HEADER HYDROLASE/HYDROLASE INHIBITOR 16-JUN-11 3SHC TITLE HUMAN THROMBIN IN COMPLEX WITH UBTHR101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 EC: 3.4.21.5; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIRUDIN VARIANT-2; COMPND 11 CHAIN: I; COMPND 12 FRAGMENT: RESIDUES IN UNP 60-72; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 12 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 13 ORGANISM_TAXID: 6421; SOURCE 14 OTHER_DETAILS: SYNTHETIC FRAGMENT OF HIRUDIN FROM HIRUDO MEDICINALIS KEYWDS SERINE PROTEASE, KRINGLE, HYDROLASE, BLOOD COAGULATION, BLOOD KEYWDS 2 CLOTTING, CONVERTION OF FIBRINOGEN TO FIBRIN, CLEAVAGE ON PAIRS OF KEYWDS 3 BASIC RESIDUES, THROMBIN INHIBITOR, GLYCOSYLATION, BLOOD, HYDROLASE- KEYWDS 4 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BIELA,A.HEINE,G.KLEBE REVDAT 4 06-DEC-23 3SHC 1 REMARK REVDAT 3 01-NOV-23 3SHC 1 HETSYN REVDAT 2 29-JUL-20 3SHC 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 20-JUN-12 3SHC 0 JRNL AUTH A.BIELA,M.KHAYAT,H.TAN,J.KONG,A.HEINE,D.HANGAUER,G.KLEBE JRNL TITL IMPACT OF LIGAND AND PROTEIN DESOLVATION ON LIGAND BINDING JRNL TITL 2 TO THE S1 POCKET OF THROMBIN JRNL REF J.MOL.BIOL. V. 418 350 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22366545 JRNL DOI 10.1016/J.JMB.2012.01.054 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 26703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8475 - 3.9475 0.97 2931 142 0.1453 0.1691 REMARK 3 2 3.9475 - 3.1353 0.99 2951 139 0.1464 0.1798 REMARK 3 3 3.1353 - 2.7395 0.97 2880 156 0.1707 0.2213 REMARK 3 4 2.7395 - 2.4893 0.96 2812 157 0.1733 0.2127 REMARK 3 5 2.4893 - 2.3110 0.95 2821 139 0.1623 0.2161 REMARK 3 6 2.3110 - 2.1748 0.95 2798 131 0.1541 0.2103 REMARK 3 7 2.1748 - 2.0660 0.97 2841 177 0.1607 0.1900 REMARK 3 8 2.0660 - 1.9761 0.95 2790 137 0.1705 0.1996 REMARK 3 9 1.9761 - 1.9000 0.87 2582 119 0.1987 0.2711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 39.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.78580 REMARK 3 B22 (A**2) : -2.43670 REMARK 3 B33 (A**2) : -1.34910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.99070 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2492 REMARK 3 ANGLE : 1.062 3386 REMARK 3 CHIRALITY : 0.073 354 REMARK 3 PLANARITY : 0.004 431 REMARK 3 DIHEDRAL : 16.640 971 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 16:37) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7389 -1.2015 12.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.1271 REMARK 3 T33: 0.1084 T12: 0.0356 REMARK 3 T13: -0.0431 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.1242 L22: 0.2155 REMARK 3 L33: 0.0719 L12: -0.0136 REMARK 3 L13: -0.0492 L23: 0.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: 0.0700 S13: -0.1454 REMARK 3 S21: -0.0791 S22: -0.0854 S23: 0.0818 REMARK 3 S31: 0.1535 S32: 0.0267 S33: 0.0060 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 38:107) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4335 -1.5751 12.0574 REMARK 3 T TENSOR REMARK 3 T11: -0.0636 T22: 0.0185 REMARK 3 T33: 0.1208 T12: 0.3446 REMARK 3 T13: 0.0118 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.1013 L22: 0.1416 REMARK 3 L33: 0.0709 L12: -0.0563 REMARK 3 L13: 0.0551 L23: -0.0161 REMARK 3 S TENSOR REMARK 3 S11: 0.2723 S12: 0.2140 S13: -0.0769 REMARK 3 S21: -0.3346 S22: -0.1385 S23: -0.1245 REMARK 3 S31: 0.0997 S32: 0.1710 S33: 0.1886 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 108:144) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2433 6.6591 21.5309 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.0818 REMARK 3 T33: 0.1116 T12: 0.0134 REMARK 3 T13: 0.0092 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.2029 L22: 0.1358 REMARK 3 L33: 0.0449 L12: -0.1583 REMARK 3 L13: -0.0417 L23: 0.0146 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.0335 S13: 0.1036 REMARK 3 S21: -0.0414 S22: -0.0416 S23: -0.1005 REMARK 3 S31: -0.0402 S32: 0.0198 S33: 0.0403 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN H AND RESID 145:171) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0061 -7.8938 26.6353 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.0678 REMARK 3 T33: 0.1226 T12: 0.0108 REMARK 3 T13: -0.0265 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.2960 L22: 0.0211 REMARK 3 L33: 0.2492 L12: -0.0476 REMARK 3 L13: 0.1025 L23: -0.0563 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.0248 S13: -0.2145 REMARK 3 S21: -0.0082 S22: 0.0260 S23: 0.1507 REMARK 3 S31: 0.1941 S32: 0.0260 S33: -0.0986 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN H AND RESID 172:186D) REMARK 3 ORIGIN FOR THE GROUP (A): 13.240 -1.611 25.762 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1029 REMARK 3 T33: 0.1546 T12: 0.0117 REMARK 3 T13: 0.0097 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 0.0541 L22: 0.0195 REMARK 3 L33: 0.1573 L12: 0.0023 REMARK 3 L13: -0.0338 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.0697 S13: -0.0408 REMARK 3 S21: 0.0646 S22: 0.1173 S23: 0.0957 REMARK 3 S31: 0.1044 S32: -0.0104 S33: 0.0088 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN H AND RESID 187:232) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2724 -2.0209 26.3121 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.0603 REMARK 3 T33: 0.1159 T12: 0.0203 REMARK 3 T13: 0.0065 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.4848 L22: 0.0845 REMARK 3 L33: 0.4100 L12: -0.0396 REMARK 3 L13: 0.1378 L23: -0.0412 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.1674 S13: -0.2205 REMARK 3 S21: 0.0085 S22: 0.0111 S23: 0.0582 REMARK 3 S31: 0.2012 S32: -0.0184 S33: -0.0133 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN H AND RESID 233:246) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0029 9.3794 21.8337 REMARK 3 T TENSOR REMARK 3 T11: 0.0904 T22: 0.1336 REMARK 3 T33: 0.3131 T12: -0.0518 REMARK 3 T13: 0.0122 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.0139 L22: 0.0587 REMARK 3 L33: 0.0287 L12: -0.0000 REMARK 3 L13: -0.0190 L23: 0.0057 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.0277 S13: 0.0470 REMARK 3 S21: -0.0271 S22: 0.0129 S23: -0.0822 REMARK 3 S31: -0.0420 S32: 0.0388 S33: -0.0180 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN I AND RESID 54:64) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0489 -1.7391 -2.5520 REMARK 3 T TENSOR REMARK 3 T11: 0.5225 T22: 0.5210 REMARK 3 T33: 0.1178 T12: 0.2151 REMARK 3 T13: 0.0585 T23: -0.1365 REMARK 3 L TENSOR REMARK 3 L11: 0.0054 L22: 0.0139 REMARK 3 L33: 0.0508 L12: -0.0065 REMARK 3 L13: -0.0175 L23: 0.0235 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: 0.0556 S13: -0.0050 REMARK 3 S21: -0.0190 S22: -0.0038 S23: -0.0097 REMARK 3 S31: 0.0030 S32: -0.0285 S33: 0.0096 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN L AND RESID 1C:3) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7806 17.3826 19.7592 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.0893 REMARK 3 T33: 0.1537 T12: 0.0226 REMARK 3 T13: 0.0137 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.0421 L22: 0.0211 REMARK 3 L33: 0.0209 L12: -0.1235 REMARK 3 L13: -0.0746 L23: -0.0090 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.0059 S13: 0.0759 REMARK 3 S21: -0.0216 S22: -0.0016 S23: 0.0619 REMARK 3 S31: -0.0437 S32: -0.0235 S33: 0.0041 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN L AND RESID 4:14B) REMARK 3 ORIGIN FOR THE GROUP (A): -2.277 9.714 25.140 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.1173 REMARK 3 T33: 0.1144 T12: 0.0706 REMARK 3 T13: -0.0063 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.0799 L22: 0.0515 REMARK 3 L33: 0.0355 L12: -0.0000 REMARK 3 L13: 0.0002 L23: 0.0034 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.0465 S13: 0.0136 REMARK 3 S21: -0.0228 S22: -0.0153 S23: 0.0197 REMARK 3 S31: -0.0313 S32: -0.0419 S33: 0.0075 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN L AND RESID 14C:14K) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3766 6.0747 32.4866 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.1898 REMARK 3 T33: 0.1397 T12: 0.0447 REMARK 3 T13: 0.0516 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.0052 L22: 0.0497 REMARK 3 L33: 0.0266 L12: 0.0100 REMARK 3 L13: -0.0074 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0093 S13: -0.0120 REMARK 3 S21: 0.0338 S22: 0.0065 S23: 0.0757 REMARK 3 S31: -0.0042 S32: -0.0521 S33: 0.0106 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27888 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG8000, 20MM SODIUM PHOSPHATE, REMARK 280 175MM SODIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.20000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CZ ARG H 75 LIES ON A SPECIAL POSITION. REMARK 375 HOH H1154 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 1H REMARK 465 PHE L 1G REMARK 465 GLY L 1F REMARK 465 SER L 1E REMARK 465 GLY L 1D REMARK 465 ASP L 14L REMARK 465 GLY L 14M REMARK 465 ARG L 15 REMARK 465 TRP H 148 REMARK 465 THR H 149 REMARK 465 ALA H 149A REMARK 465 ASN H 149B REMARK 465 VAL H 149C REMARK 465 GLY H 149D REMARK 465 LYS H 149E REMARK 465 GLU H 247 REMARK 465 ASN I 53 REMARK 465 GLN I 65 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 1C CG CD OE1 OE2 REMARK 470 SER H 36A OG REMARK 470 LYS H 110 CG CD CE NZ REMARK 470 LYS H 145 CG CD CE NZ REMARK 470 LYS H 236 CG CD CE NZ REMARK 470 LYS H 240 CG CD CE NZ REMARK 470 GLU I 58 CG CD OE1 OE2 REMARK 470 GLU I 61 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 7 -86.09 -127.62 REMARK 500 ALA H 44 -179.87 -173.71 REMARK 500 TYR H 60A 82.88 -152.49 REMARK 500 ASN H 60G 77.58 -158.69 REMARK 500 HIS H 71 -61.76 -130.50 REMARK 500 ILE H 79 -62.87 -126.85 REMARK 500 GLU H 97A -74.00 -117.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE THROMBIN INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(4-CHLOROPYRIDIN-2-YL)METHYL]-L- REMARK 630 PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 B01 H 3 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PRO NNY REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P17 RELATED DB: PDB REMARK 900 RELATED ID: 3QTO RELATED DB: PDB REMARK 900 RELATED ID: 3QTV RELATED DB: PDB REMARK 900 RELATED ID: 3QWC RELATED DB: PDB REMARK 900 RELATED ID: 3QX5 RELATED DB: PDB REMARK 900 RELATED ID: 3RLW RELATED DB: PDB DBREF 3SHC L 1H 15 UNP P00734 THRB_HUMAN 328 363 DBREF 3SHC H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 3SHC I 53 65 UNP P09945 HIRV2_HIRME 60 72 SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 13 ASN GLY ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU GLN MODRES 3SHC ASN H 60G ASN GLYCOSYLATION SITE MODRES 3SHC TYS I 63 TYR O-SULFO-L-TYROSINE HET TYS I 63 16 HET NAG H 260G 14 HET NA H 1 1 HET NA H 2 1 HET B01 H 3 27 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETNAM B01 D-PHENYLALANYL-N-[(4-CHLOROPYRIDIN-2-YL)METHYL]-L- HETNAM 2 B01 PROLINAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 TYS C9 H11 N O6 S FORMUL 4 NAG C8 H15 N O6 FORMUL 5 NA 2(NA 1+) FORMUL 7 B01 C20 H23 CL N4 O2 FORMUL 8 HOH *223(H2 O) HELIX 1 1 PHE L 7 SER L 11 5 5 HELIX 2 2 THR L 14B TYR L 14J 1 9 HELIX 3 3 ALA H 55 CYS H 58 5 4 HELIX 4 4 PRO H 60B ASP H 60E 5 4 HELIX 5 5 THR H 60I ASN H 62 5 3 HELIX 6 6 ASP H 125 LEU H 130 1 9 HELIX 7 7 GLU H 164 SER H 171 1 8 HELIX 8 8 LYS H 185 GLY H 186C 5 5 HELIX 9 9 LEU H 234 GLY H 246 1 13 HELIX 10 10 PRO I 60 LEU I 64 5 5 SHEET 1 A 7 SER H 20 ASP H 21 0 SHEET 2 A 7 GLN H 156 PRO H 161 -1 O VAL H 157 N SER H 20 SHEET 3 A 7 LYS H 135 GLY H 140 -1 N VAL H 138 O VAL H 158 SHEET 4 A 7 PRO H 198 LYS H 202 -1 O VAL H 200 N ARG H 137 SHEET 5 A 7 TRP H 207 TRP H 215 -1 O TYR H 208 N MET H 201 SHEET 6 A 7 GLY H 226 HIS H 230 -1 O PHE H 227 N TRP H 215 SHEET 7 A 7 MET H 180 ALA H 183 -1 N PHE H 181 O TYR H 228 SHEET 1 B 7 GLN H 30 ARG H 35 0 SHEET 2 B 7 GLU H 39 LEU H 46 -1 O LEU H 41 N LEU H 33 SHEET 3 B 7 TRP H 51 THR H 54 -1 O LEU H 53 N SER H 45 SHEET 4 B 7 ALA H 104 LEU H 108 -1 O ALA H 104 N THR H 54 SHEET 5 B 7 LYS H 81 ILE H 90 -1 N GLU H 86 O LYS H 107 SHEET 6 B 7 LEU H 64 ILE H 68 -1 N ILE H 68 O LYS H 81 SHEET 7 B 7 GLN H 30 ARG H 35 -1 N MET H 32 O ARG H 67 SHEET 1 C 2 LEU H 60 TYR H 60A 0 SHEET 2 C 2 LYS H 60F ASN H 60G-1 O LYS H 60F N TYR H 60A SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.06 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.05 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.04 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.06 LINK ND2 ASN H 60G C1 NAG H 260G 1555 1555 1.43 LINK C GLU I 62 N TYS I 63 1555 1555 1.33 LINK C TYS I 63 N LEU I 64 1555 1555 1.33 CISPEP 1 SER H 36A PRO H 37 0 -3.81 CRYST1 70.400 71.400 72.800 90.00 100.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014205 0.000000 0.002658 0.00000 SCALE2 0.000000 0.014006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013975 0.00000