HEADER TRANSFERASE 16-JUN-11 3SHP TITLE CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE FROM SPHAEROBACTER TITLE 2 THERMOPHILUS DSM 20745 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACETYLTRANSFERASE STHE_0691; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHAEROBACTER THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 479434; SOURCE 4 STRAIN: DSM 20745 / S 6022; SOURCE 5 GENE: STHE_0691; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMCSG7 KEYWDS PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 2 ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,H.LI,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 1 06-JUL-11 3SHP 0 JRNL AUTH C.CHANG,H.LI,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE FROM JRNL TITL 2 SPHAEROBACTER THERMOPHILUS DSM 20745 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 23952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1221 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1524 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2559 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2686 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3657 ; 1.409 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 6.372 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;31.544 ;22.283 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 426 ;15.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2064 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1665 ; 1.460 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2649 ; 2.678 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1021 ; 3.113 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1008 ; 4.965 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2686 ; 1.664 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2757 29.9641 18.8495 REMARK 3 T TENSOR REMARK 3 T11: 0.0054 T22: 0.0123 REMARK 3 T33: 0.0055 T12: -0.0013 REMARK 3 T13: 0.0030 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.1656 L22: 0.0562 REMARK 3 L33: 0.1777 L12: 0.0400 REMARK 3 L13: 0.0525 L23: -0.0275 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.0030 S13: 0.0099 REMARK 3 S21: 0.0042 S22: -0.0019 S23: -0.0028 REMARK 3 S31: -0.0022 S32: -0.0052 S33: 0.0072 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8033 18.9908 7.8866 REMARK 3 T TENSOR REMARK 3 T11: 0.0164 T22: 0.0099 REMARK 3 T33: 0.0036 T12: -0.0027 REMARK 3 T13: 0.0010 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.2204 L22: 0.0840 REMARK 3 L33: 0.1125 L12: -0.0530 REMARK 3 L13: -0.0814 L23: 0.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.0006 S13: -0.0223 REMARK 3 S21: 0.0163 S22: 0.0033 S23: 0.0000 REMARK 3 S31: 0.0076 S32: -0.0087 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0601 59.9481 18.0976 REMARK 3 T TENSOR REMARK 3 T11: 0.0158 T22: 0.0113 REMARK 3 T33: 0.0037 T12: 0.0026 REMARK 3 T13: 0.0054 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.3657 L22: 0.3150 REMARK 3 L33: 0.1185 L12: 0.1001 REMARK 3 L13: -0.0079 L23: 0.0355 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.0006 S13: 0.0041 REMARK 3 S21: -0.0320 S22: 0.0026 S23: -0.0128 REMARK 3 S31: -0.0135 S32: -0.0001 S33: -0.0108 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6499 54.2280 4.6474 REMARK 3 T TENSOR REMARK 3 T11: 0.0122 T22: 0.0078 REMARK 3 T33: 0.0024 T12: 0.0009 REMARK 3 T13: 0.0012 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.1246 L22: 0.2060 REMARK 3 L33: 0.4575 L12: -0.0526 REMARK 3 L13: -0.0733 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: 0.0055 S13: 0.0010 REMARK 3 S21: 0.0177 S22: -0.0041 S23: -0.0028 REMARK 3 S31: -0.0465 S32: -0.0222 S33: -0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3SHP COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-11. REMARK 100 THE RCSB ID CODE IS RCSB066215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.300 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXDE, RESOLVE, ARP/WARP, REMARK 200 COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M DI-AMMONIUM TARTRATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.59800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.59800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.86300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.59800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.59800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.86300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.59800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.59800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.86300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.59800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.59800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.86300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.19600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.19600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 89.19600 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 89.19600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 169 REMARK 465 ALA A 170 REMARK 465 ASP A 171 REMARK 465 HIS A 172 REMARK 465 ALA A 173 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ARG B 38 REMARK 465 ALA B 39 REMARK 465 GLU B 40 REMARK 465 LYS B 46 REMARK 465 LEU B 47 REMARK 465 GLN B 48 REMARK 465 GLY B 49 REMARK 465 PRO B 166 REMARK 465 LYS B 167 REMARK 465 VAL B 168 REMARK 465 GLU B 169 REMARK 465 ALA B 170 REMARK 465 ASP B 171 REMARK 465 HIS B 172 REMARK 465 ALA B 173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 35 CG OD1 REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 THR B 81 OG1 CG2 REMARK 470 ASP B 165 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 115 72.36 -104.71 REMARK 500 TRP B 27 23.11 -67.03 REMARK 500 PHE B 28 -21.84 -143.22 REMARK 500 ASP B 29 67.84 -57.54 REMARK 500 ALA B 36 -116.28 -99.03 REMARK 500 ARG B 151 -166.10 -127.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 303 DISTANCE = 5.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRT B 174 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC100700 RELATED DB: TARGETDB DBREF 3SHP A 1 173 UNP D1C1L1 D1C1L1_SPHTD 1 173 DBREF 3SHP B 1 173 UNP D1C1L1 D1C1L1_SPHTD 1 173 SEQADV 3SHP SER A -2 UNP D1C1L1 EXPRESSION TAG SEQADV 3SHP ASN A -1 UNP D1C1L1 EXPRESSION TAG SEQADV 3SHP ALA A 0 UNP D1C1L1 EXPRESSION TAG SEQADV 3SHP SER B -2 UNP D1C1L1 EXPRESSION TAG SEQADV 3SHP ASN B -1 UNP D1C1L1 EXPRESSION TAG SEQADV 3SHP ALA B 0 UNP D1C1L1 EXPRESSION TAG SEQRES 1 A 176 SER ASN ALA MSE GLN ALA VAL TYR LEU THR GLY PRO THR SEQRES 2 A 176 VAL TYR LEU ARG ALA MSE VAL GLU ASP ASP LYS HIS HIS SEQRES 3 A 176 ALA ALA ALA TRP PHE ASP SER ARG PHE PRO VAL ASN ALA SEQRES 4 A 176 ALA ARG ALA GLU ALA PHE LEU LYS GLU LYS LEU GLN GLY SEQRES 5 A 176 ASP PRO TRP ASP ALA ARG TRP HIS LEU LEU ALA ILE VAL SEQRES 6 A 176 ARG ARG SER ASP GLU ALA VAL VAL GLY SER CYS ARG ILE SEQRES 7 A 176 GLU PHE GLY LYS GLN THR ALA SER LEU ARG PHE HIS MSE SEQRES 8 A 176 ALA PRO TRP LEU ASP ASP ALA ASP VAL LEU ARG ALA GLU SEQRES 9 A 176 ALA LEU GLU LEU VAL VAL PRO TRP LEU ARG ASP GLU HIS SEQRES 10 A 176 GLU LEU LEU VAL ILE THR VAL GLU ILE ALA ALA ASP GLU SEQRES 11 A 176 GLN ARG THR LEU ALA ALA ALA GLU ALA ALA GLY LEU LYS SEQRES 12 A 176 ALA ALA VAL ARG MSE ARG GLU ALA ILE ALA ARG ALA GLY SEQRES 13 A 176 HIS ARG VAL ASP LEU LEU ILE TYR GLN ALA VAL ASP PRO SEQRES 14 A 176 LYS VAL GLU ALA ASP HIS ALA SEQRES 1 B 176 SER ASN ALA MSE GLN ALA VAL TYR LEU THR GLY PRO THR SEQRES 2 B 176 VAL TYR LEU ARG ALA MSE VAL GLU ASP ASP LYS HIS HIS SEQRES 3 B 176 ALA ALA ALA TRP PHE ASP SER ARG PHE PRO VAL ASN ALA SEQRES 4 B 176 ALA ARG ALA GLU ALA PHE LEU LYS GLU LYS LEU GLN GLY SEQRES 5 B 176 ASP PRO TRP ASP ALA ARG TRP HIS LEU LEU ALA ILE VAL SEQRES 6 B 176 ARG ARG SER ASP GLU ALA VAL VAL GLY SER CYS ARG ILE SEQRES 7 B 176 GLU PHE GLY LYS GLN THR ALA SER LEU ARG PHE HIS MSE SEQRES 8 B 176 ALA PRO TRP LEU ASP ASP ALA ASP VAL LEU ARG ALA GLU SEQRES 9 B 176 ALA LEU GLU LEU VAL VAL PRO TRP LEU ARG ASP GLU HIS SEQRES 10 B 176 GLU LEU LEU VAL ILE THR VAL GLU ILE ALA ALA ASP GLU SEQRES 11 B 176 GLN ARG THR LEU ALA ALA ALA GLU ALA ALA GLY LEU LYS SEQRES 12 B 176 ALA ALA VAL ARG MSE ARG GLU ALA ILE ALA ARG ALA GLY SEQRES 13 B 176 HIS ARG VAL ASP LEU LEU ILE TYR GLN ALA VAL ASP PRO SEQRES 14 B 176 LYS VAL GLU ALA ASP HIS ALA MODRES 3SHP MSE A 1 MET SELENOMETHIONINE MODRES 3SHP MSE A 16 MET SELENOMETHIONINE MODRES 3SHP MSE A 88 MET SELENOMETHIONINE MODRES 3SHP MSE A 145 MET SELENOMETHIONINE MODRES 3SHP MSE B 1 MET SELENOMETHIONINE MODRES 3SHP MSE B 16 MET SELENOMETHIONINE MODRES 3SHP MSE B 88 MET SELENOMETHIONINE MODRES 3SHP MSE B 145 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 16 8 HET MSE A 88 8 HET MSE A 145 8 HET MSE B 1 8 HET MSE B 16 8 HET MSE B 88 8 HET MSE B 145 8 HET SRT B 174 10 HETNAM MSE SELENOMETHIONINE HETNAM SRT S,R MESO-TARTARIC ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SRT C4 H6 O6 FORMUL 4 HOH *258(H2 O) HELIX 1 1 VAL A 17 ALA A 24 1 8 HELIX 2 2 ALA A 25 TRP A 27 5 3 HELIX 3 3 LYS A 44 GLY A 49 5 6 HELIX 4 4 ASP A 50 ALA A 54 5 5 HELIX 5 5 ASP A 94 HIS A 114 1 21 HELIX 6 6 GLU A 127 ALA A 137 1 11 HELIX 7 7 VAL B 17 ALA B 25 1 9 HELIX 8 8 ASP B 94 GLU B 113 1 20 HELIX 9 9 GLU B 127 ALA B 137 1 11 SHEET 1 A 8 LEU A 6 THR A 7 0 SHEET 2 A 8 VAL A 11 ALA A 15 -1 O LEU A 13 N LEU A 6 SHEET 3 A 8 ARG A 55 ARG A 63 -1 O VAL A 62 N TYR A 12 SHEET 4 A 8 VAL A 69 PHE A 77 -1 O PHE A 77 N ARG A 55 SHEET 5 A 8 THR A 81 MSE A 88 -1 O SER A 83 N GLU A 76 SHEET 6 A 8 VAL A 118 ALA A 124 1 O THR A 120 N LEU A 84 SHEET 7 A 8 HIS A 154 VAL A 164 -1 O TYR A 161 N VAL A 121 SHEET 8 A 8 LYS A 140 ARG A 151 -1 N ALA A 142 O ILE A 160 SHEET 1 B 8 TYR B 5 THR B 7 0 SHEET 2 B 8 VAL B 11 ALA B 15 -1 O LEU B 13 N LEU B 6 SHEET 3 B 8 TRP B 56 ARG B 63 -1 O VAL B 62 N TYR B 12 SHEET 4 B 8 VAL B 69 PHE B 77 -1 O ILE B 75 N HIS B 57 SHEET 5 B 8 THR B 81 MSE B 88 -1 O ARG B 85 N ARG B 74 SHEET 6 B 8 VAL B 118 ALA B 124 1 O THR B 120 N LEU B 84 SHEET 7 B 8 ARG B 155 VAL B 164 -1 O TYR B 161 N VAL B 121 SHEET 8 B 8 LYS B 140 ALA B 150 -1 N ALA B 142 O ILE B 160 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C ALA A 15 N MSE A 16 1555 1555 1.33 LINK C MSE A 16 N VAL A 17 1555 1555 1.33 LINK C HIS A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N ALA A 89 1555 1555 1.33 LINK C ARG A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N ARG A 146 1555 1555 1.33 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK C ALA B 15 N MSE B 16 1555 1555 1.33 LINK C MSE B 16 N VAL B 17 1555 1555 1.32 LINK C HIS B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N ALA B 89 1555 1555 1.32 LINK C AARG B 144 N MSE B 145 1555 1555 1.32 LINK C BARG B 144 N MSE B 145 1555 1555 1.32 LINK C MSE B 145 N ARG B 146 1555 1555 1.32 CISPEP 1 ASP B 50 PRO B 51 0 -0.85 SITE 1 AC1 8 PHE A 32 TRP A 56 HOH A 290 ASP B 94 SITE 2 AC1 8 HOH B 197 HOH B 203 HOH B 206 HOH B 216 CRYST1 89.196 89.196 115.726 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008641 0.00000 HETATM 1 N MSE A 1 17.923 35.298 26.845 1.00 61.08 N ANISOU 1 N MSE A 1 7313 8730 7164 319 555 -21 N HETATM 2 CA MSE A 1 19.150 34.455 26.693 1.00 60.94 C ANISOU 2 CA MSE A 1 7369 8665 7119 308 593 -27 C HETATM 3 C MSE A 1 20.245 34.652 27.769 1.00 60.77 C ANISOU 3 C MSE A 1 7327 8638 7125 297 598 -102 C HETATM 4 O MSE A 1 21.220 33.887 27.845 1.00 60.70 O ANISOU 4 O MSE A 1 7256 8597 7208 260 650 -95 O HETATM 5 CB MSE A 1 19.729 34.617 25.299 1.00 61.16 C ANISOU 5 CB MSE A 1 7443 8663 7132 290 597 54 C HETATM 6 CG MSE A 1 19.257 33.540 24.308 1.00 60.40 C ANISOU 6 CG MSE A 1 7391 8472 7083 198 640 291 C HETATM 7 SE MSE A 1 20.827 32.717 23.493 0.75 57.78 SE ANISOU 7 SE MSE A 1 7285 8093 6572 -92 955 952 SE HETATM 8 CE MSE A 1 22.050 34.245 23.674 1.00 58.44 C ANISOU 8 CE MSE A 1 6953 8210 7039 51 652 592 C