU LEU ASN ASN LEU PRO LYS GLN SER GLN ASN SEQRES 10 A 303 GLN ALA ALA LYS ASP LEU ALA ARG PHE LEU SER GLU LEU SEQRES 11 A 303 HIS SER ILE ASN ILE SER GLY PHE LYS SER ASN LEU VAL SEQRES 12 A 303 LEU ASP PHE ARG GLU LYS ILE ASN GLU ASP ASN LYS LYS SEQRES 13 A 303 ILE LYS LYS LEU LEU SER ARG GLU LEU LYS GLY PRO GLN SEQRES 14 A 303 MET LYS LYS VAL ASP ASP PHE TYR ARG ASP ILE LEU GLU SEQRES 15 A 303 ASN GLU ILE TYR PHE LYS TYR TYR PRO CYS LEU ILE HIS SEQRES 16 A 303 ASN ASP PHE SER SER ASP HIS ILE LEU PHE ASP THR GLU SEQRES 17 A 303 LYS ASN THR ILE CYS GLY ILE ILE ASP PHE GLY ASP ALA SEQRES 18 A 303 ALA ILE SER ASP PRO ASP ASN ASP PHE ILE SER LEU MET SEQRES 19 A 303 GLU ASP ASP GLU GLU TYR GLY MET GLU PHE VAL SER LYS SEQRES 20 A 303 ILE LEU ASN HIS TYR LYS HIS LYS ASP ILE PRO THR VAL SEQRES 21 A 303 LEU GLU LYS TYR ARG MET LYS GLU LYS TYR TRP SER PHE SEQRES 22 A 303 GLU LYS ILE ILE TYR GLY LYS GLU TYR GLY TYR MET ASP SEQRES 23 A 303 TRP TYR GLU GLU GLY LEU ASN GLU ILE ARG SER HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET ARG THR TYR THR PHE ASP GLN VAL GLU LYS ALA ILE SEQRES 2 B 303 GLU GLN LEU TYR PRO ASP PHE THR ILE ASN THR ILE GLU SEQRES 3 B 303 ILE SER GLY GLU GLY ASN ASP CYS ILE ALA TYR GLU ILE SEQRES 4 B 303 ASN ARG ASP PHE ILE PHE LYS PHE PRO LYS HIS SER ARG SEQRES 5 B 303 GLY SER THR ASN LEU PHE ASN GLU VAL ASN ILE LEU LYS SEQRES 6 B 303 ARG ILE HIS ASN LYS LEU PRO LEU PRO ILE PRO GLU VAL SEQRES 7 B 303 VAL PHE THR GLY MET PRO SER GLU THR TYR GLN MET SER SEQRES 8 B 303 PHE ALA GLY PHE THR LYS ILE LYS GLY VAL PRO LEU THR SEQRES 9 B 303 PRO LEU LEU LEU ASN ASN LEU PRO LYS GLN SER GLN ASN SEQRES 10 B 303 GLN ALA ALA LYS ASP LEU ALA ARG PHE LEU SER GLU LEU SEQRES 11 B 303 HIS SER ILE ASN ILE SER GLY PHE LYS SER ASN LEU VAL SEQRES 12 B 303 LEU ASP PHE ARG GLU LYS ILE ASN GLU ASP ASN LYS LYS SEQRES 13 B 303 ILE LYS LYS LEU LEU SER ARG GLU LEU LYS GLY PRO GLN SEQRES 14 B 303 MET LYS LYS VAL ASP ASP PHE TYR ARG ASP ILE LEU GLU SEQRES 15 B 303 ASN GLU ILE TYR PHE LYS TYR TYR PRO CYS LEU ILE HIS SEQRES 16 B 303 ASN ASP PHE SER SER ASP HIS ILE LEU PHE ASP THR GLU SEQRES 17 B 303 LYS ASN THR ILE CYS GLY ILE ILE ASP PHE GLY ASP ALA SEQRES 18 B 303 ALA ILE SER ASP PRO ASP ASN ASP PHE ILE SER LEU MET SEQRES 19 B 303 GLU ASP ASP GLU GLU TYR GLY MET GLU PHE VAL SER LYS SEQRES 20 B 303 ILE LEU ASN HIS TYR LYS HIS LYS ASP ILE PRO THR VAL SEQRES 21 B 303 LEU GLU LYS TYR ARG MET LYS GLU LYS TYR TRP SER PHE SEQRES 22 B 303 GLU LYS ILE ILE TYR GLY LYS GLU TYR GLY TYR MET ASP SEQRES 23 B 303 TRP TYR GLU GLU GLY LEU ASN GLU ILE ARG SER HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS HET KAN A 304 33 HET CL B 304 1 HET KAN B 305 33 HETNAM KAN KANAMYCIN A HETNAM CL CHLORIDE ION FORMUL 3 KAN 2(C18 H36 N4 O11) FORMUL 4 CL CL 1- FORMUL 6 HOH *175(H2 O) HELIX 1 1 THR A 5 TYR A 17 1 13 HELIX 2 2 HIS A 50 HIS A 68 1 19 HELIX 3 3 THR A 104 ASN A 110 1 7 HELIX 4 4 PRO A 112 SER A 132 1 21 HELIX 5 5 LYS A 139 VAL A 143 5 5 HELIX 6 6 ASP A 145 SER A 162 1 18 HELIX 7 7 LYS A 166 GLU A 182 1 17 HELIX 8 8 ASN A 183 PHE A 187 5 5 HELIX 9 9 SER A 199 ASP A 201 5 3 HELIX 10 10 ASP A 227 SER A 232 1 6 HELIX 11 11 GLY A 241 LYS A 253 1 13 HELIX 12 12 ASP A 256 TYR A 282 1 27 HELIX 13 13 TYR A 284 ARG A 296 1 13 HELIX 14 14 THR B 5 TYR B 17 1 13 HELIX 15 15 HIS B 50 ILE B 67 1 18 HELIX 16 16 THR B 104 ASN B 110 1 7 HELIX 17 17 PRO B 112 HIS B 131 1 20 HELIX 18 18 LYS B 139 VAL B 143 5 5 HELIX 19 19 ASP B 145 SER B 162 1 18 HELIX 20 20 LYS B 166 GLU B 182 1 17 HELIX 21 21 ASN B 183 PHE B 187 5 5 HELIX 22 22 SER B 199 ASP B 201 5 3 HELIX 23 23 ASP B 227 SER B 232 1 6 HELIX 24 24 GLY B 241 TYR B 252 1 12 HELIX 25 25 ASP B 256 GLY B 283 1 28 HELIX 26 26 TYR B 284 SER B 297 1 14 SHEET 1 A 5 ILE A 25 GLU A 30 0 SHEET 2 A 5 CYS A 34 ILE A 39 -1 O GLU A 38 N GLU A 26 SHEET 3 A 5 PHE A 43 PRO A 48 -1 O PHE A 45 N TYR A 37 SHEET 4 A 5 ALA A 93 THR A 96 -1 O PHE A 95 N ILE A 44 SHEET 5 A 5 VAL A 78 THR A 81 -1 N VAL A 79 O GLY A 94 SHEET 1 B 3 VAL A 101 PRO A 102 0 SHEET 2 B 3 ILE A 203 ASP A 206 -1 O PHE A 205 N VAL A 101 SHEET 3 B 3 THR A 211 ILE A 215 -1 O THR A 211 N ASP A 206 SHEET 1 C 2 CYS A 192 ILE A 194 0 SHEET 2 C 2 ALA A 222 SER A 224 -1 O SER A 224 N CYS A 192 SHEET 1 D 5 ILE B 25 GLU B 30 0 SHEET 2 D 5 CYS B 34 ILE B 39 -1 O ALA B 36 N GLY B 29 SHEET 3 D 5 PHE B 43 PRO B 48 -1 O PHE B 45 N TYR B 37 SHEET 4 D 5 ALA B 93 THR B 96 -1 O PHE B 95 N ILE B 44 SHEET 5 D 5 VAL B 78 THR B 81 -1 N PHE B 80 O GLY B 94 SHEET 1 E 3 VAL B 101 PRO B 102 0 SHEET 2 E 3 ILE B 203 ASP B 206 -1 O PHE B 205 N VAL B 101 SHEET 3 E 3 THR B 211 ILE B 215 -1 O THR B 211 N ASP B 206 SHEET 1 F 2 CYS B 192 ILE B 194 0 SHEET 2 F 2 ALA B 222 SER B 224 -1 O SER B 224 N CYS B 192 SITE 1 AC1 4 TYR B 17 PRO B 18 ASP B 19 HOH B 368 SITE 1 AC2 11 ASP A 197 SER A 199 HIS A 202 ASP A 220 SITE 2 AC2 11 GLU A 235 GLU A 238 GLU A 239 TRP A 271 SITE 3 AC2 11 TYR A 278 HOH A 350 HOH A 383 SITE 1 AC3 7 ASN B 32 ASP B 197 SER B 199 ASP B 220 SITE 2 AC3 7 GLU B 235 GLU B 268 TRP B 271 CRYST1 42.903 101.426 73.399 90.00 100.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023308 0.000000 0.004365 0.00000 SCALE2 0.000000 0.009859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013861 0.00000