data_3SH5 # _entry.id 3SH5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3SH5 RCSB RCSB066195 WWPDB D_1000066195 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3SH4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3SH5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-06-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Van Le, B.' 1 'Kim, K.K.' 2 # _citation.id primary _citation.title 'Crystal Structure of the LG3 Domain of Endorepellin, an Angiogenesis Inhibitor.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 414 _citation.page_first 231 _citation.page_last 242 _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21996443 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.09.048 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Van Le, B.' 1 primary 'Kim, H.' 2 primary 'Choi, J.' 3 primary 'Kim, J.H.' 4 primary 'Hahn, M.J.' 5 primary 'Lee, C.' 6 primary 'Kim, K.K.' 7 primary 'Hwang, H.Y.' 8 # _cell.entry_id 3SH5 _cell.length_a 40.356 _cell.length_b 48.638 _cell.length_c 79.367 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SH5 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'LG3 peptide' 20571.803 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 water nat water 18.015 21 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Laminin-G like domain 3, HSPG2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DAPGQYGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLG SGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCV KNLVLHSARPGAPPPQPLDLQHRAQAGANTRPCPS ; _entity_poly.pdbx_seq_one_letter_code_can ;DAPGQYGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLG SGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCV KNLVLHSARPGAPPPQPLDLQHRAQAGANTRPCPS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 PRO n 1 4 GLY n 1 5 GLN n 1 6 TYR n 1 7 GLY n 1 8 ALA n 1 9 TYR n 1 10 PHE n 1 11 HIS n 1 12 ASP n 1 13 ASP n 1 14 GLY n 1 15 PHE n 1 16 LEU n 1 17 ALA n 1 18 PHE n 1 19 PRO n 1 20 GLY n 1 21 HIS n 1 22 VAL n 1 23 PHE n 1 24 SER n 1 25 ARG n 1 26 SER n 1 27 LEU n 1 28 PRO n 1 29 GLU n 1 30 VAL n 1 31 PRO n 1 32 GLU n 1 33 THR n 1 34 ILE n 1 35 GLU n 1 36 LEU n 1 37 GLU n 1 38 VAL n 1 39 ARG n 1 40 THR n 1 41 SER n 1 42 THR n 1 43 ALA n 1 44 SER n 1 45 GLY n 1 46 LEU n 1 47 LEU n 1 48 LEU n 1 49 TRP n 1 50 GLN n 1 51 GLY n 1 52 VAL n 1 53 GLU n 1 54 VAL n 1 55 GLY n 1 56 GLU n 1 57 ALA n 1 58 GLY n 1 59 GLN n 1 60 GLY n 1 61 LYS n 1 62 ASP n 1 63 PHE n 1 64 ILE n 1 65 SER n 1 66 LEU n 1 67 GLY n 1 68 LEU n 1 69 GLN n 1 70 ASP n 1 71 GLY n 1 72 HIS n 1 73 LEU n 1 74 VAL n 1 75 PHE n 1 76 ARG n 1 77 TYR n 1 78 GLN n 1 79 LEU n 1 80 GLY n 1 81 SER n 1 82 GLY n 1 83 GLU n 1 84 ALA n 1 85 ARG n 1 86 LEU n 1 87 VAL n 1 88 SER n 1 89 GLU n 1 90 ASP n 1 91 PRO n 1 92 ILE n 1 93 ASN n 1 94 ASP n 1 95 GLY n 1 96 GLU n 1 97 TRP n 1 98 HIS n 1 99 ARG n 1 100 VAL n 1 101 THR n 1 102 ALA n 1 103 LEU n 1 104 ARG n 1 105 GLU n 1 106 GLY n 1 107 ARG n 1 108 ARG n 1 109 GLY n 1 110 SER n 1 111 ILE n 1 112 GLN n 1 113 VAL n 1 114 ASP n 1 115 GLY n 1 116 GLU n 1 117 GLU n 1 118 LEU n 1 119 VAL n 1 120 SER n 1 121 GLY n 1 122 ARG n 1 123 SER n 1 124 PRO n 1 125 GLY n 1 126 PRO n 1 127 ASN n 1 128 VAL n 1 129 ALA n 1 130 VAL n 1 131 ASN n 1 132 ALA n 1 133 LYS n 1 134 GLY n 1 135 SER n 1 136 VAL n 1 137 TYR n 1 138 ILE n 1 139 GLY n 1 140 GLY n 1 141 ALA n 1 142 PRO n 1 143 ASP n 1 144 VAL n 1 145 ALA n 1 146 THR n 1 147 LEU n 1 148 THR n 1 149 GLY n 1 150 GLY n 1 151 ARG n 1 152 PHE n 1 153 SER n 1 154 SER n 1 155 GLY n 1 156 ILE n 1 157 THR n 1 158 GLY n 1 159 CYS n 1 160 VAL n 1 161 LYS n 1 162 ASN n 1 163 LEU n 1 164 VAL n 1 165 LEU n 1 166 HIS n 1 167 SER n 1 168 ALA n 1 169 ARG n 1 170 PRO n 1 171 GLY n 1 172 ALA n 1 173 PRO n 1 174 PRO n 1 175 PRO n 1 176 GLN n 1 177 PRO n 1 178 LEU n 1 179 ASP n 1 180 LEU n 1 181 GLN n 1 182 HIS n 1 183 ARG n 1 184 ALA n 1 185 GLN n 1 186 ALA n 1 187 GLY n 1 188 ALA n 1 189 ASN n 1 190 THR n 1 191 ARG n 1 192 PRO n 1 193 CYS n 1 194 PRO n 1 195 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PGBM_HUMAN _struct_ref.pdbx_db_accession P98160 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DAPGQYGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLG SGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCV KNLVLHSARPGAPPPQPLDLQHRAQAGANTRPCPS ; _struct_ref.pdbx_align_begin 4197 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SH5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 195 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P98160 _struct_ref_seq.db_align_beg 4197 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 4391 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 195 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3SH5 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 35.03 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '20% PEG 8000, 200mM calcium acetate, 100mM MES pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A # _reflns.entry_id 3SH5 _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I 3.0 _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 29.00 _reflns.number_all 4115 _reflns.number_obs 4115 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3SH5 _refine.ls_d_res_high 2.8000 _refine.ls_d_res_low 29.00 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF 1065743.0000 _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.32 _refine.ls_number_reflns_obs 3924 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22479 _refine.ls_R_factor_R_work 0.22144 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.30103 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 190 _refine.ls_R_factor_R_free_error 0.0210 _refine.B_iso_mean 22.383 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 4.71 _refine.aniso_B[2][2] -3.26 _refine.aniso_B[3][3] -1.45 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.correlation_coeff_Fo_to_Fc 0.911 _refine.correlation_coeff_Fo_to_Fc_free 0.850 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.512 _refine.overall_SU_ML 0.313 _refine.overall_SU_B 14.952 _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 56.410 _refine.B_iso_min 9.670 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3SH5 _refine_analyze.Luzzati_coordinate_error_obs 0.340 _refine_analyze.Luzzati_sigma_a_obs 0.200 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.500 _refine_analyze.Luzzati_sigma_a_free 0.230 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1369 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1391 _refine_hist.d_res_high 2.8000 _refine_hist.d_res_low 29.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.021 ? 1402 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.690 1.966 ? 1906 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.341 5.000 ? 181 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 43.041 23.016 ? 63 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.296 15.000 ? 207 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.458 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 205 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.022 ? 1106 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.768 1.500 ? 903 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.414 2.000 ? 1442 'X-RAY DIFFRACTION' ? r_scbond_it 2.009 3.000 ? 499 'X-RAY DIFFRACTION' ? r_scangle_it 3.365 4.500 ? 464 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.803 _refine_ls_shell.d_res_low 2.875 _refine_ls_shell.number_reflns_R_work 266 _refine_ls_shell.R_factor_R_work 0.160 _refine_ls_shell.percent_reflns_obs 93.49 _refine_ls_shell.R_factor_R_free 0.344 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top # _struct.entry_id 3SH5 _struct.title 'Calcium-bound Laminin G like domain 3 from human perlecan' _struct.pdbx_descriptor 'LG3 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SH5 _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'Actin disassambly activity, integrin alpha 2 beta 1, METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 19 ? SER A 24 ? PRO A 19 SER A 24 5 ? 6 HELX_P HELX_P2 2 ASP A 143 ? THR A 148 ? ASP A 143 THR A 148 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 159 SG ? ? ? 1_555 A CYS 193 SG ? ? A CYS 159 A CYS 193 1_555 ? ? ? ? ? ? ? 2.023 ? metalc1 metalc ? ? A LEU 79 O ? ? ? 1_555 B CA . CA ? ? A LEU 79 A CA 196 1_555 ? ? ? ? ? ? ? 2.305 ? metalc2 metalc ? ? A ASP 62 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 62 A CA 196 1_555 ? ? ? ? ? ? ? 2.429 ? metalc3 metalc ? ? A ALA 129 O ? ? ? 1_555 B CA . CA ? ? A ALA 129 A CA 196 1_555 ? ? ? ? ? ? ? 2.763 ? metalc4 metalc ? ? A ASN 131 OD1 ? ? ? 1_555 B CA . CA ? ? A ASN 131 A CA 196 1_555 ? ? ? ? ? ? ? 2.769 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 196 A HOH 216 1_555 ? ? ? ? ? ? ? 3.100 ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 196 A HOH 217 1_555 ? ? ? ? ? ? ? 3.113 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 27 A . ? LEU 27 A PRO 28 A ? PRO 28 A 1 -1.34 2 ALA 172 A . ? ALA 172 A PRO 173 A ? PRO 173 A 1 -18.57 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 11 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 83 ? VAL A 87 ? GLU A 83 VAL A 87 A 2 HIS A 72 ? GLN A 78 ? HIS A 72 GLN A 78 A 3 PHE A 63 ? GLN A 69 ? PHE A 63 GLN A 69 A 4 GLY A 45 ? GLY A 51 ? GLY A 45 GLY A 51 A 5 VAL A 136 ? ILE A 138 ? VAL A 136 ILE A 138 A 6 ALA A 8 ? PHE A 18 ? ALA A 8 PHE A 18 A 7 GLY A 158 ? HIS A 166 ? GLY A 158 HIS A 166 A 8 GLU A 32 ? THR A 40 ? GLU A 32 THR A 40 A 9 HIS A 98 ? GLU A 105 ? HIS A 98 GLU A 105 A 10 ARG A 108 ? VAL A 113 ? ARG A 108 VAL A 113 A 11 VAL A 119 ? ARG A 122 ? VAL A 119 ARG A 122 B 1 GLU A 83 ? VAL A 87 ? GLU A 83 VAL A 87 B 2 HIS A 72 ? GLN A 78 ? HIS A 72 GLN A 78 B 3 PHE A 63 ? GLN A 69 ? PHE A 63 GLN A 69 B 4 GLY A 45 ? GLY A 51 ? GLY A 45 GLY A 51 B 5 VAL A 136 ? ILE A 138 ? VAL A 136 ILE A 138 B 6 ALA A 8 ? PHE A 18 ? ALA A 8 PHE A 18 B 7 ALA A 186 ? PRO A 192 ? ALA A 186 PRO A 192 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 86 ? O LEU A 86 N PHE A 75 ? N PHE A 75 A 2 3 O ARG A 76 ? O ARG A 76 N SER A 65 ? N SER A 65 A 3 4 O LEU A 68 ? O LEU A 68 N GLY A 45 ? N GLY A 45 A 4 5 N TRP A 49 ? N TRP A 49 O TYR A 137 ? O TYR A 137 A 5 6 O VAL A 136 ? O VAL A 136 N PHE A 18 ? N PHE A 18 A 6 7 N ALA A 8 ? N ALA A 8 O VAL A 160 ? O VAL A 160 A 7 8 O HIS A 166 ? O HIS A 166 N THR A 33 ? N THR A 33 A 8 9 N GLU A 32 ? N GLU A 32 O ARG A 104 ? O ARG A 104 A 9 10 N GLU A 105 ? N GLU A 105 O ARG A 108 ? O ARG A 108 A 10 11 N GLY A 109 ? N GLY A 109 O GLY A 121 ? O GLY A 121 B 1 2 O LEU A 86 ? O LEU A 86 N PHE A 75 ? N PHE A 75 B 2 3 O ARG A 76 ? O ARG A 76 N SER A 65 ? N SER A 65 B 3 4 O LEU A 68 ? O LEU A 68 N GLY A 45 ? N GLY A 45 B 4 5 N TRP A 49 ? N TRP A 49 O TYR A 137 ? O TYR A 137 B 5 6 O VAL A 136 ? O VAL A 136 N PHE A 18 ? N PHE A 18 B 6 7 N TYR A 9 ? N TYR A 9 O ARG A 191 ? O ARG A 191 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 196' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 62 ? ASP A 62 . ? 1_555 ? 2 AC1 5 LEU A 79 ? LEU A 79 . ? 1_555 ? 3 AC1 5 ALA A 129 ? ALA A 129 . ? 1_555 ? 4 AC1 5 ASN A 131 ? ASN A 131 . ? 1_555 ? 5 AC1 5 HOH C . ? HOH A 216 . ? 1_555 ? # _database_PDB_matrix.entry_id 3SH5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3SH5 _atom_sites.fract_transf_matrix[1][1] 0.024779 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020560 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012600 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 GLN 5 5 ? ? ? A . n A 1 6 TYR 6 6 ? ? ? A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 HIS 21 21 21 HIS HIS A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 VAL 54 54 ? ? ? A . n A 1 55 GLY 55 55 ? ? ? A . n A 1 56 GLU 56 56 ? ? ? A . n A 1 57 ALA 57 57 ? ? ? A . n A 1 58 GLY 58 58 ? ? ? A . n A 1 59 GLN 59 59 ? ? ? A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 TRP 97 97 97 TRP TRP A . n A 1 98 HIS 98 98 98 HIS HIS A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 CYS 159 159 159 CYS CYS A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 HIS 166 166 166 HIS HIS A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 ARG 169 169 169 ARG ARG A . n A 1 170 PRO 170 170 170 PRO PRO A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 PRO 173 173 173 PRO PRO A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 GLN 176 176 176 GLN GLN A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 GLN 181 181 181 GLN GLN A . n A 1 182 HIS 182 182 182 HIS HIS A . n A 1 183 ARG 183 183 183 ARG ARG A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 GLN 185 185 185 GLN GLN A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 PRO 192 192 192 PRO PRO A . n A 1 193 CYS 193 193 193 CYS CYS A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 SER 195 195 195 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 196 1 CA CA A . C 3 HOH 1 197 1 HOH HOH A . C 3 HOH 2 198 2 HOH HOH A . C 3 HOH 3 199 3 HOH HOH A . C 3 HOH 4 200 4 HOH HOH A . C 3 HOH 5 201 5 HOH HOH A . C 3 HOH 6 202 6 HOH HOH A . C 3 HOH 7 203 7 HOH HOH A . C 3 HOH 8 204 8 HOH HOH A . C 3 HOH 9 205 9 HOH HOH A . C 3 HOH 10 206 10 HOH HOH A . C 3 HOH 11 207 11 HOH HOH A . C 3 HOH 12 208 12 HOH HOH A . C 3 HOH 13 209 13 HOH HOH A . C 3 HOH 14 210 14 HOH HOH A . C 3 HOH 15 211 15 HOH HOH A . C 3 HOH 16 212 16 HOH HOH A . C 3 HOH 17 213 17 HOH HOH A . C 3 HOH 18 214 18 HOH HOH A . C 3 HOH 19 215 19 HOH HOH A . C 3 HOH 20 216 20 HOH HOH A . C 3 HOH 21 217 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LEU 79 ? A LEU 79 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 OD2 ? A ASP 62 ? A ASP 62 ? 1_555 87.2 ? 2 O ? A LEU 79 ? A LEU 79 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? A ALA 129 ? A ALA 129 ? 1_555 79.1 ? 3 OD2 ? A ASP 62 ? A ASP 62 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? A ALA 129 ? A ALA 129 ? 1_555 68.4 ? 4 O ? A LEU 79 ? A LEU 79 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 OD1 ? A ASN 131 ? A ASN 131 ? 1_555 166.8 ? 5 OD2 ? A ASP 62 ? A ASP 62 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 OD1 ? A ASN 131 ? A ASN 131 ? 1_555 90.1 ? 6 O ? A ALA 129 ? A ALA 129 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 OD1 ? A ASN 131 ? A ASN 131 ? 1_555 87.9 ? 7 O ? A LEU 79 ? A LEU 79 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 216 ? 1_555 79.5 ? 8 OD2 ? A ASP 62 ? A ASP 62 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 216 ? 1_555 150.3 ? 9 O ? A ALA 129 ? A ALA 129 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 216 ? 1_555 83.0 ? 10 OD1 ? A ASN 131 ? A ASN 131 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 216 ? 1_555 96.8 ? 11 O ? A LEU 79 ? A LEU 79 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 217 ? 1_555 91.5 ? 12 OD2 ? A ASP 62 ? A ASP 62 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 217 ? 1_555 88.0 ? 13 O ? A ALA 129 ? A ALA 129 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 217 ? 1_555 154.8 ? 14 OD1 ? A ASN 131 ? A ASN 131 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 217 ? 1_555 101.4 ? 15 O ? C HOH . ? A HOH 216 ? 1_555 CA ? B CA . ? A CA 196 ? 1_555 O ? C HOH . ? A HOH 217 ? 1_555 118.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-14 2 'Structure model' 1 1 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.contact_author' 3 2 'Structure model' '_software.contact_author_email' 4 2 'Structure model' '_software.date' 5 2 'Structure model' '_software.language' 6 2 'Structure model' '_software.location' 7 2 'Structure model' '_software.name' 8 2 'Structure model' '_software.type' 9 2 'Structure model' '_software.version' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 PHASES . ? ? ? ? phasing ? ? ? 8 REFMAC 5.5.0109 ? ? ? ? refinement ? ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 169 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 170 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 170 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 131.12 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 11.82 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 26 ? ? -139.00 -152.62 2 1 LEU A 27 ? ? -179.95 112.78 3 1 ASN A 93 ? ? -78.51 24.56 4 1 ASP A 114 ? ? 61.28 -113.07 5 1 PRO A 170 ? ? -6.83 -37.89 6 1 ALA A 184 ? ? -103.12 -166.58 7 1 GLN A 185 ? ? -151.38 -55.29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 1 ? A ASP 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A GLN 5 ? A GLN 5 6 1 Y 1 A TYR 6 ? A TYR 6 7 1 Y 1 A VAL 54 ? A VAL 54 8 1 Y 1 A GLY 55 ? A GLY 55 9 1 Y 1 A GLU 56 ? A GLU 56 10 1 Y 1 A ALA 57 ? A ALA 57 11 1 Y 1 A GLY 58 ? A GLY 58 12 1 Y 1 A GLN 59 ? A GLN 59 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH #