data_3SGO # _entry.id 3SGO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SGO pdb_00003sgo 10.2210/pdb3sgo/pdb RCSB RCSB066179 ? ? WWPDB D_1000066179 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-21 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3SGO _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SGM 'Bromoderivative-2 of amyloid-related segment of alphaB-crystallin residues 90-100' unspecified PDB 3SGN 'Bromoderivative-8 of amyloid-related segment of alphaB-crystallin residues 90-100' unspecified PDB 3SGP 'Amyloid-related segment of alphaB-crystallin residues 90-100 mutant V91L' unspecified PDB 3SGR 'Tandem repeat of amyloid-related segment of alphaB-crystallin residues 90-100 mutant V91L' unspecified PDB 3SGS 'Amyloid-related segment of alphaB-crystallin residues 95-100' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Laganowsky, A.' 1 'Sawaya, M.R.' 2 'Cascio, D.' 3 'Eisenberg, D.' 4 # _citation.id primary _citation.title 'Atomic view of a toxic amyloid small oligomer.' _citation.journal_abbrev Science _citation.journal_volume 335 _citation.page_first 1228 _citation.page_last 1231 _citation.year 2012 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22403391 _citation.pdbx_database_id_DOI 10.1126/science.1213151 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Laganowsky, A.' 1 ? primary 'Liu, C.' 2 ? primary 'Sawaya, M.R.' 3 ? primary 'Whitelegge, J.P.' 4 ? primary 'Park, J.' 5 ? primary 'Zhao, M.' 6 ? primary 'Pensalfini, A.' 7 ? primary 'Soriaga, A.B.' 8 ? primary 'Landau, M.' 9 ? primary 'Teng, P.K.' 10 ? primary 'Cascio, D.' 11 ? primary 'Glabe, C.' 12 ? primary 'Eisenberg, D.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Alpha-crystallin B chain' 1200.467 1 ? ? ? ? 2 water nat water 18.015 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alpha(B)-crystallin, Heat shock protein beta-5, HspB5, Renal carcinoma antigen NY-REN-27, Rosenthal fiber component' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KVKVLGDVIEV _entity_poly.pdbx_seq_one_letter_code_can KVKVLGDVIEV _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 LYS n 1 4 VAL n 1 5 LEU n 1 6 GLY n 1 7 ASP n 1 8 VAL n 1 9 ILE n 1 10 GLU n 1 11 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'synthetic peptide' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 VAL 11 11 11 VAL VAL A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 12 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.4.0061 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 69.284 _cell.length_b 69.284 _cell.length_c 69.284 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3SGO _cell.pdbx_unique_axis ? _cell.Z_PDB 48 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 41 3 2' _symmetry.entry_id 3SGO _symmetry.Int_Tables_number 214 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3SGO _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews ? _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.1M BIS-TRIS pH 6.5, 45% MPD, 0.2M AMMONIUM ACETATE, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-03-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E # _reflns.entry_id 3SGO _reflns.d_resolution_high 2.550 _reflns.d_resolution_low 50.000 _reflns.number_obs 973 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_netI_over_sigmaI 15.500 _reflns.pdbx_chi_squared 1.000 _reflns.pdbx_redundancy 7.900 _reflns.percent_possible_obs 92.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.550 2.640 ? ? ? 0.600 ? ? 1.005 8.600 ? 100 98.000 1 1 2.640 2.750 ? ? ? 0.375 ? ? 0.999 8.300 ? 95 95.000 2 1 2.750 2.870 ? ? ? 0.329 ? ? 1.004 8.700 ? 97 94.200 3 1 2.870 3.020 ? ? ? 0.227 ? ? 1.000 8.600 ? 93 94.900 4 1 3.020 3.210 ? ? ? 0.154 ? ? 0.994 8.300 ? 96 96.000 5 1 3.210 3.460 ? ? ? 0.087 ? ? 1.004 8.600 ? 94 90.400 6 1 3.460 3.810 ? ? ? 0.065 ? ? 0.996 7.700 ? 98 94.200 7 1 3.810 4.360 ? ? ? 0.057 ? ? 0.996 7.500 ? 93 87.700 8 1 4.360 5.490 ? ? ? 0.034 ? ? 1.009 6.400 ? 101 90.200 9 1 5.490 50.000 ? ? ? 0.026 ? ? 0.994 6.900 ? 106 82.200 10 1 # _refine.entry_id 3SGO _refine.ls_d_res_high 2.5570 _refine.ls_d_res_low 48.9700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 92.6600 _refine.ls_number_reflns_obs 972 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2453 _refine.ls_R_factor_R_work 0.2441 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2697 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 6.0000 _refine.ls_number_reflns_R_free 58 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.4954 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.9160 _refine.correlation_coeff_Fo_to_Fc_free 0.9370 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.2200 _refine.overall_SU_ML 0.1070 _refine.overall_SU_B 4.6150 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 77.260 _refine.B_iso_min 20.640 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.252 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 84 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 85 _refine_hist.d_res_high 2.5570 _refine_hist.d_res_low 48.9700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 83 0.022 0.023 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 54 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 111 1.718 2.066 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 138 0.731 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 10 6.020 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 2 68.399 30.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 19 21.339 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 16 0.115 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 82 0.005 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 10 0.000 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 54 2.984 2.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 22 0.890 2.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 89 4.638 3.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 29 3.534 2.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 22 5.685 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.5570 _refine_ls_shell.d_res_low 2.6240 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.7200 _refine_ls_shell.number_reflns_R_work 73 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3850 _refine_ls_shell.R_factor_R_free 0.4680 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 4 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 77 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3SGO _struct.title 'Amyloid-related segment of alphaB-crystallin residues 90-100' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SGO _struct_keywords.text 'amyloid, amyloid oligomer, beta cylindrin, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CRYAB_HUMAN _struct_ref.pdbx_db_accession P02511 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KVKVLGDVIEV _struct_ref.pdbx_align_begin 90 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SGO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02511 _struct_ref_seq.db_align_beg 90 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 100 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6120 ? 1 MORE -38 ? 1 'SSA (A^2)' 4000 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 14_444 -y-1/4,-x-1/4,-z-1/4 0.0000000000 -1.0000000000 0.0000000000 -17.3210000000 -1.0000000000 0.0000000000 0.0000000000 -17.3210000000 0.0000000000 0.0000000000 -1.0000000000 -17.3210000000 5 'crystal symmetry operation' 19_444 -x-1/4,-z-1/4,-y-1/4 -1.0000000000 0.0000000000 0.0000000000 -17.3210000000 0.0000000000 0.0000000000 -1.0000000000 -17.3210000000 0.0000000000 -1.0000000000 0.0000000000 -17.3210000000 6 'crystal symmetry operation' 24_444 -z-1/4,-y-1/4,-x-1/4 0.0000000000 0.0000000000 -1.0000000000 -17.3210000000 0.0000000000 -1.0000000000 0.0000000000 -17.3210000000 -1.0000000000 0.0000000000 0.0000000000 -17.3210000000 # _struct_biol.id 1 _struct_biol.details ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 GLU N N N N 17 GLU CA C N S 18 GLU C C N N 19 GLU O O N N 20 GLU CB C N N 21 GLU CG C N N 22 GLU CD C N N 23 GLU OE1 O N N 24 GLU OE2 O N N 25 GLU OXT O N N 26 GLU H H N N 27 GLU H2 H N N 28 GLU HA H N N 29 GLU HB2 H N N 30 GLU HB3 H N N 31 GLU HG2 H N N 32 GLU HG3 H N N 33 GLU HE2 H N N 34 GLU HXT H N N 35 GLY N N N N 36 GLY CA C N N 37 GLY C C N N 38 GLY O O N N 39 GLY OXT O N N 40 GLY H H N N 41 GLY H2 H N N 42 GLY HA2 H N N 43 GLY HA3 H N N 44 GLY HXT H N N 45 HOH O O N N 46 HOH H1 H N N 47 HOH H2 H N N 48 ILE N N N N 49 ILE CA C N S 50 ILE C C N N 51 ILE O O N N 52 ILE CB C N S 53 ILE CG1 C N N 54 ILE CG2 C N N 55 ILE CD1 C N N 56 ILE OXT O N N 57 ILE H H N N 58 ILE H2 H N N 59 ILE HA H N N 60 ILE HB H N N 61 ILE HG12 H N N 62 ILE HG13 H N N 63 ILE HG21 H N N 64 ILE HG22 H N N 65 ILE HG23 H N N 66 ILE HD11 H N N 67 ILE HD12 H N N 68 ILE HD13 H N N 69 ILE HXT H N N 70 LEU N N N N 71 LEU CA C N S 72 LEU C C N N 73 LEU O O N N 74 LEU CB C N N 75 LEU CG C N N 76 LEU CD1 C N N 77 LEU CD2 C N N 78 LEU OXT O N N 79 LEU H H N N 80 LEU H2 H N N 81 LEU HA H N N 82 LEU HB2 H N N 83 LEU HB3 H N N 84 LEU HG H N N 85 LEU HD11 H N N 86 LEU HD12 H N N 87 LEU HD13 H N N 88 LEU HD21 H N N 89 LEU HD22 H N N 90 LEU HD23 H N N 91 LEU HXT H N N 92 LYS N N N N 93 LYS CA C N S 94 LYS C C N N 95 LYS O O N N 96 LYS CB C N N 97 LYS CG C N N 98 LYS CD C N N 99 LYS CE C N N 100 LYS NZ N N N 101 LYS OXT O N N 102 LYS H H N N 103 LYS H2 H N N 104 LYS HA H N N 105 LYS HB2 H N N 106 LYS HB3 H N N 107 LYS HG2 H N N 108 LYS HG3 H N N 109 LYS HD2 H N N 110 LYS HD3 H N N 111 LYS HE2 H N N 112 LYS HE3 H N N 113 LYS HZ1 H N N 114 LYS HZ2 H N N 115 LYS HZ3 H N N 116 LYS HXT H N N 117 VAL N N N N 118 VAL CA C N S 119 VAL C C N N 120 VAL O O N N 121 VAL CB C N N 122 VAL CG1 C N N 123 VAL CG2 C N N 124 VAL OXT O N N 125 VAL H H N N 126 VAL H2 H N N 127 VAL HA H N N 128 VAL HB H N N 129 VAL HG11 H N N 130 VAL HG12 H N N 131 VAL HG13 H N N 132 VAL HG21 H N N 133 VAL HG22 H N N 134 VAL HG23 H N N 135 VAL HXT H N N 136 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 GLU N CA sing N N 16 GLU N H sing N N 17 GLU N H2 sing N N 18 GLU CA C sing N N 19 GLU CA CB sing N N 20 GLU CA HA sing N N 21 GLU C O doub N N 22 GLU C OXT sing N N 23 GLU CB CG sing N N 24 GLU CB HB2 sing N N 25 GLU CB HB3 sing N N 26 GLU CG CD sing N N 27 GLU CG HG2 sing N N 28 GLU CG HG3 sing N N 29 GLU CD OE1 doub N N 30 GLU CD OE2 sing N N 31 GLU OE2 HE2 sing N N 32 GLU OXT HXT sing N N 33 GLY N CA sing N N 34 GLY N H sing N N 35 GLY N H2 sing N N 36 GLY CA C sing N N 37 GLY CA HA2 sing N N 38 GLY CA HA3 sing N N 39 GLY C O doub N N 40 GLY C OXT sing N N 41 GLY OXT HXT sing N N 42 HOH O H1 sing N N 43 HOH O H2 sing N N 44 ILE N CA sing N N 45 ILE N H sing N N 46 ILE N H2 sing N N 47 ILE CA C sing N N 48 ILE CA CB sing N N 49 ILE CA HA sing N N 50 ILE C O doub N N 51 ILE C OXT sing N N 52 ILE CB CG1 sing N N 53 ILE CB CG2 sing N N 54 ILE CB HB sing N N 55 ILE CG1 CD1 sing N N 56 ILE CG1 HG12 sing N N 57 ILE CG1 HG13 sing N N 58 ILE CG2 HG21 sing N N 59 ILE CG2 HG22 sing N N 60 ILE CG2 HG23 sing N N 61 ILE CD1 HD11 sing N N 62 ILE CD1 HD12 sing N N 63 ILE CD1 HD13 sing N N 64 ILE OXT HXT sing N N 65 LEU N CA sing N N 66 LEU N H sing N N 67 LEU N H2 sing N N 68 LEU CA C sing N N 69 LEU CA CB sing N N 70 LEU CA HA sing N N 71 LEU C O doub N N 72 LEU C OXT sing N N 73 LEU CB CG sing N N 74 LEU CB HB2 sing N N 75 LEU CB HB3 sing N N 76 LEU CG CD1 sing N N 77 LEU CG CD2 sing N N 78 LEU CG HG sing N N 79 LEU CD1 HD11 sing N N 80 LEU CD1 HD12 sing N N 81 LEU CD1 HD13 sing N N 82 LEU CD2 HD21 sing N N 83 LEU CD2 HD22 sing N N 84 LEU CD2 HD23 sing N N 85 LEU OXT HXT sing N N 86 LYS N CA sing N N 87 LYS N H sing N N 88 LYS N H2 sing N N 89 LYS CA C sing N N 90 LYS CA CB sing N N 91 LYS CA HA sing N N 92 LYS C O doub N N 93 LYS C OXT sing N N 94 LYS CB CG sing N N 95 LYS CB HB2 sing N N 96 LYS CB HB3 sing N N 97 LYS CG CD sing N N 98 LYS CG HG2 sing N N 99 LYS CG HG3 sing N N 100 LYS CD CE sing N N 101 LYS CD HD2 sing N N 102 LYS CD HD3 sing N N 103 LYS CE NZ sing N N 104 LYS CE HE2 sing N N 105 LYS CE HE3 sing N N 106 LYS NZ HZ1 sing N N 107 LYS NZ HZ2 sing N N 108 LYS NZ HZ3 sing N N 109 LYS OXT HXT sing N N 110 VAL N CA sing N N 111 VAL N H sing N N 112 VAL N H2 sing N N 113 VAL CA C sing N N 114 VAL CA CB sing N N 115 VAL CA HA sing N N 116 VAL C O doub N N 117 VAL C OXT sing N N 118 VAL CB CG1 sing N N 119 VAL CB CG2 sing N N 120 VAL CB HB sing N N 121 VAL CG1 HG11 sing N N 122 VAL CG1 HG12 sing N N 123 VAL CG1 HG13 sing N N 124 VAL CG2 HG21 sing N N 125 VAL CG2 HG22 sing N N 126 VAL CG2 HG23 sing N N 127 VAL OXT HXT sing N N 128 # _atom_sites.entry_id 3SGO _atom_sites.fract_transf_matrix[1][1] 0.014433 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014433 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014433 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_