data_3SI8
#
_entry.id 3SI8
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3SI8 pdb_00003si8 10.2210/pdb3si8/pdb
NDB NA1176 ? ?
RCSB RCSB066234 ? ?
WWPDB D_1000066234 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-08-03
2 'Structure model' 1 1 2023-09-13
3 'Structure model' 1 2 2024-03-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Derived calculations'
4 2 'Structure model' 'Refinement description'
5 2 'Structure model' 'Structure summary'
6 3 'Structure model' 'Source and taxonomy'
7 3 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp
2 2 'Structure model' chem_comp_atom
3 2 'Structure model' chem_comp_bond
4 2 'Structure model' database_2
5 2 'Structure model' pdbx_initial_refinement_model
6 2 'Structure model' pdbx_struct_conn_angle
7 2 'Structure model' struct_conn
8 2 'Structure model' struct_ref_seq_dif
9 2 'Structure model' struct_site
10 3 'Structure model' entity
11 3 'Structure model' pdbx_entity_src_syn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_chem_comp.pdbx_synonyms'
2 2 'Structure model' '_database_2.pdbx_DOI'
3 2 'Structure model' '_database_2.pdbx_database_accession'
4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id'
12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'
13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id'
15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id'
16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
21 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
22 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
23 2 'Structure model' '_pdbx_struct_conn_angle.value'
24 2 'Structure model' '_struct_conn.pdbx_dist_value'
25 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
26 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
27 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
28 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
29 2 'Structure model' '_struct_conn.ptnr1_label_asym_id'
30 2 'Structure model' '_struct_conn.ptnr1_label_atom_id'
31 2 'Structure model' '_struct_conn.ptnr1_label_comp_id'
32 2 'Structure model' '_struct_conn.ptnr1_label_seq_id'
33 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
34 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
35 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
36 2 'Structure model' '_struct_conn.ptnr2_label_asym_id'
37 2 'Structure model' '_struct_conn.ptnr2_label_atom_id'
38 2 'Structure model' '_struct_conn.ptnr2_label_comp_id'
39 2 'Structure model' '_struct_conn.ptnr2_label_seq_id'
40 2 'Structure model' '_struct_ref_seq_dif.details'
41 2 'Structure model' '_struct_site.pdbx_auth_asym_id'
42 2 'Structure model' '_struct_site.pdbx_auth_comp_id'
43 2 'Structure model' '_struct_site.pdbx_auth_seq_id'
44 3 'Structure model' '_entity.details'
#
_pdbx_database_PDB_obs_spr.id SPRSDE
_pdbx_database_PDB_obs_spr.date 2011-08-03
_pdbx_database_PDB_obs_spr.pdb_id 3SI8
_pdbx_database_PDB_obs_spr.replace_pdb_id 3MR4
_pdbx_database_PDB_obs_spr.details ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3SI8
_pdbx_database_status.recvd_initial_deposition_date 2011-06-17
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3MR2 . unspecified
PDB 3MR3 . unspecified
PDB 3MR5 . unspecified
PDB 3MR6 . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Biertumpfel, C.' 1
'Zhao, Y.' 2
'Kondo, Y.' 3
'Ramon-Maiques, S.' 4
'Gregory, M.' 5
'Lee, J.Y.' 6
'Masutani, C.' 7
'Lehmann, A.R.' 8
'Hanaoka, F.' 9
'Yang, W.' 10
#
_citation.id primary
_citation.title 'Structure and mechanism of human DNA polymerase eta.'
_citation.journal_abbrev Nature
_citation.journal_volume 465
_citation.page_first 1044
_citation.page_last 1048
_citation.year 2010
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 20577208
_citation.pdbx_database_id_DOI 10.1038/nature09196
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Biertumpfel, C.' 1 ?
primary 'Zhao, Y.' 2 ?
primary 'Kondo, Y.' 3 ?
primary 'Ramon-Maiques, S.' 4 ?
primary 'Gregory, M.' 5 ?
primary 'Lee, J.Y.' 6 ?
primary 'Masutani, C.' 7 ?
primary 'Lehmann, A.R.' 8 ?
primary 'Hanaoka, F.' 9 ?
primary 'Yang, W.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'DNA polymerase eta' 48617.707 1
2.7.7.7 ? 'unp residues 1-432' ?
2 polymer syn
;DNA (5'-D(*TP*A*AP*CP*(TTD)P*AP*TP*GP*AP*CP*GP*C)-3')
;
3950.599 1 ? ? ? 'DNA template (chain T)'
3 polymer syn
;DNA (5'-D(*TP*GP*CP*GP*TP*CP*AP*TP*A)-3')
;
2730.810 1 ? ? ? 'DNA primer (chain P)'
4 non-polymer syn "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine" 490.197 1 ? ?
? "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine"
5 non-polymer syn GLYCEROL 92.094 8 ? ?
? ?
6 non-polymer syn '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' 251.242 1 ? ?
? ?
7 non-polymer syn 2,3-DIHYDROXY-1,4-DITHIOBUTANE 154.251 2 ? ?
? ?
8 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ?
? ?
9 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ?
? ?
10 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ?
? ?
11 water nat water 18.015 126 ? ?
? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'RAD30 homolog A, Xeroderma pigmentosum variant type protein'
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;GPHMATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLL
AQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTA
EETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTL
VSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPK
TIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSH
DAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSAS
;
;GPHMATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLL
AQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTA
EETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTL
VSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPK
TIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSH
DAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSAS
;
A ?
2 polydeoxyribonucleotide no yes '(DT)(DA)(DA)(DC)(TTD)(DA)(DT)(DG)(DA)(DC)(DG)(DC)' TAACTATGACGC T ?
3 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DG)(DT)(DC)(DA)(DT)(DA)' TGCGTCATA P ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
4 "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine" DZ4
5 GLYCEROL GOL
6 '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' 3D1
7 2,3-DIHYDROXY-1,4-DITHIOBUTANE DTT
8 1,2-ETHANEDIOL EDO
9 'MAGNESIUM ION' MG
10 'COBALT (II) ION' CO
11 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 PRO n
1 3 HIS n
1 4 MET n
1 5 ALA n
1 6 THR n
1 7 GLY n
1 8 GLN n
1 9 ASP n
1 10 ARG n
1 11 VAL n
1 12 VAL n
1 13 ALA n
1 14 LEU n
1 15 VAL n
1 16 ASP n
1 17 MET n
1 18 ASP n
1 19 CYS n
1 20 PHE n
1 21 PHE n
1 22 VAL n
1 23 GLN n
1 24 VAL n
1 25 GLU n
1 26 GLN n
1 27 ARG n
1 28 GLN n
1 29 ASN n
1 30 PRO n
1 31 HIS n
1 32 LEU n
1 33 ARG n
1 34 ASN n
1 35 LYS n
1 36 PRO n
1 37 CYS n
1 38 ALA n
1 39 VAL n
1 40 VAL n
1 41 GLN n
1 42 TYR n
1 43 LYS n
1 44 SER n
1 45 TRP n
1 46 LYS n
1 47 GLY n
1 48 GLY n
1 49 GLY n
1 50 ILE n
1 51 ILE n
1 52 ALA n
1 53 VAL n
1 54 SER n
1 55 TYR n
1 56 GLU n
1 57 ALA n
1 58 ARG n
1 59 ALA n
1 60 PHE n
1 61 GLY n
1 62 VAL n
1 63 THR n
1 64 ARG n
1 65 SER n
1 66 MET n
1 67 TRP n
1 68 ALA n
1 69 ASP n
1 70 ASP n
1 71 ALA n
1 72 LYS n
1 73 LYS n
1 74 LEU n
1 75 CYS n
1 76 PRO n
1 77 ASP n
1 78 LEU n
1 79 LEU n
1 80 LEU n
1 81 ALA n
1 82 GLN n
1 83 VAL n
1 84 ARG n
1 85 GLU n
1 86 SER n
1 87 ARG n
1 88 GLY n
1 89 LYS n
1 90 ALA n
1 91 ASN n
1 92 LEU n
1 93 THR n
1 94 LYS n
1 95 TYR n
1 96 ARG n
1 97 GLU n
1 98 ALA n
1 99 SER n
1 100 VAL n
1 101 GLU n
1 102 VAL n
1 103 MET n
1 104 GLU n
1 105 ILE n
1 106 MET n
1 107 SER n
1 108 ARG n
1 109 PHE n
1 110 ALA n
1 111 VAL n
1 112 ILE n
1 113 GLU n
1 114 ARG n
1 115 ALA n
1 116 SER n
1 117 ILE n
1 118 ASP n
1 119 GLU n
1 120 ALA n
1 121 TYR n
1 122 VAL n
1 123 ASP n
1 124 LEU n
1 125 THR n
1 126 SER n
1 127 ALA n
1 128 VAL n
1 129 GLN n
1 130 GLU n
1 131 ARG n
1 132 LEU n
1 133 GLN n
1 134 LYS n
1 135 LEU n
1 136 GLN n
1 137 GLY n
1 138 GLN n
1 139 PRO n
1 140 ILE n
1 141 SER n
1 142 ALA n
1 143 ASP n
1 144 LEU n
1 145 LEU n
1 146 PRO n
1 147 SER n
1 148 THR n
1 149 TYR n
1 150 ILE n
1 151 GLU n
1 152 GLY n
1 153 LEU n
1 154 PRO n
1 155 GLN n
1 156 GLY n
1 157 PRO n
1 158 THR n
1 159 THR n
1 160 ALA n
1 161 GLU n
1 162 GLU n
1 163 THR n
1 164 VAL n
1 165 GLN n
1 166 LYS n
1 167 GLU n
1 168 GLY n
1 169 MET n
1 170 ARG n
1 171 LYS n
1 172 GLN n
1 173 GLY n
1 174 LEU n
1 175 PHE n
1 176 GLN n
1 177 TRP n
1 178 LEU n
1 179 ASP n
1 180 SER n
1 181 LEU n
1 182 GLN n
1 183 ILE n
1 184 ASP n
1 185 ASN n
1 186 LEU n
1 187 THR n
1 188 SER n
1 189 PRO n
1 190 ASP n
1 191 LEU n
1 192 GLN n
1 193 LEU n
1 194 THR n
1 195 VAL n
1 196 GLY n
1 197 ALA n
1 198 VAL n
1 199 ILE n
1 200 VAL n
1 201 GLU n
1 202 GLU n
1 203 MET n
1 204 ARG n
1 205 ALA n
1 206 ALA n
1 207 ILE n
1 208 GLU n
1 209 ARG n
1 210 GLU n
1 211 THR n
1 212 GLY n
1 213 PHE n
1 214 GLN n
1 215 CYS n
1 216 SER n
1 217 ALA n
1 218 GLY n
1 219 ILE n
1 220 SER n
1 221 HIS n
1 222 ASN n
1 223 LYS n
1 224 VAL n
1 225 LEU n
1 226 ALA n
1 227 LYS n
1 228 LEU n
1 229 ALA n
1 230 CYS n
1 231 GLY n
1 232 LEU n
1 233 ASN n
1 234 LYS n
1 235 PRO n
1 236 ASN n
1 237 ARG n
1 238 GLN n
1 239 THR n
1 240 LEU n
1 241 VAL n
1 242 SER n
1 243 HIS n
1 244 GLY n
1 245 SER n
1 246 VAL n
1 247 PRO n
1 248 GLN n
1 249 LEU n
1 250 PHE n
1 251 SER n
1 252 GLN n
1 253 MET n
1 254 PRO n
1 255 ILE n
1 256 ARG n
1 257 LYS n
1 258 ILE n
1 259 ARG n
1 260 SER n
1 261 LEU n
1 262 GLY n
1 263 GLY n
1 264 LYS n
1 265 LEU n
1 266 GLY n
1 267 ALA n
1 268 SER n
1 269 VAL n
1 270 ILE n
1 271 GLU n
1 272 ILE n
1 273 LEU n
1 274 GLY n
1 275 ILE n
1 276 GLU n
1 277 TYR n
1 278 MET n
1 279 GLY n
1 280 GLU n
1 281 LEU n
1 282 THR n
1 283 GLN n
1 284 PHE n
1 285 THR n
1 286 GLU n
1 287 SER n
1 288 GLN n
1 289 LEU n
1 290 GLN n
1 291 SER n
1 292 HIS n
1 293 PHE n
1 294 GLY n
1 295 GLU n
1 296 LYS n
1 297 ASN n
1 298 GLY n
1 299 SER n
1 300 TRP n
1 301 LEU n
1 302 TYR n
1 303 ALA n
1 304 MET n
1 305 CYS n
1 306 ARG n
1 307 GLY n
1 308 ILE n
1 309 GLU n
1 310 HIS n
1 311 ASP n
1 312 PRO n
1 313 VAL n
1 314 LYS n
1 315 PRO n
1 316 ARG n
1 317 GLN n
1 318 LEU n
1 319 PRO n
1 320 LYS n
1 321 THR n
1 322 ILE n
1 323 GLY n
1 324 CYS n
1 325 SER n
1 326 LYS n
1 327 ASN n
1 328 PHE n
1 329 PRO n
1 330 GLY n
1 331 LYS n
1 332 THR n
1 333 ALA n
1 334 LEU n
1 335 ALA n
1 336 THR n
1 337 ARG n
1 338 GLU n
1 339 GLN n
1 340 VAL n
1 341 GLN n
1 342 TRP n
1 343 TRP n
1 344 LEU n
1 345 LEU n
1 346 GLN n
1 347 LEU n
1 348 ALA n
1 349 GLN n
1 350 GLU n
1 351 LEU n
1 352 GLU n
1 353 GLU n
1 354 ARG n
1 355 LEU n
1 356 THR n
1 357 LYS n
1 358 ASP n
1 359 ARG n
1 360 ASN n
1 361 ASP n
1 362 ASN n
1 363 ASP n
1 364 ARG n
1 365 VAL n
1 366 ALA n
1 367 THR n
1 368 GLN n
1 369 LEU n
1 370 VAL n
1 371 VAL n
1 372 SER n
1 373 ILE n
1 374 ARG n
1 375 VAL n
1 376 GLN n
1 377 GLY n
1 378 ASP n
1 379 LYS n
1 380 ARG n
1 381 LEU n
1 382 SER n
1 383 SER n
1 384 LEU n
1 385 ARG n
1 386 ARG n
1 387 CYS n
1 388 CYS n
1 389 ALA n
1 390 LEU n
1 391 THR n
1 392 ARG n
1 393 TYR n
1 394 ASP n
1 395 ALA n
1 396 HIS n
1 397 LYS n
1 398 MET n
1 399 SER n
1 400 HIS n
1 401 ASP n
1 402 ALA n
1 403 PHE n
1 404 THR n
1 405 VAL n
1 406 ILE n
1 407 LYS n
1 408 ASN n
1 409 CYS n
1 410 ASN n
1 411 THR n
1 412 SER n
1 413 GLY n
1 414 ILE n
1 415 GLN n
1 416 THR n
1 417 GLU n
1 418 TRP n
1 419 SER n
1 420 PRO n
1 421 PRO n
1 422 LEU n
1 423 THR n
1 424 MET n
1 425 LEU n
1 426 PHE n
1 427 LEU n
1 428 CYS n
1 429 ALA n
1 430 THR n
1 431 LYS n
1 432 PHE n
1 433 SER n
1 434 ALA n
1 435 SER n
2 1 DT n
2 2 DA n
2 3 DA n
2 4 DC n
2 5 TTD n
2 6 DA n
2 7 DT n
2 8 DG n
2 9 DA n
2 10 DC n
2 11 DG n
2 12 DC n
3 1 DT n
3 2 DG n
3 3 DC n
3 4 DG n
3 5 DT n
3 6 DC n
3 7 DA n
3 8 DT n
3 9 DA n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'POLH, RAD30, RAD30A, XPV'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain 'chemically synthesized'
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) pLysS'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type pET28a
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
2 1 sample ? ? ? ? ? 'DNA oligonucleotide with thymine dimer (cyclobutane pyrimidine dimer, CPD)'
3 1 sample ? ? ? ? ? 'DNA oligonucleotide'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
3D1 non-polymer . '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol'
"2'-DEOXYADENOSINE" 'C10 H13 N5 O3' 251.242
ALA 'L-peptide linking' y ALANINE ?
'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ?
'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ?
'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ?
'C4 H7 N O4' 133.103
CO non-polymer . 'COBALT (II) ION' ? 'Co 2'
58.933
CYS 'L-peptide linking' y CYSTEINE ?
'C3 H7 N O2 S' 121.158
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ?
'C10 H15 N2 O8 P' 322.208
DTT non-polymer . 2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL 'C4 H10 O2 S2' 154.251
DZ4 non-polymer . "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine" ?
'C10 H17 N6 O11 P3' 490.197
EDO non-polymer . 1,2-ETHANEDIOL
'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068
GLN 'L-peptide linking' y GLUTAMINE ?
'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ?
'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ?
'C2 H5 N O2' 75.067
GOL non-polymer . GLYCEROL
'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094
HIS 'L-peptide linking' y HISTIDINE ?
'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O'
18.015
ILE 'L-peptide linking' y ISOLEUCINE ?
'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ?
'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ?
'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ?
'C5 H11 N O2 S' 149.211
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2'
24.305
PHE 'L-peptide linking' y PHENYLALANINE ?
'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ?
'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ?
'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ?
'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ?
'C11 H12 N2 O2' 204.225
TTD 'DNA linking' n 'CIS-SYN CYCLOBUTANE THYMINE DIMER'
;[(3S,4S,9S,10R,12R,15AR,18BS,18CS)-3,7-DIHYDROXY-15A,15B-DIMETHYL-7-OXIDO-13,15,16,18-TETRAOXOHEXADECAHYDRO-1H-1,4-EPOX Y-9,12-METHANO-6,8,11-TRIOXA-12A,14,17,18A-TETRAAZA-7-PHOSPHACYCLOHEXADECA[1,2,3,4-DEF]BIPHENYLEN-10-YL]METHYL DIHYDROGEN PHOSPHATE
;
'C20 H28 N4 O15 P2' 626.402
TYR 'L-peptide linking' y TYROSINE ?
'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ?
'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 -2 ? ? ? A . n
A 1 2 PRO 2 -1 -1 PRO PRO A . n
A 1 3 HIS 3 0 0 HIS HIS A . n
A 1 4 MET 4 1 1 MET MET A . n
A 1 5 ALA 5 2 2 ALA ALA A . n
A 1 6 THR 6 3 3 THR THR A . n
A 1 7 GLY 7 4 4 GLY GLY A . n
A 1 8 GLN 8 5 5 GLN GLN A . n
A 1 9 ASP 9 6 6 ASP ASP A . n
A 1 10 ARG 10 7 7 ARG ARG A . n
A 1 11 VAL 11 8 8 VAL VAL A . n
A 1 12 VAL 12 9 9 VAL VAL A . n
A 1 13 ALA 13 10 10 ALA ALA A . n
A 1 14 LEU 14 11 11 LEU LEU A . n
A 1 15 VAL 15 12 12 VAL VAL A . n
A 1 16 ASP 16 13 13 ASP ASP A . n
A 1 17 MET 17 14 14 MET MET A . n
A 1 18 ASP 18 15 15 ASP ASP A . n
A 1 19 CYS 19 16 16 CYS CYS A . n
A 1 20 PHE 20 17 17 PHE PHE A . n
A 1 21 PHE 21 18 18 PHE PHE A . n
A 1 22 VAL 22 19 19 VAL VAL A . n
A 1 23 GLN 23 20 20 GLN GLN A . n
A 1 24 VAL 24 21 21 VAL VAL A . n
A 1 25 GLU 25 22 22 GLU GLU A . n
A 1 26 GLN 26 23 23 GLN GLN A . n
A 1 27 ARG 27 24 24 ARG ARG A . n
A 1 28 GLN 28 25 25 GLN GLN A . n
A 1 29 ASN 29 26 26 ASN ASN A . n
A 1 30 PRO 30 27 27 PRO PRO A . n
A 1 31 HIS 31 28 28 HIS HIS A . n
A 1 32 LEU 32 29 29 LEU LEU A . n
A 1 33 ARG 33 30 30 ARG ARG A . n
A 1 34 ASN 34 31 31 ASN ASN A . n
A 1 35 LYS 35 32 32 LYS LYS A . n
A 1 36 PRO 36 33 33 PRO PRO A . n
A 1 37 CYS 37 34 34 CYS CYS A . n
A 1 38 ALA 38 35 35 ALA ALA A . n
A 1 39 VAL 39 36 36 VAL VAL A . n
A 1 40 VAL 40 37 37 VAL VAL A . n
A 1 41 GLN 41 38 38 GLN GLN A . n
A 1 42 TYR 42 39 39 TYR TYR A . n
A 1 43 LYS 43 40 40 LYS LYS A . n
A 1 44 SER 44 41 41 SER SER A . n
A 1 45 TRP 45 42 42 TRP TRP A . n
A 1 46 LYS 46 43 43 LYS LYS A . n
A 1 47 GLY 47 44 44 GLY GLY A . n
A 1 48 GLY 48 45 45 GLY GLY A . n
A 1 49 GLY 49 46 46 GLY GLY A . n
A 1 50 ILE 50 47 47 ILE ILE A . n
A 1 51 ILE 51 48 48 ILE ILE A . n
A 1 52 ALA 52 49 49 ALA ALA A . n
A 1 53 VAL 53 50 50 VAL VAL A . n
A 1 54 SER 54 51 51 SER SER A . n
A 1 55 TYR 55 52 52 TYR TYR A . n
A 1 56 GLU 56 53 53 GLU GLU A . n
A 1 57 ALA 57 54 54 ALA ALA A . n
A 1 58 ARG 58 55 55 ARG ARG A . n
A 1 59 ALA 59 56 56 ALA ALA A . n
A 1 60 PHE 60 57 57 PHE PHE A . n
A 1 61 GLY 61 58 58 GLY GLY A . n
A 1 62 VAL 62 59 59 VAL VAL A . n
A 1 63 THR 63 60 60 THR THR A . n
A 1 64 ARG 64 61 61 ARG ARG A . n
A 1 65 SER 65 62 62 SER SER A . n
A 1 66 MET 66 63 63 MET MET A . n
A 1 67 TRP 67 64 64 TRP TRP A . n
A 1 68 ALA 68 65 65 ALA ALA A . n
A 1 69 ASP 69 66 66 ASP ASP A . n
A 1 70 ASP 70 67 67 ASP ASP A . n
A 1 71 ALA 71 68 68 ALA ALA A . n
A 1 72 LYS 72 69 69 LYS LYS A . n
A 1 73 LYS 73 70 70 LYS LYS A . n
A 1 74 LEU 74 71 71 LEU LEU A . n
A 1 75 CYS 75 72 72 CYS CYS A . n
A 1 76 PRO 76 73 73 PRO PRO A . n
A 1 77 ASP 77 74 74 ASP ASP A . n
A 1 78 LEU 78 75 75 LEU LEU A . n
A 1 79 LEU 79 76 76 LEU LEU A . n
A 1 80 LEU 80 77 77 LEU LEU A . n
A 1 81 ALA 81 78 78 ALA ALA A . n
A 1 82 GLN 82 79 79 GLN GLN A . n
A 1 83 VAL 83 80 80 VAL VAL A . n
A 1 84 ARG 84 81 81 ARG ARG A . n
A 1 85 GLU 85 82 82 GLU GLU A . n
A 1 86 SER 86 83 83 SER SER A . n
A 1 87 ARG 87 84 84 ARG ARG A . n
A 1 88 GLY 88 85 85 GLY GLY A . n
A 1 89 LYS 89 86 86 LYS LYS A . n
A 1 90 ALA 90 87 87 ALA ALA A . n
A 1 91 ASN 91 88 88 ASN ASN A . n
A 1 92 LEU 92 89 89 LEU LEU A . n
A 1 93 THR 93 90 90 THR THR A . n
A 1 94 LYS 94 91 91 LYS LYS A . n
A 1 95 TYR 95 92 92 TYR TYR A . n
A 1 96 ARG 96 93 93 ARG ARG A . n
A 1 97 GLU 97 94 94 GLU GLU A . n
A 1 98 ALA 98 95 95 ALA ALA A . n
A 1 99 SER 99 96 96 SER SER A . n
A 1 100 VAL 100 97 97 VAL VAL A . n
A 1 101 GLU 101 98 98 GLU GLU A . n
A 1 102 VAL 102 99 99 VAL VAL A . n
A 1 103 MET 103 100 100 MET MET A . n
A 1 104 GLU 104 101 101 GLU GLU A . n
A 1 105 ILE 105 102 102 ILE ILE A . n
A 1 106 MET 106 103 103 MET MET A . n
A 1 107 SER 107 104 104 SER SER A . n
A 1 108 ARG 108 105 105 ARG ARG A . n
A 1 109 PHE 109 106 106 PHE PHE A . n
A 1 110 ALA 110 107 107 ALA ALA A . n
A 1 111 VAL 111 108 108 VAL VAL A . n
A 1 112 ILE 112 109 109 ILE ILE A . n
A 1 113 GLU 113 110 110 GLU GLU A . n
A 1 114 ARG 114 111 111 ARG ARG A . n
A 1 115 ALA 115 112 112 ALA ALA A . n
A 1 116 SER 116 113 113 SER SER A . n
A 1 117 ILE 117 114 114 ILE ILE A . n
A 1 118 ASP 118 115 115 ASP ASP A . n
A 1 119 GLU 119 116 116 GLU GLU A . n
A 1 120 ALA 120 117 117 ALA ALA A . n
A 1 121 TYR 121 118 118 TYR TYR A . n
A 1 122 VAL 122 119 119 VAL VAL A . n
A 1 123 ASP 123 120 120 ASP ASP A . n
A 1 124 LEU 124 121 121 LEU LEU A . n
A 1 125 THR 125 122 122 THR THR A . n
A 1 126 SER 126 123 123 SER SER A . n
A 1 127 ALA 127 124 124 ALA ALA A . n
A 1 128 VAL 128 125 125 VAL VAL A . n
A 1 129 GLN 129 126 126 GLN GLN A . n
A 1 130 GLU 130 127 127 GLU GLU A . n
A 1 131 ARG 131 128 128 ARG ARG A . n
A 1 132 LEU 132 129 129 LEU LEU A . n
A 1 133 GLN 133 130 130 GLN GLN A . n
A 1 134 LYS 134 131 131 LYS LYS A . n
A 1 135 LEU 135 132 132 LEU LEU A . n
A 1 136 GLN 136 133 133 GLN GLN A . n
A 1 137 GLY 137 134 134 GLY GLY A . n
A 1 138 GLN 138 135 135 GLN GLN A . n
A 1 139 PRO 139 136 136 PRO PRO A . n
A 1 140 ILE 140 137 137 ILE ILE A . n
A 1 141 SER 141 138 138 SER SER A . n
A 1 142 ALA 142 139 139 ALA ALA A . n
A 1 143 ASP 143 140 140 ASP ASP A . n
A 1 144 LEU 144 141 141 LEU LEU A . n
A 1 145 LEU 145 142 142 LEU LEU A . n
A 1 146 PRO 146 143 143 PRO PRO A . n
A 1 147 SER 147 144 144 SER SER A . n
A 1 148 THR 148 145 145 THR THR A . n
A 1 149 TYR 149 146 146 TYR TYR A . n
A 1 150 ILE 150 147 147 ILE ILE A . n
A 1 151 GLU 151 148 148 GLU GLU A . n
A 1 152 GLY 152 149 149 GLY GLY A . n
A 1 153 LEU 153 150 150 LEU LEU A . n
A 1 154 PRO 154 151 151 PRO PRO A . n
A 1 155 GLN 155 152 152 GLN GLN A . n
A 1 156 GLY 156 153 153 GLY GLY A . n
A 1 157 PRO 157 154 ? ? ? A . n
A 1 158 THR 158 155 ? ? ? A . n
A 1 159 THR 159 156 ? ? ? A . n
A 1 160 ALA 160 157 ? ? ? A . n
A 1 161 GLU 161 158 ? ? ? A . n
A 1 162 GLU 162 159 ? ? ? A . n
A 1 163 THR 163 160 ? ? ? A . n
A 1 164 VAL 164 161 161 VAL ALA A . n
A 1 165 GLN 165 162 162 GLN ALA A . n
A 1 166 LYS 166 163 163 LYS LYS A . n
A 1 167 GLU 167 164 164 GLU GLU A . n
A 1 168 GLY 168 165 165 GLY GLY A . n
A 1 169 MET 169 166 166 MET MET A . n
A 1 170 ARG 170 167 167 ARG ARG A . n
A 1 171 LYS 171 168 168 LYS LYS A . n
A 1 172 GLN 172 169 169 GLN GLN A . n
A 1 173 GLY 173 170 170 GLY GLY A . n
A 1 174 LEU 174 171 171 LEU LEU A . n
A 1 175 PHE 175 172 172 PHE PHE A . n
A 1 176 GLN 176 173 173 GLN GLN A . n
A 1 177 TRP 177 174 174 TRP TRP A . n
A 1 178 LEU 178 175 175 LEU LEU A . n
A 1 179 ASP 179 176 176 ASP ASP A . n
A 1 180 SER 180 177 177 SER SER A . n
A 1 181 LEU 181 178 178 LEU LEU A . n
A 1 182 GLN 182 179 179 GLN GLN A . n
A 1 183 ILE 183 180 180 ILE ILE A . n
A 1 184 ASP 184 181 181 ASP ASP A . n
A 1 185 ASN 185 182 182 ASN ASN A . n
A 1 186 LEU 186 183 183 LEU LEU A . n
A 1 187 THR 187 184 184 THR THR A . n
A 1 188 SER 188 185 185 SER SER A . n
A 1 189 PRO 189 186 186 PRO PRO A . n
A 1 190 ASP 190 187 187 ASP ASP A . n
A 1 191 LEU 191 188 188 LEU LEU A . n
A 1 192 GLN 192 189 189 GLN GLN A . n
A 1 193 LEU 193 190 190 LEU LEU A . n
A 1 194 THR 194 191 191 THR THR A . n
A 1 195 VAL 195 192 192 VAL VAL A . n
A 1 196 GLY 196 193 193 GLY GLY A . n
A 1 197 ALA 197 194 194 ALA ALA A . n
A 1 198 VAL 198 195 195 VAL VAL A . n
A 1 199 ILE 199 196 196 ILE ILE A . n
A 1 200 VAL 200 197 197 VAL VAL A . n
A 1 201 GLU 201 198 198 GLU GLU A . n
A 1 202 GLU 202 199 199 GLU GLU A . n
A 1 203 MET 203 200 200 MET MET A . n
A 1 204 ARG 204 201 201 ARG ARG A . n
A 1 205 ALA 205 202 202 ALA ALA A . n
A 1 206 ALA 206 203 203 ALA ALA A . n
A 1 207 ILE 207 204 204 ILE ILE A . n
A 1 208 GLU 208 205 205 GLU GLU A . n
A 1 209 ARG 209 206 206 ARG ARG A . n
A 1 210 GLU 210 207 207 GLU GLU A . n
A 1 211 THR 211 208 208 THR THR A . n
A 1 212 GLY 212 209 209 GLY GLY A . n
A 1 213 PHE 213 210 210 PHE PHE A . n
A 1 214 GLN 214 211 211 GLN GLN A . n
A 1 215 CYS 215 212 212 CYS CYS A . n
A 1 216 SER 216 213 213 SER SER A . n
A 1 217 ALA 217 214 214 ALA ALA A . n
A 1 218 GLY 218 215 215 GLY GLY A . n
A 1 219 ILE 219 216 216 ILE ILE A . n
A 1 220 SER 220 217 217 SER SER A . n
A 1 221 HIS 221 218 218 HIS HIS A . n
A 1 222 ASN 222 219 219 ASN ASN A . n
A 1 223 LYS 223 220 220 LYS LYS A . n
A 1 224 VAL 224 221 221 VAL VAL A . n
A 1 225 LEU 225 222 222 LEU LEU A . n
A 1 226 ALA 226 223 223 ALA ALA A . n
A 1 227 LYS 227 224 224 LYS LYS A . n
A 1 228 LEU 228 225 225 LEU LEU A . n
A 1 229 ALA 229 226 226 ALA ALA A . n
A 1 230 CYS 230 227 227 CYS CYS A . n
A 1 231 GLY 231 228 228 GLY GLY A . n
A 1 232 LEU 232 229 229 LEU LEU A . n
A 1 233 ASN 233 230 230 ASN ASN A . n
A 1 234 LYS 234 231 231 LYS LYS A . n
A 1 235 PRO 235 232 232 PRO PRO A . n
A 1 236 ASN 236 233 233 ASN ASN A . n
A 1 237 ARG 237 234 234 ARG ARG A . n
A 1 238 GLN 238 235 235 GLN GLN A . n
A 1 239 THR 239 236 236 THR THR A . n
A 1 240 LEU 240 237 237 LEU LEU A . n
A 1 241 VAL 241 238 238 VAL VAL A . n
A 1 242 SER 242 239 239 SER SER A . n
A 1 243 HIS 243 240 240 HIS HIS A . n
A 1 244 GLY 244 241 241 GLY GLY A . n
A 1 245 SER 245 242 242 SER SER A . n
A 1 246 VAL 246 243 243 VAL VAL A . n
A 1 247 PRO 247 244 244 PRO PRO A . n
A 1 248 GLN 248 245 245 GLN GLN A . n
A 1 249 LEU 249 246 246 LEU LEU A . n
A 1 250 PHE 250 247 247 PHE PHE A . n
A 1 251 SER 251 248 248 SER SER A . n
A 1 252 GLN 252 249 249 GLN GLN A . n
A 1 253 MET 253 250 250 MET MET A . n
A 1 254 PRO 254 251 251 PRO PRO A . n
A 1 255 ILE 255 252 252 ILE ILE A . n
A 1 256 ARG 256 253 253 ARG ARG A . n
A 1 257 LYS 257 254 254 LYS LYS A . n
A 1 258 ILE 258 255 255 ILE ILE A . n
A 1 259 ARG 259 256 256 ARG ARG A . n
A 1 260 SER 260 257 257 SER SER A . n
A 1 261 LEU 261 258 258 LEU LEU A . n
A 1 262 GLY 262 259 259 GLY GLY A . n
A 1 263 GLY 263 260 260 GLY GLY A . n
A 1 264 LYS 264 261 261 LYS LYS A . n
A 1 265 LEU 265 262 262 LEU LEU A . n
A 1 266 GLY 266 263 263 GLY GLY A . n
A 1 267 ALA 267 264 264 ALA ALA A . n
A 1 268 SER 268 265 265 SER SER A . n
A 1 269 VAL 269 266 266 VAL VAL A . n
A 1 270 ILE 270 267 267 ILE ILE A . n
A 1 271 GLU 271 268 268 GLU GLU A . n
A 1 272 ILE 272 269 269 ILE ILE A . n
A 1 273 LEU 273 270 270 LEU LEU A . n
A 1 274 GLY 274 271 271 GLY GLY A . n
A 1 275 ILE 275 272 272 ILE ILE A . n
A 1 276 GLU 276 273 273 GLU GLU A . n
A 1 277 TYR 277 274 274 TYR TYR A . n
A 1 278 MET 278 275 275 MET MET A . n
A 1 279 GLY 279 276 276 GLY GLY A . n
A 1 280 GLU 280 277 277 GLU GLU A . n
A 1 281 LEU 281 278 278 LEU LEU A . n
A 1 282 THR 282 279 279 THR THR A . n
A 1 283 GLN 283 280 280 GLN GLN A . n
A 1 284 PHE 284 281 281 PHE PHE A . n
A 1 285 THR 285 282 282 THR THR A . n
A 1 286 GLU 286 283 283 GLU GLU A . n
A 1 287 SER 287 284 284 SER SER A . n
A 1 288 GLN 288 285 285 GLN GLN A . n
A 1 289 LEU 289 286 286 LEU LEU A . n
A 1 290 GLN 290 287 287 GLN GLN A . n
A 1 291 SER 291 288 288 SER SER A . n
A 1 292 HIS 292 289 289 HIS HIS A . n
A 1 293 PHE 293 290 290 PHE PHE A . n
A 1 294 GLY 294 291 291 GLY GLY A . n
A 1 295 GLU 295 292 292 GLU GLU A . n
A 1 296 LYS 296 293 293 LYS LYS A . n
A 1 297 ASN 297 294 294 ASN ASN A . n
A 1 298 GLY 298 295 295 GLY GLY A . n
A 1 299 SER 299 296 296 SER SER A . n
A 1 300 TRP 300 297 297 TRP TRP A . n
A 1 301 LEU 301 298 298 LEU LEU A . n
A 1 302 TYR 302 299 299 TYR TYR A . n
A 1 303 ALA 303 300 300 ALA ALA A . n
A 1 304 MET 304 301 301 MET MET A . n
A 1 305 CYS 305 302 302 CYS CYS A . n
A 1 306 ARG 306 303 303 ARG ARG A . n
A 1 307 GLY 307 304 304 GLY GLY A . n
A 1 308 ILE 308 305 305 ILE ILE A . n
A 1 309 GLU 309 306 306 GLU GLU A . n
A 1 310 HIS 310 307 307 HIS HIS A . n
A 1 311 ASP 311 308 308 ASP ASP A . n
A 1 312 PRO 312 309 309 PRO PRO A . n
A 1 313 VAL 313 310 310 VAL VAL A . n
A 1 314 LYS 314 311 311 LYS LYS A . n
A 1 315 PRO 315 312 312 PRO PRO A . n
A 1 316 ARG 316 313 313 ARG ARG A . n
A 1 317 GLN 317 314 314 GLN GLN A . n
A 1 318 LEU 318 315 315 LEU LEU A . n
A 1 319 PRO 319 316 316 PRO PRO A . n
A 1 320 LYS 320 317 317 LYS LYS A . n
A 1 321 THR 321 318 318 THR THR A . n
A 1 322 ILE 322 319 319 ILE ILE A . n
A 1 323 GLY 323 320 320 GLY GLY A . n
A 1 324 CYS 324 321 321 CYS CYS A . n
A 1 325 SER 325 322 322 SER SER A . n
A 1 326 LYS 326 323 323 LYS LYS A . n
A 1 327 ASN 327 324 324 ASN ASN A . n
A 1 328 PHE 328 325 325 PHE PHE A . n
A 1 329 PRO 329 326 326 PRO PRO A . n
A 1 330 GLY 330 327 327 GLY GLY A . n
A 1 331 LYS 331 328 328 LYS LYS A . n
A 1 332 THR 332 329 329 THR THR A . n
A 1 333 ALA 333 330 330 ALA ALA A . n
A 1 334 LEU 334 331 331 LEU LEU A . n
A 1 335 ALA 335 332 332 ALA ALA A . n
A 1 336 THR 336 333 333 THR THR A . n
A 1 337 ARG 337 334 334 ARG ARG A . n
A 1 338 GLU 338 335 335 GLU GLU A . n
A 1 339 GLN 339 336 336 GLN GLN A . n
A 1 340 VAL 340 337 337 VAL VAL A . n
A 1 341 GLN 341 338 338 GLN GLN A . n
A 1 342 TRP 342 339 339 TRP TRP A . n
A 1 343 TRP 343 340 340 TRP TRP A . n
A 1 344 LEU 344 341 341 LEU LEU A . n
A 1 345 LEU 345 342 342 LEU LEU A . n
A 1 346 GLN 346 343 343 GLN GLN A . n
A 1 347 LEU 347 344 344 LEU LEU A . n
A 1 348 ALA 348 345 345 ALA ALA A . n
A 1 349 GLN 349 346 346 GLN GLN A . n
A 1 350 GLU 350 347 347 GLU GLU A . n
A 1 351 LEU 351 348 348 LEU LEU A . n
A 1 352 GLU 352 349 349 GLU GLU A . n
A 1 353 GLU 353 350 350 GLU GLU A . n
A 1 354 ARG 354 351 351 ARG ARG A . n
A 1 355 LEU 355 352 352 LEU LEU A . n
A 1 356 THR 356 353 353 THR THR A . n
A 1 357 LYS 357 354 354 LYS LYS A . n
A 1 358 ASP 358 355 355 ASP ASP A . n
A 1 359 ARG 359 356 356 ARG ARG A . n
A 1 360 ASN 360 357 357 ASN ASN A . n
A 1 361 ASP 361 358 358 ASP ASP A . n
A 1 362 ASN 362 359 359 ASN ASN A . n
A 1 363 ASP 363 360 360 ASP ASP A . n
A 1 364 ARG 364 361 361 ARG ARG A . n
A 1 365 VAL 365 362 362 VAL VAL A . n
A 1 366 ALA 366 363 363 ALA ALA A . n
A 1 367 THR 367 364 364 THR THR A . n
A 1 368 GLN 368 365 365 GLN GLN A . n
A 1 369 LEU 369 366 366 LEU LEU A . n
A 1 370 VAL 370 367 367 VAL VAL A . n
A 1 371 VAL 371 368 368 VAL VAL A . n
A 1 372 SER 372 369 369 SER SER A . n
A 1 373 ILE 373 370 370 ILE ILE A . n
A 1 374 ARG 374 371 371 ARG ARG A . n
A 1 375 VAL 375 372 372 VAL VAL A . n
A 1 376 GLN 376 373 373 GLN GLN A . n
A 1 377 GLY 377 374 374 GLY GLY A . n
A 1 378 ASP 378 375 375 ASP ASP A . n
A 1 379 LYS 379 376 376 LYS ALA A . n
A 1 380 ARG 380 377 377 ARG ARG A . n
A 1 381 LEU 381 378 378 LEU LEU A . n
A 1 382 SER 382 379 379 SER SER A . n
A 1 383 SER 383 380 380 SER SER A . n
A 1 384 LEU 384 381 381 LEU LEU A . n
A 1 385 ARG 385 382 382 ARG ARG A . n
A 1 386 ARG 386 383 383 ARG ARG A . n
A 1 387 CYS 387 384 384 CYS CYS A . n
A 1 388 CYS 388 385 385 CYS CYS A . n
A 1 389 ALA 389 386 386 ALA ALA A . n
A 1 390 LEU 390 387 387 LEU LEU A . n
A 1 391 THR 391 388 388 THR THR A . n
A 1 392 ARG 392 389 389 ARG ARG A . n
A 1 393 TYR 393 390 390 TYR TYR A . n
A 1 394 ASP 394 391 391 ASP ASP A . n
A 1 395 ALA 395 392 392 ALA ALA A . n
A 1 396 HIS 396 393 393 HIS HIS A . n
A 1 397 LYS 397 394 394 LYS LYS A . n
A 1 398 MET 398 395 395 MET MET A . n
A 1 399 SER 399 396 396 SER SER A . n
A 1 400 HIS 400 397 397 HIS HIS A . n
A 1 401 ASP 401 398 398 ASP ASP A . n
A 1 402 ALA 402 399 399 ALA ALA A . n
A 1 403 PHE 403 400 400 PHE PHE A . n
A 1 404 THR 404 401 401 THR THR A . n
A 1 405 VAL 405 402 402 VAL VAL A . n
A 1 406 ILE 406 403 403 ILE ILE A . n
A 1 407 LYS 407 404 404 LYS LYS A . n
A 1 408 ASN 408 405 405 ASN ASN A . n
A 1 409 CYS 409 406 406 CYS CYS A . n
A 1 410 ASN 410 407 407 ASN ASN A . n
A 1 411 THR 411 408 ? ? ? A . n
A 1 412 SER 412 409 ? ? ? A . n
A 1 413 GLY 413 410 ? ? ? A . n
A 1 414 ILE 414 411 411 ILE ILE A . n
A 1 415 GLN 415 412 412 GLN GLN A . n
A 1 416 THR 416 413 413 THR THR A . n
A 1 417 GLU 417 414 414 GLU GLU A . n
A 1 418 TRP 418 415 415 TRP TRP A . n
A 1 419 SER 419 416 416 SER SER A . n
A 1 420 PRO 420 417 417 PRO PRO A . n
A 1 421 PRO 421 418 418 PRO PRO A . n
A 1 422 LEU 422 419 419 LEU LEU A . n
A 1 423 THR 423 420 420 THR THR A . n
A 1 424 MET 424 421 421 MET MET A . n
A 1 425 LEU 425 422 422 LEU LEU A . n
A 1 426 PHE 426 423 423 PHE PHE A . n
A 1 427 LEU 427 424 424 LEU LEU A . n
A 1 428 CYS 428 425 425 CYS CYS A . n
A 1 429 ALA 429 426 426 ALA ALA A . n
A 1 430 THR 430 427 427 THR THR A . n
A 1 431 LYS 431 428 428 LYS LYS A . n
A 1 432 PHE 432 429 429 PHE PHE A . n
A 1 433 SER 433 430 430 SER SER A . n
A 1 434 ALA 434 431 ? ? ? A . n
A 1 435 SER 435 432 ? ? ? A . n
B 2 1 DT 1 1 ? ? ? T . n
B 2 2 DA 2 2 ? ? ? T . n
B 2 3 DA 3 3 3 DA DA T . n
B 2 4 DC 4 4 4 DC DC T . n
B 2 5 TTD 5 5 5 TTD TTD T . n
B 2 6 DA 6 6 6 DA DA T . n
B 2 7 DT 7 7 7 DT DT T . n
B 2 8 DG 8 8 8 DG DG T . n
B 2 9 DA 9 9 9 DA DA T . n
B 2 10 DC 10 10 10 DC DC T . n
B 2 11 DG 11 11 11 DG DG T . n
B 2 12 DC 12 12 12 DC DC T . n
C 3 1 DT 1 1 1 DT DT P . n
C 3 2 DG 2 2 2 DG DG P . n
C 3 3 DC 3 3 3 DC DC P . n
C 3 4 DG 4 4 4 DG DG P . n
C 3 5 DT 5 5 5 DT DT P . n
C 3 6 DC 6 6 6 DC DC P . n
C 3 7 DA 7 7 7 DA DA P . n
C 3 8 DT 8 8 8 DT DT P . n
C 3 9 DA 9 9 9 DA DA P . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 DZ4 1 433 1 DZ4 DZ4 A .
E 5 GOL 1 434 1 GOL GOL A .
F 5 GOL 1 435 2 GOL GOL A .
G 5 GOL 1 436 3 GOL GOL A .
H 5 GOL 1 437 4 GOL GOL A .
I 6 3D1 1 438 5 3D1 3D1 A .
J 5 GOL 1 439 6 GOL GOL A .
K 5 GOL 1 440 7 GOL GOL A .
L 5 GOL 1 441 8 GOL GOL A .
M 5 GOL 1 442 9 GOL GOL A .
N 7 DTT 1 443 10 DTT DTT A .
O 7 DTT 1 444 11 DTT DTT A .
P 8 EDO 1 445 12 EDO EDO A .
Q 8 EDO 1 446 13 EDO EDO A .
R 8 EDO 1 447 14 EDO EDO A .
S 8 EDO 1 448 15 EDO EDO A .
T 8 EDO 1 449 16 EDO EDO A .
U 9 MG 1 450 1 MG MG A .
V 9 MG 1 451 2 MG MG A .
W 10 CO 1 452 3 CO CO A .
X 11 HOH 1 453 1 HOH HOH A .
X 11 HOH 2 454 3 HOH HOH A .
X 11 HOH 3 455 4 HOH HOH A .
X 11 HOH 4 456 5 HOH HOH A .
X 11 HOH 5 457 6 HOH HOH A .
X 11 HOH 6 458 7 HOH HOH A .
X 11 HOH 7 459 8 HOH HOH A .
X 11 HOH 8 460 9 HOH HOH A .
X 11 HOH 9 461 10 HOH HOH A .
X 11 HOH 10 462 11 HOH HOH A .
X 11 HOH 11 463 12 HOH HOH A .
X 11 HOH 12 464 13 HOH HOH A .
X 11 HOH 13 465 14 HOH HOH A .
X 11 HOH 14 466 15 HOH HOH A .
X 11 HOH 15 467 16 HOH HOH A .
X 11 HOH 16 468 17 HOH HOH A .
X 11 HOH 17 469 18 HOH HOH A .
X 11 HOH 18 470 19 HOH HOH A .
X 11 HOH 19 471 20 HOH HOH A .
X 11 HOH 20 472 21 HOH HOH A .
X 11 HOH 21 473 22 HOH HOH A .
X 11 HOH 22 474 23 HOH HOH A .
X 11 HOH 23 475 24 HOH HOH A .
X 11 HOH 24 476 25 HOH HOH A .
X 11 HOH 25 477 26 HOH HOH A .
X 11 HOH 26 478 27 HOH HOH A .
X 11 HOH 27 479 28 HOH HOH A .
X 11 HOH 28 480 29 HOH HOH A .
X 11 HOH 29 481 30 HOH HOH A .
X 11 HOH 30 482 31 HOH HOH A .
X 11 HOH 31 483 32 HOH HOH A .
X 11 HOH 32 484 33 HOH HOH A .
X 11 HOH 33 485 34 HOH HOH A .
X 11 HOH 34 486 35 HOH HOH A .
X 11 HOH 35 487 36 HOH HOH A .
X 11 HOH 36 488 37 HOH HOH A .
X 11 HOH 37 489 38 HOH HOH A .
X 11 HOH 38 490 39 HOH HOH A .
X 11 HOH 39 491 40 HOH HOH A .
X 11 HOH 40 492 42 HOH HOH A .
X 11 HOH 41 493 43 HOH HOH A .
X 11 HOH 42 494 44 HOH HOH A .
X 11 HOH 43 495 45 HOH HOH A .
X 11 HOH 44 496 46 HOH HOH A .
X 11 HOH 45 497 47 HOH HOH A .
X 11 HOH 46 498 48 HOH HOH A .
X 11 HOH 47 499 49 HOH HOH A .
X 11 HOH 48 500 51 HOH HOH A .
X 11 HOH 49 501 52 HOH HOH A .
X 11 HOH 50 502 54 HOH HOH A .
X 11 HOH 51 503 55 HOH HOH A .
X 11 HOH 52 504 56 HOH HOH A .
X 11 HOH 53 505 57 HOH HOH A .
X 11 HOH 54 506 58 HOH HOH A .
X 11 HOH 55 507 59 HOH HOH A .
X 11 HOH 56 508 60 HOH HOH A .
X 11 HOH 57 509 61 HOH HOH A .
X 11 HOH 58 510 62 HOH HOH A .
X 11 HOH 59 511 63 HOH HOH A .
X 11 HOH 60 512 64 HOH HOH A .
X 11 HOH 61 513 65 HOH HOH A .
X 11 HOH 62 514 66 HOH HOH A .
X 11 HOH 63 515 67 HOH HOH A .
X 11 HOH 64 516 68 HOH HOH A .
X 11 HOH 65 517 69 HOH HOH A .
X 11 HOH 66 518 70 HOH HOH A .
X 11 HOH 67 519 71 HOH HOH A .
X 11 HOH 68 520 75 HOH HOH A .
X 11 HOH 69 521 76 HOH HOH A .
X 11 HOH 70 522 77 HOH HOH A .
X 11 HOH 71 523 78 HOH HOH A .
X 11 HOH 72 524 79 HOH HOH A .
X 11 HOH 73 525 80 HOH HOH A .
X 11 HOH 74 526 82 HOH HOH A .
X 11 HOH 75 527 83 HOH HOH A .
X 11 HOH 76 528 84 HOH HOH A .
X 11 HOH 77 529 85 HOH HOH A .
X 11 HOH 78 530 87 HOH HOH A .
X 11 HOH 79 531 88 HOH HOH A .
X 11 HOH 80 532 89 HOH HOH A .
X 11 HOH 81 533 90 HOH HOH A .
X 11 HOH 82 534 91 HOH HOH A .
X 11 HOH 83 535 92 HOH HOH A .
X 11 HOH 84 536 93 HOH HOH A .
X 11 HOH 85 537 94 HOH HOH A .
X 11 HOH 86 538 95 HOH HOH A .
X 11 HOH 87 539 96 HOH HOH A .
X 11 HOH 88 540 99 HOH HOH A .
X 11 HOH 89 541 100 HOH HOH A .
X 11 HOH 90 542 101 HOH HOH A .
X 11 HOH 91 543 102 HOH HOH A .
X 11 HOH 92 544 103 HOH HOH A .
X 11 HOH 93 545 104 HOH HOH A .
X 11 HOH 94 546 106 HOH HOH A .
X 11 HOH 95 547 108 HOH HOH A .
X 11 HOH 96 548 109 HOH HOH A .
X 11 HOH 97 549 110 HOH HOH A .
X 11 HOH 98 550 111 HOH HOH A .
X 11 HOH 99 551 112 HOH HOH A .
X 11 HOH 100 552 113 HOH HOH A .
X 11 HOH 101 553 114 HOH HOH A .
X 11 HOH 102 554 115 HOH HOH A .
X 11 HOH 103 555 116 HOH HOH A .
X 11 HOH 104 556 117 HOH HOH A .
X 11 HOH 105 557 118 HOH HOH A .
X 11 HOH 106 558 120 HOH HOH A .
X 11 HOH 107 559 121 HOH HOH A .
X 11 HOH 108 560 122 HOH HOH A .
X 11 HOH 109 561 123 HOH HOH A .
X 11 HOH 110 562 124 HOH HOH A .
X 11 HOH 111 563 126 HOH HOH A .
X 11 HOH 112 564 127 HOH HOH A .
Y 11 HOH 1 41 41 HOH HOH T .
Y 11 HOH 2 74 74 HOH HOH T .
Y 11 HOH 3 86 86 HOH HOH T .
Y 11 HOH 4 98 98 HOH HOH T .
Y 11 HOH 5 105 105 HOH HOH T .
Y 11 HOH 6 107 107 HOH HOH T .
Y 11 HOH 7 119 119 HOH HOH T .
Z 11 HOH 1 10 2 HOH HOH P .
Z 11 HOH 2 50 50 HOH HOH P .
Z 11 HOH 3 53 53 HOH HOH P .
Z 11 HOH 4 72 72 HOH HOH P .
Z 11 HOH 5 73 73 HOH HOH P .
Z 11 HOH 6 81 81 HOH HOH P .
Z 11 HOH 7 97 97 HOH HOH P .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A VAL 161 ? CG1 ? A VAL 164 CG1
2 1 Y 1 A VAL 161 ? CG2 ? A VAL 164 CG2
3 1 Y 1 A GLN 162 ? CG ? A GLN 165 CG
4 1 Y 1 A GLN 162 ? CD ? A GLN 165 CD
5 1 Y 1 A GLN 162 ? OE1 ? A GLN 165 OE1
6 1 Y 1 A GLN 162 ? NE2 ? A GLN 165 NE2
7 1 Y 1 A LYS 376 ? CG ? A LYS 379 CG
8 1 Y 1 A LYS 376 ? CD ? A LYS 379 CD
9 1 Y 1 A LYS 376 ? CE ? A LYS 379 CE
10 1 Y 1 A LYS 376 ? NZ ? A LYS 379 NZ
11 1 Y 1 T DA 3 ? P ? B DA 3 P
12 1 Y 1 T DA 3 ? OP1 ? B DA 3 OP1
13 1 Y 1 T DA 3 ? OP2 ? B DA 3 OP2
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MAR345dtb 'data collection' . ? 1
CNS refinement . ? 2
HKL-2000 'data reduction' . ? 3
SCALEPACK 'data scaling' . ? 4
CNS phasing . ? 5
#
_cell.entry_id 3SI8
_cell.length_a 61.236
_cell.length_b 80.259
_cell.length_c 139.759
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3SI8
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3SI8
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 3.11
_exptl_crystal.density_percent_sol 60.39
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 295
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pdbx_details
'0.1 M MES, 5 mM MgCl2, 19-21% (w/v) PEG 2K-MME, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 225 mm CCD'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Si 111'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 22-BM'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 22-BM
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.0
#
_reflns.entry_id 3SI8
_reflns.observed_criterion_sigma_I 0.0
_reflns.observed_criterion_sigma_F 0.0
_reflns.d_resolution_low 30
_reflns.d_resolution_high 2.15
_reflns.number_obs 37705
_reflns.number_all 38213
_reflns.percent_possible_obs 98.7
_reflns.pdbx_Rmerge_I_obs 0.086
_reflns.pdbx_Rsym_value 0.086
_reflns.pdbx_netI_over_sigmaI 12.43
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 8.4
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.15
_reflns_shell.d_res_low 2.25
_reflns_shell.percent_possible_all 97.1
_reflns_shell.Rmerge_I_obs 0.593
_reflns_shell.pdbx_Rsym_value 0.593
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy 6.8
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 3SI8
_refine.ls_number_reflns_obs 37705
_refine.ls_number_reflns_all 37705
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF 2022865.43
_refine.pdbx_data_cutoff_low_absF 0.000000
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 26.28
_refine.ls_d_res_high 2.15
_refine.ls_percent_reflns_obs 98.6
_refine.ls_R_factor_obs 0.241
_refine.ls_R_factor_all 0.245
_refine.ls_R_factor_R_work 0.241
_refine.ls_R_factor_R_free 0.258
_refine.ls_R_factor_R_free_error 0.005
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 7.7
_refine.ls_number_reflns_R_free 2896
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] 24.59
_refine.aniso_B[2][2] -4.76
_refine.aniso_B[3][3] -19.82
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'FLAT MODEL'
_refine.solvent_model_param_ksol 0.4
_refine.solvent_model_param_bsol 80.5258
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'BULK SOLVENT MODEL USED'
_refine.pdbx_starting_model 'pdb entry 3MR2'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model RESTRAINED
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 3SI8
_refine_analyze.Luzzati_coordinate_error_obs 0.35
_refine_analyze.Luzzati_sigma_a_obs 0.61
_refine_analyze.Luzzati_d_res_low_obs 5.00
_refine_analyze.Luzzati_coordinate_error_free 0.37
_refine_analyze.Luzzati_sigma_a_free 0.60
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 3309
_refine_hist.pdbx_number_atoms_nucleic_acid 402
_refine_hist.pdbx_number_atoms_ligand 135
_refine_hist.number_atoms_solvent 126
_refine_hist.number_atoms_total 3972
_refine_hist.d_res_high 2.15
_refine_hist.d_res_low 26.28
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
c_bond_d 0.007 ? ? ? ? 'X-RAY DIFFRACTION'
c_bond_d_na ? ? ? ? ? 'X-RAY DIFFRACTION'
c_bond_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION'
c_angle_d ? ? ? ? ? 'X-RAY DIFFRACTION'
c_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION'
c_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION'
c_angle_deg 1.4 ? ? ? ? 'X-RAY DIFFRACTION'
c_angle_deg_na ? ? ? ? ? 'X-RAY DIFFRACTION'
c_angle_deg_prot ? ? ? ? ? 'X-RAY DIFFRACTION'
c_dihedral_angle_d 22.8 ? ? ? ? 'X-RAY DIFFRACTION'
c_dihedral_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION'
c_dihedral_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION'
c_improper_angle_d 2.02 ? ? ? ? 'X-RAY DIFFRACTION'
c_improper_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION'
c_improper_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION'
c_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
c_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
c_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
c_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 2.15
_refine_ls_shell.d_res_low 2.28
_refine_ls_shell.number_reflns_R_work 5550
_refine_ls_shell.R_factor_R_work 0.442
_refine_ls_shell.percent_reflns_obs 96.9
_refine_ls_shell.R_factor_R_free 0.441
_refine_ls_shell.R_factor_R_free_error 0.020
_refine_ls_shell.percent_reflns_R_free 8.3
_refine_ls_shell.number_reflns_R_free 502
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
loop_
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
_pdbx_xplor_file.pdbx_refine_id
1 protein_rep.param protein.top 'X-RAY DIFFRACTION'
2 dna-rna_cb10.param dna-rna_cb10.top 'X-RAY DIFFRACTION'
3 ligands0220d.param ligands0220d.top 'X-RAY DIFFRACTION'
4 ion.param ion.top 'X-RAY DIFFRACTION'
5 water_rep.param water_rep.top 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 3SI8
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 3SI8
_struct.title
;Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2)
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag N
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3SI8
_struct_keywords.pdbx_keywords TRANSFERASE/DNA
_struct_keywords.text
;protein-DNA complex, multiple domains, three are alpha/beta fold and one of the four is helical fold, DNA polymerase, DNA binding, Mg2+ and dNTP binding, affinity tag is added and partially removed at the N-terminal end, nucleus, TRANSFERASE-DNA complex
;
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
F N N 5 ?
G N N 5 ?
H N N 5 ?
I N N 6 ?
J N N 5 ?
K N N 5 ?
L N N 5 ?
M N N 5 ?
N N N 7 ?
O N N 7 ?
P N N 8 ?
Q N N 8 ?
R N N 8 ?
S N N 8 ?
T N N 8 ?
U N N 9 ?
V N N 9 ?
W N N 10 ?
X N N 11 ?
Y N N 11 ?
Z N N 11 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_isoform
1 UNP POLH_HUMAN Q9Y253 1
;MATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQV
RESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEET
VQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSH
GSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIG
CSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAF
TVIKNCNTSGIQTEWSPPLTMLFLCATKFSAS
;
1 ?
2 PDB 3SI8 3SI8 2 TAACTATGACGC ? ?
3 PDB 3SI8 3SI8 3 TGCGTCATA ? ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3SI8 A 4 ? 435 ? Q9Y253 1 ? 432 ? 1 432
2 2 3SI8 T 1 ? 12 ? 3SI8 1 ? 12 ? 1 12
3 3 3SI8 P 1 ? 9 ? 3SI8 1 ? 9 ? 1 9
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 3SI8 GLY A 1 ? UNP Q9Y253 ? ? 'expression tag' -2 1
1 3SI8 PRO A 2 ? UNP Q9Y253 ? ? 'expression tag' -1 2
1 3SI8 HIS A 3 ? UNP Q9Y253 ? ? 'expression tag' 0 3
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 7890 ?
1 MORE -43 ?
1 'SSA (A^2)' 22380 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 CYS A 19 ? ASN A 29 ? CYS A 16 ASN A 26 1 ? 11
HELX_P HELX_P2 2 PRO A 30 ? ARG A 33 ? PRO A 27 ARG A 30 5 ? 4
HELX_P HELX_P3 3 SER A 54 ? ALA A 59 ? SER A 51 ALA A 56 1 ? 6
HELX_P HELX_P4 4 TRP A 67 ? CYS A 75 ? TRP A 64 CYS A 72 1 ? 9
HELX_P HELX_P5 5 LEU A 92 ? ALA A 110 ? LEU A 89 ALA A 107 1 ? 19
HELX_P HELX_P6 6 LEU A 124 ? GLN A 136 ? LEU A 121 GLN A 133 1 ? 13
HELX_P HELX_P7 7 SER A 141 ? LEU A 145 ? SER A 138 LEU A 142 5 ? 5
HELX_P HELX_P8 8 GLN A 165 ? SER A 180 ? GLN A 162 SER A 177 1 ? 16
HELX_P HELX_P9 9 SER A 188 ? GLY A 212 ? SER A 185 GLY A 209 1 ? 25
HELX_P HELX_P10 10 ASN A 222 ? GLY A 231 ? ASN A 219 GLY A 228 1 ? 10
HELX_P HELX_P11 11 SER A 242 ? GLY A 244 ? SER A 239 GLY A 241 5 ? 3
HELX_P HELX_P12 12 SER A 245 ? GLN A 252 ? SER A 242 GLN A 249 1 ? 8
HELX_P HELX_P13 13 PRO A 254 ? ILE A 258 ? PRO A 251 ILE A 255 5 ? 5
HELX_P HELX_P14 14 GLY A 263 ? GLY A 274 ? GLY A 260 GLY A 271 1 ? 12
HELX_P HELX_P15 15 TYR A 277 ? PHE A 284 ? TYR A 274 PHE A 281 5 ? 8
HELX_P HELX_P16 16 THR A 285 ? GLY A 294 ? THR A 282 GLY A 291 1 ? 10
HELX_P HELX_P17 17 GLY A 294 ? CYS A 305 ? GLY A 291 CYS A 302 1 ? 12
HELX_P HELX_P18 18 PRO A 329 ? ALA A 333 ? PRO A 326 ALA A 330 5 ? 5
HELX_P HELX_P19 19 THR A 336 ? ASP A 363 ? THR A 333 ASP A 360 1 ? 28
HELX_P HELX_P20 20 ASP A 394 ? ASN A 410 ? ASP A 391 ASN A 407 1 ? 17
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? B DC 4 "O3'" ? ? ? 1_555 B TTD 5 P ? ? T DC 4 T TTD 5 1_555 ? ? ? ? ? ? ? 1.606 ? ?
covale2 covale both ? B TTD 5 "O3'" ? ? ? 1_555 B DA 6 P ? ? T TTD 5 T DA 6 1_555 ? ? ? ? ? ? ? 1.605 ? ?
metalc1 metalc ? ? A ASP 16 OD1 ? ? ? 1_555 U MG . MG ? ? A ASP 13 A MG 450 1_555 ? ? ? ? ? ? ? 2.059 ? ?
metalc2 metalc ? ? A ASP 16 OD2 ? ? ? 1_555 V MG . MG ? ? A ASP 13 A MG 451 1_555 ? ? ? ? ? ? ? 2.110 ? ?
metalc3 metalc ? ? A MET 17 O ? ? ? 1_555 U MG . MG ? ? A MET 14 A MG 450 1_555 ? ? ? ? ? ? ? 2.233 ? ?
metalc4 metalc ? ? A ASP 118 OD1 ? ? ? 1_555 U MG . MG ? ? A ASP 115 A MG 450 1_555 ? ? ? ? ? ? ? 2.211 ? ?
metalc5 metalc ? ? A ASP 118 OD2 ? ? ? 1_555 V MG . MG ? ? A ASP 115 A MG 451 1_555 ? ? ? ? ? ? ? 2.283 ? ?
metalc6 metalc ? ? A GLU 119 OE2 ? ? ? 1_555 V MG . MG ? ? A GLU 116 A MG 451 1_555 ? ? ? ? ? ? ? 1.947 ? ?
metalc7 metalc ? ? A HIS 396 NE2 ? ? ? 1_555 W CO . CO ? ? A HIS 393 A CO 452 1_555 ? ? ? ? ? ? ? 1.919 ? ?
metalc8 metalc ? ? A HIS 400 NE2 ? ? ? 1_555 W CO . CO ? ? A HIS 397 A CO 452 1_555 ? ? ? ? ? ? ? 1.863 ? ?
metalc9 metalc ? ? D DZ4 . O1G ? ? ? 1_555 U MG . MG ? ? A DZ4 433 A MG 450 1_555 ? ? ? ? ? ? ? 2.271 ? ?
metalc10 metalc ? ? D DZ4 . O1A ? ? ? 1_555 U MG . MG ? ? A DZ4 433 A MG 450 1_555 ? ? ? ? ? ? ? 2.352 ? ?
metalc11 metalc ? ? D DZ4 . O1B ? ? ? 1_555 U MG . MG ? ? A DZ4 433 A MG 450 1_555 ? ? ? ? ? ? ? 2.392 ? ?
metalc12 metalc ? ? D DZ4 . O1A ? ? ? 1_555 V MG . MG ? ? A DZ4 433 A MG 451 1_555 ? ? ? ? ? ? ? 2.432 ? ?
metalc13 metalc ? ? V MG . MG ? ? ? 1_555 X HOH . O ? ? A MG 451 A HOH 495 1_555 ? ? ? ? ? ? ? 2.169 ? ?
metalc14 metalc ? ? V MG . MG ? ? ? 1_555 C DA 9 "O3'" ? ? A MG 451 P DA 9 1_555 ? ? ? ? ? ? ? 2.241 ? ?
hydrog1 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 8 N3 ? ? T DA 6 P DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 8 O4 ? ? T DA 6 P DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 7 N1 ? ? T DT 7 P DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 7 N6 ? ? T DT 7 P DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 6 N3 ? ? T DG 8 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 6 O2 ? ? T DG 8 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 6 N4 ? ? T DG 8 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 5 N3 ? ? T DA 9 P DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 5 O4 ? ? T DA 9 P DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 10 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 10 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 10 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? T DG 11 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? T DG 11 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? T DG 11 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 2 N1 ? ? T DC 12 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 2 O6 ? ? T DC 12 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 2 N2 ? ? T DC 12 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O ? A MET 17 ? A MET 14 ? 1_555 73.3 ?
2 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 91.8 ?
3 O ? A MET 17 ? A MET 14 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 84.2 ?
4 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 91.1 ?
5 O ? A MET 17 ? A MET 14 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 101.7 ?
6 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 174.0 ?
7 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 112.5 ?
8 O ? A MET 17 ? A MET 14 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 169.6 ?
9 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 86.9 ?
10 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 87.1 ?
11 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 164.5 ?
12 O ? A MET 17 ? A MET 14 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 96.5 ?
13 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 98.9 ?
14 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 79.3 ?
15 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 79.5 ?
16 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 87.2 ?
17 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 87.3 ?
18 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 93.8 ?
19 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 95.5 ?
20 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 98.5 ?
21 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 167.5 ?
22 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O ? X HOH . ? A HOH 495 ? 1_555 83.3 ?
23 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O ? X HOH . ? A HOH 495 ? 1_555 170.1 ?
24 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O ? X HOH . ? A HOH 495 ? 1_555 88.6 ?
25 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O ? X HOH . ? A HOH 495 ? 1_555 79.7 ?
26 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 175.8 ?
27 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 95.4 ?
28 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 89.2 ?
29 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 87.4 ?
30 O ? X HOH . ? A HOH 495 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 94.2 ?
31 NE2 ? A HIS 396 ? A HIS 393 ? 1_555 CO ? W CO . ? A CO 452 ? 1_555 NE2 ? A HIS 400 ? A HIS 397 ? 1_555 105.2 ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 LEU 153 A . ? LEU 150 A PRO 154 A ? PRO 151 A 1 -0.01
2 LYS 234 A . ? LYS 231 A PRO 235 A ? PRO 232 A 1 0.48
3 SER 419 A . ? SER 416 A PRO 420 A ? PRO 417 A 1 -0.47
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 6 ?
B ? 3 ?
C ? 2 ?
D ? 4 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? parallel
A 5 6 ? parallel
B 1 2 ? anti-parallel
B 2 3 ? parallel
C 1 2 ? anti-parallel
D 1 2 ? anti-parallel
D 2 3 ? anti-parallel
D 3 4 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 ILE A 112 ? SER A 116 ? ILE A 109 SER A 113
A 2 GLU A 119 ? ASP A 123 ? GLU A 116 ASP A 120
A 3 VAL A 12 ? MET A 17 ? VAL A 9 MET A 14
A 4 CYS A 215 ? SER A 220 ? CYS A 212 SER A 217
A 5 GLN A 238 ? LEU A 240 ? GLN A 235 LEU A 237
A 6 THR A 148 ? ILE A 150 ? THR A 145 ILE A 147
B 1 ILE A 50 ? VAL A 53 ? ILE A 47 VAL A 50
B 2 CYS A 37 ? VAL A 40 ? CYS A 34 VAL A 37
B 3 LEU A 79 ? GLN A 82 ? LEU A 76 GLN A 79
C 1 GLU A 85 ? SER A 86 ? GLU A 82 SER A 83
C 2 LYS A 89 ? ALA A 90 ? LYS A 86 ALA A 87
D 1 ILE A 322 ? ASN A 327 ? ILE A 319 ASN A 324
D 2 LEU A 422 ? SER A 433 ? LEU A 419 SER A 430
D 3 VAL A 365 ? VAL A 375 ? VAL A 362 VAL A 372
D 4 LEU A 384 ? ALA A 389 ? LEU A 381 ALA A 386
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N GLU A 113 ? N GLU A 110 O TYR A 121 ? O TYR A 118
A 2 3 O VAL A 122 ? O VAL A 119 N ALA A 13 ? N ALA A 10
A 3 4 N VAL A 12 ? N VAL A 9 O SER A 220 ? O SER A 217
A 4 5 N ILE A 219 ? N ILE A 216 O THR A 239 ? O THR A 236
A 5 6 O LEU A 240 ? O LEU A 237 N TYR A 149 ? N TYR A 146
B 1 2 O ILE A 51 ? O ILE A 48 N VAL A 39 ? N VAL A 36
B 2 3 N VAL A 40 ? N VAL A 37 O ALA A 81 ? O ALA A 78
C 1 2 N SER A 86 ? N SER A 83 O LYS A 89 ? O LYS A 86
D 1 2 N ILE A 322 ? N ILE A 319 O ALA A 429 ? O ALA A 426
D 2 3 O CYS A 428 ? O CYS A 425 N VAL A 370 ? N VAL A 367
D 3 4 N VAL A 371 ? N VAL A 368 O ARG A 386 ? O ARG A 383
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DZ4 433 ? 18 'BINDING SITE FOR RESIDUE DZ4 A 433'
AC2 Software A GOL 434 ? 4 'BINDING SITE FOR RESIDUE GOL A 434'
AC3 Software A GOL 435 ? 3 'BINDING SITE FOR RESIDUE GOL A 435'
AC4 Software A GOL 436 ? 2 'BINDING SITE FOR RESIDUE GOL A 436'
AC5 Software A GOL 437 ? 8 'BINDING SITE FOR RESIDUE GOL A 437'
AC6 Software A 3D1 438 ? 5 'BINDING SITE FOR RESIDUE 3D1 A 438'
AC7 Software A GOL 439 ? 5 'BINDING SITE FOR RESIDUE GOL A 439'
AC8 Software A GOL 440 ? 3 'BINDING SITE FOR RESIDUE GOL A 440'
AC9 Software A GOL 441 ? 2 'BINDING SITE FOR RESIDUE GOL A 441'
BC1 Software A GOL 442 ? 6 'BINDING SITE FOR RESIDUE GOL A 442'
BC2 Software A DTT 443 ? 5 'BINDING SITE FOR RESIDUE DTT A 443'
BC3 Software A DTT 444 ? 6 'BINDING SITE FOR RESIDUE DTT A 444'
BC4 Software A EDO 445 ? 3 'BINDING SITE FOR RESIDUE EDO A 445'
BC5 Software A EDO 446 ? 5 'BINDING SITE FOR RESIDUE EDO A 446'
BC6 Software A EDO 447 ? 1 'BINDING SITE FOR RESIDUE EDO A 447'
BC7 Software A EDO 448 ? 2 'BINDING SITE FOR RESIDUE EDO A 448'
BC8 Software A EDO 449 ? 3 'BINDING SITE FOR RESIDUE EDO A 449'
BC9 Software A MG 450 ? 5 'BINDING SITE FOR RESIDUE MG A 450'
CC1 Software A MG 451 ? 7 'BINDING SITE FOR RESIDUE MG A 451'
CC2 Software A CO 452 ? 4 'BINDING SITE FOR RESIDUE CO A 452'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 18 ASP A 16 ? ASP A 13 . ? 1_555 ?
2 AC1 18 MET A 17 ? MET A 14 . ? 1_555 ?
3 AC1 18 ASP A 18 ? ASP A 15 . ? 1_555 ?
4 AC1 18 CYS A 19 ? CYS A 16 . ? 1_555 ?
5 AC1 18 PHE A 20 ? PHE A 17 . ? 1_555 ?
6 AC1 18 PHE A 21 ? PHE A 18 . ? 1_555 ?
7 AC1 18 ALA A 52 ? ALA A 49 . ? 1_555 ?
8 AC1 18 TYR A 55 ? TYR A 52 . ? 1_555 ?
9 AC1 18 ARG A 58 ? ARG A 55 . ? 1_555 ?
10 AC1 18 ARG A 64 ? ARG A 61 . ? 1_555 ?
11 AC1 18 ASP A 118 ? ASP A 115 . ? 1_555 ?
12 AC1 18 LYS A 234 ? LYS A 231 . ? 1_555 ?
13 AC1 18 MG U . ? MG A 450 . ? 1_555 ?
14 AC1 18 MG V . ? MG A 451 . ? 1_555 ?
15 AC1 18 HOH X . ? HOH A 475 . ? 1_555 ?
16 AC1 18 HOH X . ? HOH A 495 . ? 1_555 ?
17 AC1 18 DA C 9 ? DA P 9 . ? 1_555 ?
18 AC1 18 TTD B 5 ? TTD T 5 . ? 1_555 ?
19 AC2 4 HIS A 243 ? HIS A 240 . ? 1_555 ?
20 AC2 4 GLY A 244 ? GLY A 241 . ? 1_555 ?
21 AC2 4 PRO A 247 ? PRO A 244 . ? 1_555 ?
22 AC2 4 EDO T . ? EDO A 449 . ? 1_555 ?
23 AC3 3 THR A 285 ? THR A 282 . ? 1_555 ?
24 AC3 3 SER A 287 ? SER A 284 . ? 1_555 ?
25 AC3 3 HOH X . ? HOH A 460 . ? 1_555 ?
26 AC4 2 THR A 356 ? THR A 353 . ? 1_555 ?
27 AC4 2 ASN A 360 ? ASN A 357 . ? 1_555 ?
28 AC5 8 LEU A 14 ? LEU A 11 . ? 1_555 ?
29 AC5 8 GLU A 119 ? GLU A 116 . ? 1_555 ?
30 AC5 8 LYS A 227 ? LYS A 224 . ? 1_555 ?
31 AC5 8 CYS A 230 ? CYS A 227 . ? 1_555 ?
32 AC5 8 GLY A 231 ? GLY A 228 . ? 1_555 ?
33 AC5 8 LYS A 234 ? LYS A 231 . ? 1_555 ?
34 AC5 8 HOH X . ? HOH A 495 . ? 1_555 ?
35 AC5 8 DA C 9 ? DA P 9 . ? 1_555 ?
36 AC6 5 SER A 260 ? SER A 257 . ? 1_555 ?
37 AC6 5 LEU A 265 ? LEU A 262 . ? 1_555 ?
38 AC6 5 LYS A 296 ? LYS A 293 . ? 1_555 ?
39 AC6 5 ASN A 297 ? ASN A 294 . ? 1_555 ?
40 AC6 5 TRP A 300 ? TRP A 297 . ? 1_555 ?
41 AC7 5 ASP A 184 ? ASP A 181 . ? 4_445 ?
42 AC7 5 ASN A 185 ? ASN A 182 . ? 4_445 ?
43 AC7 5 LEU A 186 ? LEU A 183 . ? 4_445 ?
44 AC7 5 GLN A 283 ? GLN A 280 . ? 1_555 ?
45 AC7 5 GLN A 288 ? GLN A 285 . ? 1_555 ?
46 AC8 3 VAL A 375 ? VAL A 372 . ? 1_555 ?
47 AC8 3 ASP A 378 ? ASP A 375 . ? 1_555 ?
48 AC8 3 ARG A 380 ? ARG A 377 . ? 1_555 ?
49 AC9 2 ASP A 143 ? ASP A 140 . ? 1_555 ?
50 AC9 2 LYS A 171 ? LYS A 168 . ? 1_555 ?
51 BC1 6 SER A 268 ? SER A 265 . ? 1_555 ?
52 BC1 6 HIS A 292 ? HIS A 289 . ? 1_555 ?
53 BC1 6 PHE A 293 ? PHE A 290 . ? 1_555 ?
54 BC1 6 GLN A 346 ? GLN A 343 . ? 3_544 ?
55 BC1 6 GLN A 349 ? GLN A 346 . ? 3_544 ?
56 BC1 6 EDO R . ? EDO A 447 . ? 1_555 ?
57 BC2 5 GLN A 290 ? GLN A 287 . ? 1_555 ?
58 BC2 5 GLY A 294 ? GLY A 291 . ? 1_555 ?
59 BC2 5 GLU A 295 ? GLU A 292 . ? 1_555 ?
60 BC2 5 GLU A 338 ? GLU A 335 . ? 3_544 ?
61 BC2 5 TRP A 342 ? TRP A 339 . ? 3_544 ?
62 BC3 6 GLU A 151 ? GLU A 148 . ? 1_555 ?
63 BC3 6 GLY A 152 ? GLY A 149 . ? 1_555 ?
64 BC3 6 TRP A 177 ? TRP A 174 . ? 1_555 ?
65 BC3 6 SER A 242 ? SER A 239 . ? 1_555 ?
66 BC3 6 SER A 245 ? SER A 242 . ? 1_555 ?
67 BC3 6 EDO P . ? EDO A 445 . ? 1_555 ?
68 BC4 3 GLN A 155 ? GLN A 152 . ? 1_555 ?
69 BC4 3 SER A 180 ? SER A 177 . ? 1_555 ?
70 BC4 3 DTT O . ? DTT A 444 . ? 1_555 ?
71 BC5 5 LYS A 227 ? LYS A 224 . ? 1_555 ?
72 BC5 5 ARG A 256 ? ARG A 253 . ? 1_555 ?
73 BC5 5 ARG A 259 ? ARG A 256 . ? 1_555 ?
74 BC5 5 DT C 8 ? DT P 8 . ? 1_555 ?
75 BC5 5 DA C 9 ? DA P 9 . ? 1_555 ?
76 BC6 1 GOL M . ? GOL A 442 . ? 1_555 ?
77 BC7 2 ARG A 256 ? ARG A 253 . ? 1_555 ?
78 BC7 2 GLY A 263 ? GLY A 260 . ? 1_555 ?
79 BC8 3 HIS A 243 ? HIS A 240 . ? 1_555 ?
80 BC8 3 ARG A 306 ? ARG A 303 . ? 1_555 ?
81 BC8 3 GOL E . ? GOL A 434 . ? 1_555 ?
82 BC9 5 ASP A 16 ? ASP A 13 . ? 1_555 ?
83 BC9 5 MET A 17 ? MET A 14 . ? 1_555 ?
84 BC9 5 ASP A 118 ? ASP A 115 . ? 1_555 ?
85 BC9 5 DZ4 D . ? DZ4 A 433 . ? 1_555 ?
86 BC9 5 MG V . ? MG A 451 . ? 1_555 ?
87 CC1 7 ASP A 16 ? ASP A 13 . ? 1_555 ?
88 CC1 7 ASP A 118 ? ASP A 115 . ? 1_555 ?
89 CC1 7 GLU A 119 ? GLU A 116 . ? 1_555 ?
90 CC1 7 DZ4 D . ? DZ4 A 433 . ? 1_555 ?
91 CC1 7 MG U . ? MG A 450 . ? 1_555 ?
92 CC1 7 HOH X . ? HOH A 495 . ? 1_555 ?
93 CC1 7 DA C 9 ? DA P 9 . ? 1_555 ?
94 CC2 4 ASP A 184 ? ASP A 181 . ? 2_554 ?
95 CC2 4 HIS A 292 ? HIS A 289 . ? 3_554 ?
96 CC2 4 HIS A 396 ? HIS A 393 . ? 1_555 ?
97 CC2 4 HIS A 400 ? HIS A 397 . ? 1_555 ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 CYS A 16 ? ? 25.59 61.76
2 1 LEU A 75 ? ? -38.55 123.96
3 1 SER A 217 ? ? -158.37 -156.94
4 1 ARG A 253 ? ? -68.85 0.32
5 1 SER A 257 ? ? 80.98 -2.50
6 1 GLN A 314 ? ? -137.23 -32.75
7 1 GLN A 412 ? ? 84.58 -6.17
8 1 THR A 413 ? ? -140.30 -20.68
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id B
_pdbx_struct_mod_residue.label_comp_id TTD
_pdbx_struct_mod_residue.label_seq_id 5
_pdbx_struct_mod_residue.auth_asym_id T
_pdbx_struct_mod_residue.auth_comp_id TTD
_pdbx_struct_mod_residue.auth_seq_id 5
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DT
_pdbx_struct_mod_residue.details 'CIS-SYN CYCLOBUTANE THYMINE DIMER'
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A GLY -2 ? A GLY 1
2 1 Y 1 A PRO 154 ? A PRO 157
3 1 Y 1 A THR 155 ? A THR 158
4 1 Y 1 A THR 156 ? A THR 159
5 1 Y 1 A ALA 157 ? A ALA 160
6 1 Y 1 A GLU 158 ? A GLU 161
7 1 Y 1 A GLU 159 ? A GLU 162
8 1 Y 1 A THR 160 ? A THR 163
9 1 Y 1 A THR 408 ? A THR 411
10 1 Y 1 A SER 409 ? A SER 412
11 1 Y 1 A GLY 410 ? A GLY 413
12 1 Y 1 A ALA 431 ? A ALA 434
13 1 Y 1 A SER 432 ? A SER 435
14 1 Y 1 T DT 1 ? B DT 1
15 1 Y 1 T DA 2 ? B DA 2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
3D1 "O5'" O N N 1
3D1 "C5'" C N N 2
3D1 "C4'" C N R 3
3D1 "O4'" O N N 4
3D1 "C1'" C N R 5
3D1 N9 N Y N 6
3D1 C4 C Y N 7
3D1 N3 N Y N 8
3D1 C2 C Y N 9
3D1 N1 N Y N 10
3D1 C6 C Y N 11
3D1 N6 N N N 12
3D1 C5 C Y N 13
3D1 N7 N Y N 14
3D1 C8 C Y N 15
3D1 "C2'" C N N 16
3D1 "C3'" C N S 17
3D1 "O3'" O N N 18
3D1 "H5'" H N N 19
3D1 "H5'1" H N N 20
3D1 "H5'2" H N N 21
3D1 "H4'" H N N 22
3D1 "H1'" H N N 23
3D1 H2 H N N 24
3D1 HN61 H N N 25
3D1 HN62 H N N 26
3D1 H8 H N N 27
3D1 "H2'1" H N N 28
3D1 "H2'2" H N N 29
3D1 "H3'" H N N 30
3D1 H1 H N N 31
ALA N N N N 32
ALA CA C N S 33
ALA C C N N 34
ALA O O N N 35
ALA CB C N N 36
ALA OXT O N N 37
ALA H H N N 38
ALA H2 H N N 39
ALA HA H N N 40
ALA HB1 H N N 41
ALA HB2 H N N 42
ALA HB3 H N N 43
ALA HXT H N N 44
ARG N N N N 45
ARG CA C N S 46
ARG C C N N 47
ARG O O N N 48
ARG CB C N N 49
ARG CG C N N 50
ARG CD C N N 51
ARG NE N N N 52
ARG CZ C N N 53
ARG NH1 N N N 54
ARG NH2 N N N 55
ARG OXT O N N 56
ARG H H N N 57
ARG H2 H N N 58
ARG HA H N N 59
ARG HB2 H N N 60
ARG HB3 H N N 61
ARG HG2 H N N 62
ARG HG3 H N N 63
ARG HD2 H N N 64
ARG HD3 H N N 65
ARG HE H N N 66
ARG HH11 H N N 67
ARG HH12 H N N 68
ARG HH21 H N N 69
ARG HH22 H N N 70
ARG HXT H N N 71
ASN N N N N 72
ASN CA C N S 73
ASN C C N N 74
ASN O O N N 75
ASN CB C N N 76
ASN CG C N N 77
ASN OD1 O N N 78
ASN ND2 N N N 79
ASN OXT O N N 80
ASN H H N N 81
ASN H2 H N N 82
ASN HA H N N 83
ASN HB2 H N N 84
ASN HB3 H N N 85
ASN HD21 H N N 86
ASN HD22 H N N 87
ASN HXT H N N 88
ASP N N N N 89
ASP CA C N S 90
ASP C C N N 91
ASP O O N N 92
ASP CB C N N 93
ASP CG C N N 94
ASP OD1 O N N 95
ASP OD2 O N N 96
ASP OXT O N N 97
ASP H H N N 98
ASP H2 H N N 99
ASP HA H N N 100
ASP HB2 H N N 101
ASP HB3 H N N 102
ASP HD2 H N N 103
ASP HXT H N N 104
CO CO CO N N 105
CYS N N N N 106
CYS CA C N R 107
CYS C C N N 108
CYS O O N N 109
CYS CB C N N 110
CYS SG S N N 111
CYS OXT O N N 112
CYS H H N N 113
CYS H2 H N N 114
CYS HA H N N 115
CYS HB2 H N N 116
CYS HB3 H N N 117
CYS HG H N N 118
CYS HXT H N N 119
DA OP3 O N N 120
DA P P N N 121
DA OP1 O N N 122
DA OP2 O N N 123
DA "O5'" O N N 124
DA "C5'" C N N 125
DA "C4'" C N R 126
DA "O4'" O N N 127
DA "C3'" C N S 128
DA "O3'" O N N 129
DA "C2'" C N N 130
DA "C1'" C N R 131
DA N9 N Y N 132
DA C8 C Y N 133
DA N7 N Y N 134
DA C5 C Y N 135
DA C6 C Y N 136
DA N6 N N N 137
DA N1 N Y N 138
DA C2 C Y N 139
DA N3 N Y N 140
DA C4 C Y N 141
DA HOP3 H N N 142
DA HOP2 H N N 143
DA "H5'" H N N 144
DA "H5''" H N N 145
DA "H4'" H N N 146
DA "H3'" H N N 147
DA "HO3'" H N N 148
DA "H2'" H N N 149
DA "H2''" H N N 150
DA "H1'" H N N 151
DA H8 H N N 152
DA H61 H N N 153
DA H62 H N N 154
DA H2 H N N 155
DC OP3 O N N 156
DC P P N N 157
DC OP1 O N N 158
DC OP2 O N N 159
DC "O5'" O N N 160
DC "C5'" C N N 161
DC "C4'" C N R 162
DC "O4'" O N N 163
DC "C3'" C N S 164
DC "O3'" O N N 165
DC "C2'" C N N 166
DC "C1'" C N R 167
DC N1 N N N 168
DC C2 C N N 169
DC O2 O N N 170
DC N3 N N N 171
DC C4 C N N 172
DC N4 N N N 173
DC C5 C N N 174
DC C6 C N N 175
DC HOP3 H N N 176
DC HOP2 H N N 177
DC "H5'" H N N 178
DC "H5''" H N N 179
DC "H4'" H N N 180
DC "H3'" H N N 181
DC "HO3'" H N N 182
DC "H2'" H N N 183
DC "H2''" H N N 184
DC "H1'" H N N 185
DC H41 H N N 186
DC H42 H N N 187
DC H5 H N N 188
DC H6 H N N 189
DG OP3 O N N 190
DG P P N N 191
DG OP1 O N N 192
DG OP2 O N N 193
DG "O5'" O N N 194
DG "C5'" C N N 195
DG "C4'" C N R 196
DG "O4'" O N N 197
DG "C3'" C N S 198
DG "O3'" O N N 199
DG "C2'" C N N 200
DG "C1'" C N R 201
DG N9 N Y N 202
DG C8 C Y N 203
DG N7 N Y N 204
DG C5 C Y N 205
DG C6 C N N 206
DG O6 O N N 207
DG N1 N N N 208
DG C2 C N N 209
DG N2 N N N 210
DG N3 N N N 211
DG C4 C Y N 212
DG HOP3 H N N 213
DG HOP2 H N N 214
DG "H5'" H N N 215
DG "H5''" H N N 216
DG "H4'" H N N 217
DG "H3'" H N N 218
DG "HO3'" H N N 219
DG "H2'" H N N 220
DG "H2''" H N N 221
DG "H1'" H N N 222
DG H8 H N N 223
DG H1 H N N 224
DG H21 H N N 225
DG H22 H N N 226
DT OP3 O N N 227
DT P P N N 228
DT OP1 O N N 229
DT OP2 O N N 230
DT "O5'" O N N 231
DT "C5'" C N N 232
DT "C4'" C N R 233
DT "O4'" O N N 234
DT "C3'" C N S 235
DT "O3'" O N N 236
DT "C2'" C N N 237
DT "C1'" C N R 238
DT N1 N N N 239
DT C2 C N N 240
DT O2 O N N 241
DT N3 N N N 242
DT C4 C N N 243
DT O4 O N N 244
DT C5 C N N 245
DT C7 C N N 246
DT C6 C N N 247
DT HOP3 H N N 248
DT HOP2 H N N 249
DT "H5'" H N N 250
DT "H5''" H N N 251
DT "H4'" H N N 252
DT "H3'" H N N 253
DT "HO3'" H N N 254
DT "H2'" H N N 255
DT "H2''" H N N 256
DT "H1'" H N N 257
DT H3 H N N 258
DT H71 H N N 259
DT H72 H N N 260
DT H73 H N N 261
DT H6 H N N 262
DTT S1 S N N 263
DTT C1 C N N 264
DTT C2 C N R 265
DTT O2 O N N 266
DTT C3 C N R 267
DTT O3 O N N 268
DTT C4 C N N 269
DTT S4 S N N 270
DTT HS1 H N N 271
DTT H11 H N N 272
DTT H12 H N N 273
DTT H2 H N N 274
DTT HO2 H N N 275
DTT H3 H N N 276
DTT HO3 H N N 277
DTT H41 H N N 278
DTT H42 H N N 279
DTT HS2 H N N 280
DZ4 N1 N Y N 281
DZ4 C2 C Y N 282
DZ4 N3 N Y N 283
DZ4 C4 C Y N 284
DZ4 C5 C Y N 285
DZ4 C6 C Y N 286
DZ4 N6 N N N 287
DZ4 N7 N Y N 288
DZ4 C8 C Y N 289
DZ4 N9 N Y N 290
DZ4 PA P N N 291
DZ4 PB P N N 292
DZ4 PG P N N 293
DZ4 "C1'" C N R 294
DZ4 O1A O N N 295
DZ4 O1B O N N 296
DZ4 O1G O N N 297
DZ4 "C2'" C N N 298
DZ4 O2A O N N 299
DZ4 O2B O N N 300
DZ4 O2G O N N 301
DZ4 "C3'" C N S 302
DZ4 "O3'" O N N 303
DZ4 N3A N N N 304
DZ4 O3B O N N 305
DZ4 O3G O N N 306
DZ4 "C4'" C N R 307
DZ4 "O4'" O N N 308
DZ4 "C5'" C N N 309
DZ4 "O5'" O N N 310
DZ4 H2 H N N 311
DZ4 HN6 H N N 312
DZ4 HN6A H N N 313
DZ4 H8 H N N 314
DZ4 "H1'" H N N 315
DZ4 "H2'" H N N 316
DZ4 "H2'A" H N N 317
DZ4 HO2A H N N 318
DZ4 HO2B H N N 319
DZ4 HO2G H N N 320
DZ4 "H3'" H N N 321
DZ4 "HO3'" H N N 322
DZ4 HN3A H N N 323
DZ4 HO3G H N N 324
DZ4 "H4'" H N N 325
DZ4 "H5'" H N N 326
DZ4 "H5'A" H N N 327
EDO C1 C N N 328
EDO O1 O N N 329
EDO C2 C N N 330
EDO O2 O N N 331
EDO H11 H N N 332
EDO H12 H N N 333
EDO HO1 H N N 334
EDO H21 H N N 335
EDO H22 H N N 336
EDO HO2 H N N 337
GLN N N N N 338
GLN CA C N S 339
GLN C C N N 340
GLN O O N N 341
GLN CB C N N 342
GLN CG C N N 343
GLN CD C N N 344
GLN OE1 O N N 345
GLN NE2 N N N 346
GLN OXT O N N 347
GLN H H N N 348
GLN H2 H N N 349
GLN HA H N N 350
GLN HB2 H N N 351
GLN HB3 H N N 352
GLN HG2 H N N 353
GLN HG3 H N N 354
GLN HE21 H N N 355
GLN HE22 H N N 356
GLN HXT H N N 357
GLU N N N N 358
GLU CA C N S 359
GLU C C N N 360
GLU O O N N 361
GLU CB C N N 362
GLU CG C N N 363
GLU CD C N N 364
GLU OE1 O N N 365
GLU OE2 O N N 366
GLU OXT O N N 367
GLU H H N N 368
GLU H2 H N N 369
GLU HA H N N 370
GLU HB2 H N N 371
GLU HB3 H N N 372
GLU HG2 H N N 373
GLU HG3 H N N 374
GLU HE2 H N N 375
GLU HXT H N N 376
GLY N N N N 377
GLY CA C N N 378
GLY C C N N 379
GLY O O N N 380
GLY OXT O N N 381
GLY H H N N 382
GLY H2 H N N 383
GLY HA2 H N N 384
GLY HA3 H N N 385
GLY HXT H N N 386
GOL C1 C N N 387
GOL O1 O N N 388
GOL C2 C N N 389
GOL O2 O N N 390
GOL C3 C N N 391
GOL O3 O N N 392
GOL H11 H N N 393
GOL H12 H N N 394
GOL HO1 H N N 395
GOL H2 H N N 396
GOL HO2 H N N 397
GOL H31 H N N 398
GOL H32 H N N 399
GOL HO3 H N N 400
HIS N N N N 401
HIS CA C N S 402
HIS C C N N 403
HIS O O N N 404
HIS CB C N N 405
HIS CG C Y N 406
HIS ND1 N Y N 407
HIS CD2 C Y N 408
HIS CE1 C Y N 409
HIS NE2 N Y N 410
HIS OXT O N N 411
HIS H H N N 412
HIS H2 H N N 413
HIS HA H N N 414
HIS HB2 H N N 415
HIS HB3 H N N 416
HIS HD1 H N N 417
HIS HD2 H N N 418
HIS HE1 H N N 419
HIS HE2 H N N 420
HIS HXT H N N 421
HOH O O N N 422
HOH H1 H N N 423
HOH H2 H N N 424
ILE N N N N 425
ILE CA C N S 426
ILE C C N N 427
ILE O O N N 428
ILE CB C N S 429
ILE CG1 C N N 430
ILE CG2 C N N 431
ILE CD1 C N N 432
ILE OXT O N N 433
ILE H H N N 434
ILE H2 H N N 435
ILE HA H N N 436
ILE HB H N N 437
ILE HG12 H N N 438
ILE HG13 H N N 439
ILE HG21 H N N 440
ILE HG22 H N N 441
ILE HG23 H N N 442
ILE HD11 H N N 443
ILE HD12 H N N 444
ILE HD13 H N N 445
ILE HXT H N N 446
LEU N N N N 447
LEU CA C N S 448
LEU C C N N 449
LEU O O N N 450
LEU CB C N N 451
LEU CG C N N 452
LEU CD1 C N N 453
LEU CD2 C N N 454
LEU OXT O N N 455
LEU H H N N 456
LEU H2 H N N 457
LEU HA H N N 458
LEU HB2 H N N 459
LEU HB3 H N N 460
LEU HG H N N 461
LEU HD11 H N N 462
LEU HD12 H N N 463
LEU HD13 H N N 464
LEU HD21 H N N 465
LEU HD22 H N N 466
LEU HD23 H N N 467
LEU HXT H N N 468
LYS N N N N 469
LYS CA C N S 470
LYS C C N N 471
LYS O O N N 472
LYS CB C N N 473
LYS CG C N N 474
LYS CD C N N 475
LYS CE C N N 476
LYS NZ N N N 477
LYS OXT O N N 478
LYS H H N N 479
LYS H2 H N N 480
LYS HA H N N 481
LYS HB2 H N N 482
LYS HB3 H N N 483
LYS HG2 H N N 484
LYS HG3 H N N 485
LYS HD2 H N N 486
LYS HD3 H N N 487
LYS HE2 H N N 488
LYS HE3 H N N 489
LYS HZ1 H N N 490
LYS HZ2 H N N 491
LYS HZ3 H N N 492
LYS HXT H N N 493
MET N N N N 494
MET CA C N S 495
MET C C N N 496
MET O O N N 497
MET CB C N N 498
MET CG C N N 499
MET SD S N N 500
MET CE C N N 501
MET OXT O N N 502
MET H H N N 503
MET H2 H N N 504
MET HA H N N 505
MET HB2 H N N 506
MET HB3 H N N 507
MET HG2 H N N 508
MET HG3 H N N 509
MET HE1 H N N 510
MET HE2 H N N 511
MET HE3 H N N 512
MET HXT H N N 513
MG MG MG N N 514
PHE N N N N 515
PHE CA C N S 516
PHE C C N N 517
PHE O O N N 518
PHE CB C N N 519
PHE CG C Y N 520
PHE CD1 C Y N 521
PHE CD2 C Y N 522
PHE CE1 C Y N 523
PHE CE2 C Y N 524
PHE CZ C Y N 525
PHE OXT O N N 526
PHE H H N N 527
PHE H2 H N N 528
PHE HA H N N 529
PHE HB2 H N N 530
PHE HB3 H N N 531
PHE HD1 H N N 532
PHE HD2 H N N 533
PHE HE1 H N N 534
PHE HE2 H N N 535
PHE HZ H N N 536
PHE HXT H N N 537
PRO N N N N 538
PRO CA C N S 539
PRO C C N N 540
PRO O O N N 541
PRO CB C N N 542
PRO CG C N N 543
PRO CD C N N 544
PRO OXT O N N 545
PRO H H N N 546
PRO HA H N N 547
PRO HB2 H N N 548
PRO HB3 H N N 549
PRO HG2 H N N 550
PRO HG3 H N N 551
PRO HD2 H N N 552
PRO HD3 H N N 553
PRO HXT H N N 554
SER N N N N 555
SER CA C N S 556
SER C C N N 557
SER O O N N 558
SER CB C N N 559
SER OG O N N 560
SER OXT O N N 561
SER H H N N 562
SER H2 H N N 563
SER HA H N N 564
SER HB2 H N N 565
SER HB3 H N N 566
SER HG H N N 567
SER HXT H N N 568
THR N N N N 569
THR CA C N S 570
THR C C N N 571
THR O O N N 572
THR CB C N R 573
THR OG1 O N N 574
THR CG2 C N N 575
THR OXT O N N 576
THR H H N N 577
THR H2 H N N 578
THR HA H N N 579
THR HB H N N 580
THR HG1 H N N 581
THR HG21 H N N 582
THR HG22 H N N 583
THR HG23 H N N 584
THR HXT H N N 585
TRP N N N N 586
TRP CA C N S 587
TRP C C N N 588
TRP O O N N 589
TRP CB C N N 590
TRP CG C Y N 591
TRP CD1 C Y N 592
TRP CD2 C Y N 593
TRP NE1 N Y N 594
TRP CE2 C Y N 595
TRP CE3 C Y N 596
TRP CZ2 C Y N 597
TRP CZ3 C Y N 598
TRP CH2 C Y N 599
TRP OXT O N N 600
TRP H H N N 601
TRP H2 H N N 602
TRP HA H N N 603
TRP HB2 H N N 604
TRP HB3 H N N 605
TRP HD1 H N N 606
TRP HE1 H N N 607
TRP HE3 H N N 608
TRP HZ2 H N N 609
TRP HZ3 H N N 610
TRP HH2 H N N 611
TRP HXT H N N 612
TTD P P N N 613
TTD OP1 O N N 614
TTD OP2 O N N 615
TTD OP3 O N N 616
TTD "O5'" O N N 617
TTD "C5'" C N N 618
TTD C4R C N R 619
TTD "O4'" O N N 620
TTD C3R C N S 621
TTD O3R O N N 622
TTD "C2'" C N N 623
TTD "C1'" C N R 624
TTD N1 N N N 625
TTD C2 C N N 626
TTD O2 O N N 627
TTD N3 N N N 628
TTD C4 C N N 629
TTD O4 O N N 630
TTD C5 C N R 631
TTD C5A C N N 632
TTD C6 C N R 633
TTD PB P N S 634
TTD O5P O N N 635
TTD O4P O N N 636
TTD O5R O N N 637
TTD C5R C N N 638
TTD O4R O N N 639
TTD C2R C N N 640
TTD C1R C N R 641
TTD N1T N N N 642
TTD C2T C N N 643
TTD O2T O N N 644
TTD N3T N N N 645
TTD C4T C N N 646
TTD O4T O N N 647
TTD C5T C N S 648
TTD C5M C N N 649
TTD C6T C N S 650
TTD "C4'" C N R 651
TTD "C3'" C N S 652
TTD "O3'" O N N 653
TTD HOP2 H N N 654
TTD HOP3 H N N 655
TTD "H5'" H N N 656
TTD "H5''" H N N 657
TTD H4R H N N 658
TTD H3R H N N 659
TTD "H2'" H N N 660
TTD "H2''" H N N 661
TTD "H1'" H N N 662
TTD HN3 H N N 663
TTD H5A1 H N N 664
TTD H5A2 H N N 665
TTD H5A3 H N N 666
TTD H6 H N N 667
TTD H4P H N N 668
TTD H5R1 H N N 669
TTD H5R2 H N N 670
TTD H2R1 H N N 671
TTD H2R2 H N N 672
TTD H1R H N N 673
TTD HT H N N 674
TTD H71 H N N 675
TTD H72 H N N 676
TTD H73 H N N 677
TTD H6T H N N 678
TTD "H4'" H N N 679
TTD H1 H N N 680
TTD "HO3'" H N N 681
TYR N N N N 682
TYR CA C N S 683
TYR C C N N 684
TYR O O N N 685
TYR CB C N N 686
TYR CG C Y N 687
TYR CD1 C Y N 688
TYR CD2 C Y N 689
TYR CE1 C Y N 690
TYR CE2 C Y N 691
TYR CZ C Y N 692
TYR OH O N N 693
TYR OXT O N N 694
TYR H H N N 695
TYR H2 H N N 696
TYR HA H N N 697
TYR HB2 H N N 698
TYR HB3 H N N 699
TYR HD1 H N N 700
TYR HD2 H N N 701
TYR HE1 H N N 702
TYR HE2 H N N 703
TYR HH H N N 704
TYR HXT H N N 705
VAL N N N N 706
VAL CA C N S 707
VAL C C N N 708
VAL O O N N 709
VAL CB C N N 710
VAL CG1 C N N 711
VAL CG2 C N N 712
VAL OXT O N N 713
VAL H H N N 714
VAL H2 H N N 715
VAL HA H N N 716
VAL HB H N N 717
VAL HG11 H N N 718
VAL HG12 H N N 719
VAL HG13 H N N 720
VAL HG21 H N N 721
VAL HG22 H N N 722
VAL HG23 H N N 723
VAL HXT H N N 724
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3D1 "O5'" "C5'" sing N N 1
3D1 "O5'" "H5'" sing N N 2
3D1 "C5'" "C4'" sing N N 3
3D1 "C5'" "H5'1" sing N N 4
3D1 "C5'" "H5'2" sing N N 5
3D1 "C4'" "O4'" sing N N 6
3D1 "C4'" "C3'" sing N N 7
3D1 "C4'" "H4'" sing N N 8
3D1 "O4'" "C1'" sing N N 9
3D1 "C1'" N9 sing N N 10
3D1 "C1'" "C2'" sing N N 11
3D1 "C1'" "H1'" sing N N 12
3D1 N9 C4 sing Y N 13
3D1 N9 C8 sing Y N 14
3D1 C4 N3 doub Y N 15
3D1 C4 C5 sing Y N 16
3D1 N3 C2 sing Y N 17
3D1 C2 N1 doub Y N 18
3D1 C2 H2 sing N N 19
3D1 N1 C6 sing Y N 20
3D1 C6 N6 sing N N 21
3D1 C6 C5 doub Y N 22
3D1 N6 HN61 sing N N 23
3D1 N6 HN62 sing N N 24
3D1 C5 N7 sing Y N 25
3D1 N7 C8 doub Y N 26
3D1 C8 H8 sing N N 27
3D1 "C2'" "C3'" sing N N 28
3D1 "C2'" "H2'1" sing N N 29
3D1 "C2'" "H2'2" sing N N 30
3D1 "C3'" "O3'" sing N N 31
3D1 "C3'" "H3'" sing N N 32
3D1 "O3'" H1 sing N N 33
ALA N CA sing N N 34
ALA N H sing N N 35
ALA N H2 sing N N 36
ALA CA C sing N N 37
ALA CA CB sing N N 38
ALA CA HA sing N N 39
ALA C O doub N N 40
ALA C OXT sing N N 41
ALA CB HB1 sing N N 42
ALA CB HB2 sing N N 43
ALA CB HB3 sing N N 44
ALA OXT HXT sing N N 45
ARG N CA sing N N 46
ARG N H sing N N 47
ARG N H2 sing N N 48
ARG CA C sing N N 49
ARG CA CB sing N N 50
ARG CA HA sing N N 51
ARG C O doub N N 52
ARG C OXT sing N N 53
ARG CB CG sing N N 54
ARG CB HB2 sing N N 55
ARG CB HB3 sing N N 56
ARG CG CD sing N N 57
ARG CG HG2 sing N N 58
ARG CG HG3 sing N N 59
ARG CD NE sing N N 60
ARG CD HD2 sing N N 61
ARG CD HD3 sing N N 62
ARG NE CZ sing N N 63
ARG NE HE sing N N 64
ARG CZ NH1 sing N N 65
ARG CZ NH2 doub N N 66
ARG NH1 HH11 sing N N 67
ARG NH1 HH12 sing N N 68
ARG NH2 HH21 sing N N 69
ARG NH2 HH22 sing N N 70
ARG OXT HXT sing N N 71
ASN N CA sing N N 72
ASN N H sing N N 73
ASN N H2 sing N N 74
ASN CA C sing N N 75
ASN CA CB sing N N 76
ASN CA HA sing N N 77
ASN C O doub N N 78
ASN C OXT sing N N 79
ASN CB CG sing N N 80
ASN CB HB2 sing N N 81
ASN CB HB3 sing N N 82
ASN CG OD1 doub N N 83
ASN CG ND2 sing N N 84
ASN ND2 HD21 sing N N 85
ASN ND2 HD22 sing N N 86
ASN OXT HXT sing N N 87
ASP N CA sing N N 88
ASP N H sing N N 89
ASP N H2 sing N N 90
ASP CA C sing N N 91
ASP CA CB sing N N 92
ASP CA HA sing N N 93
ASP C O doub N N 94
ASP C OXT sing N N 95
ASP CB CG sing N N 96
ASP CB HB2 sing N N 97
ASP CB HB3 sing N N 98
ASP CG OD1 doub N N 99
ASP CG OD2 sing N N 100
ASP OD2 HD2 sing N N 101
ASP OXT HXT sing N N 102
CYS N CA sing N N 103
CYS N H sing N N 104
CYS N H2 sing N N 105
CYS CA C sing N N 106
CYS CA CB sing N N 107
CYS CA HA sing N N 108
CYS C O doub N N 109
CYS C OXT sing N N 110
CYS CB SG sing N N 111
CYS CB HB2 sing N N 112
CYS CB HB3 sing N N 113
CYS SG HG sing N N 114
CYS OXT HXT sing N N 115
DA OP3 P sing N N 116
DA OP3 HOP3 sing N N 117
DA P OP1 doub N N 118
DA P OP2 sing N N 119
DA P "O5'" sing N N 120
DA OP2 HOP2 sing N N 121
DA "O5'" "C5'" sing N N 122
DA "C5'" "C4'" sing N N 123
DA "C5'" "H5'" sing N N 124
DA "C5'" "H5''" sing N N 125
DA "C4'" "O4'" sing N N 126
DA "C4'" "C3'" sing N N 127
DA "C4'" "H4'" sing N N 128
DA "O4'" "C1'" sing N N 129
DA "C3'" "O3'" sing N N 130
DA "C3'" "C2'" sing N N 131
DA "C3'" "H3'" sing N N 132
DA "O3'" "HO3'" sing N N 133
DA "C2'" "C1'" sing N N 134
DA "C2'" "H2'" sing N N 135
DA "C2'" "H2''" sing N N 136
DA "C1'" N9 sing N N 137
DA "C1'" "H1'" sing N N 138
DA N9 C8 sing Y N 139
DA N9 C4 sing Y N 140
DA C8 N7 doub Y N 141
DA C8 H8 sing N N 142
DA N7 C5 sing Y N 143
DA C5 C6 sing Y N 144
DA C5 C4 doub Y N 145
DA C6 N6 sing N N 146
DA C6 N1 doub Y N 147
DA N6 H61 sing N N 148
DA N6 H62 sing N N 149
DA N1 C2 sing Y N 150
DA C2 N3 doub Y N 151
DA C2 H2 sing N N 152
DA N3 C4 sing Y N 153
DC OP3 P sing N N 154
DC OP3 HOP3 sing N N 155
DC P OP1 doub N N 156
DC P OP2 sing N N 157
DC P "O5'" sing N N 158
DC OP2 HOP2 sing N N 159
DC "O5'" "C5'" sing N N 160
DC "C5'" "C4'" sing N N 161
DC "C5'" "H5'" sing N N 162
DC "C5'" "H5''" sing N N 163
DC "C4'" "O4'" sing N N 164
DC "C4'" "C3'" sing N N 165
DC "C4'" "H4'" sing N N 166
DC "O4'" "C1'" sing N N 167
DC "C3'" "O3'" sing N N 168
DC "C3'" "C2'" sing N N 169
DC "C3'" "H3'" sing N N 170
DC "O3'" "HO3'" sing N N 171
DC "C2'" "C1'" sing N N 172
DC "C2'" "H2'" sing N N 173
DC "C2'" "H2''" sing N N 174
DC "C1'" N1 sing N N 175
DC "C1'" "H1'" sing N N 176
DC N1 C2 sing N N 177
DC N1 C6 sing N N 178
DC C2 O2 doub N N 179
DC C2 N3 sing N N 180
DC N3 C4 doub N N 181
DC C4 N4 sing N N 182
DC C4 C5 sing N N 183
DC N4 H41 sing N N 184
DC N4 H42 sing N N 185
DC C5 C6 doub N N 186
DC C5 H5 sing N N 187
DC C6 H6 sing N N 188
DG OP3 P sing N N 189
DG OP3 HOP3 sing N N 190
DG P OP1 doub N N 191
DG P OP2 sing N N 192
DG P "O5'" sing N N 193
DG OP2 HOP2 sing N N 194
DG "O5'" "C5'" sing N N 195
DG "C5'" "C4'" sing N N 196
DG "C5'" "H5'" sing N N 197
DG "C5'" "H5''" sing N N 198
DG "C4'" "O4'" sing N N 199
DG "C4'" "C3'" sing N N 200
DG "C4'" "H4'" sing N N 201
DG "O4'" "C1'" sing N N 202
DG "C3'" "O3'" sing N N 203
DG "C3'" "C2'" sing N N 204
DG "C3'" "H3'" sing N N 205
DG "O3'" "HO3'" sing N N 206
DG "C2'" "C1'" sing N N 207
DG "C2'" "H2'" sing N N 208
DG "C2'" "H2''" sing N N 209
DG "C1'" N9 sing N N 210
DG "C1'" "H1'" sing N N 211
DG N9 C8 sing Y N 212
DG N9 C4 sing Y N 213
DG C8 N7 doub Y N 214
DG C8 H8 sing N N 215
DG N7 C5 sing Y N 216
DG C5 C6 sing N N 217
DG C5 C4 doub Y N 218
DG C6 O6 doub N N 219
DG C6 N1 sing N N 220
DG N1 C2 sing N N 221
DG N1 H1 sing N N 222
DG C2 N2 sing N N 223
DG C2 N3 doub N N 224
DG N2 H21 sing N N 225
DG N2 H22 sing N N 226
DG N3 C4 sing N N 227
DT OP3 P sing N N 228
DT OP3 HOP3 sing N N 229
DT P OP1 doub N N 230
DT P OP2 sing N N 231
DT P "O5'" sing N N 232
DT OP2 HOP2 sing N N 233
DT "O5'" "C5'" sing N N 234
DT "C5'" "C4'" sing N N 235
DT "C5'" "H5'" sing N N 236
DT "C5'" "H5''" sing N N 237
DT "C4'" "O4'" sing N N 238
DT "C4'" "C3'" sing N N 239
DT "C4'" "H4'" sing N N 240
DT "O4'" "C1'" sing N N 241
DT "C3'" "O3'" sing N N 242
DT "C3'" "C2'" sing N N 243
DT "C3'" "H3'" sing N N 244
DT "O3'" "HO3'" sing N N 245
DT "C2'" "C1'" sing N N 246
DT "C2'" "H2'" sing N N 247
DT "C2'" "H2''" sing N N 248
DT "C1'" N1 sing N N 249
DT "C1'" "H1'" sing N N 250
DT N1 C2 sing N N 251
DT N1 C6 sing N N 252
DT C2 O2 doub N N 253
DT C2 N3 sing N N 254
DT N3 C4 sing N N 255
DT N3 H3 sing N N 256
DT C4 O4 doub N N 257
DT C4 C5 sing N N 258
DT C5 C7 sing N N 259
DT C5 C6 doub N N 260
DT C7 H71 sing N N 261
DT C7 H72 sing N N 262
DT C7 H73 sing N N 263
DT C6 H6 sing N N 264
DTT S1 C1 sing N N 265
DTT S1 HS1 sing N N 266
DTT C1 C2 sing N N 267
DTT C1 H11 sing N N 268
DTT C1 H12 sing N N 269
DTT C2 O2 sing N N 270
DTT C2 C3 sing N N 271
DTT C2 H2 sing N N 272
DTT O2 HO2 sing N N 273
DTT C3 O3 sing N N 274
DTT C3 C4 sing N N 275
DTT C3 H3 sing N N 276
DTT O3 HO3 sing N N 277
DTT C4 S4 sing N N 278
DTT C4 H41 sing N N 279
DTT C4 H42 sing N N 280
DTT S4 HS2 sing N N 281
DZ4 C2 N1 doub Y N 282
DZ4 N1 C6 sing Y N 283
DZ4 N3 C2 sing Y N 284
DZ4 C2 H2 sing N N 285
DZ4 N3 C4 doub Y N 286
DZ4 N9 C4 sing Y N 287
DZ4 C4 C5 sing Y N 288
DZ4 C5 N7 sing Y N 289
DZ4 C5 C6 doub Y N 290
DZ4 C6 N6 sing N N 291
DZ4 N6 HN6 sing N N 292
DZ4 N6 HN6A sing N N 293
DZ4 C8 N7 doub Y N 294
DZ4 N9 C8 sing Y N 295
DZ4 C8 H8 sing N N 296
DZ4 "C1'" N9 sing N N 297
DZ4 "O5'" PA sing N N 298
DZ4 O1A PA doub N N 299
DZ4 PA O2A sing N N 300
DZ4 PA N3A sing N N 301
DZ4 O1B PB doub N N 302
DZ4 N3A PB sing N N 303
DZ4 PB O2B sing N N 304
DZ4 PB O3B sing N N 305
DZ4 O1G PG doub N N 306
DZ4 PG O3B sing N N 307
DZ4 PG O2G sing N N 308
DZ4 PG O3G sing N N 309
DZ4 "O4'" "C1'" sing N N 310
DZ4 "C1'" "C2'" sing N N 311
DZ4 "C1'" "H1'" sing N N 312
DZ4 "C3'" "C2'" sing N N 313
DZ4 "C2'" "H2'" sing N N 314
DZ4 "C2'" "H2'A" sing N N 315
DZ4 O2A HO2A sing N N 316
DZ4 O2B HO2B sing N N 317
DZ4 O2G HO2G sing N N 318
DZ4 "C4'" "C3'" sing N N 319
DZ4 "C3'" "O3'" sing N N 320
DZ4 "C3'" "H3'" sing N N 321
DZ4 "O3'" "HO3'" sing N N 322
DZ4 N3A HN3A sing N N 323
DZ4 O3G HO3G sing N N 324
DZ4 "O4'" "C4'" sing N N 325
DZ4 "C4'" "C5'" sing N N 326
DZ4 "C4'" "H4'" sing N N 327
DZ4 "C5'" "O5'" sing N N 328
DZ4 "C5'" "H5'" sing N N 329
DZ4 "C5'" "H5'A" sing N N 330
EDO C1 O1 sing N N 331
EDO C1 C2 sing N N 332
EDO C1 H11 sing N N 333
EDO C1 H12 sing N N 334
EDO O1 HO1 sing N N 335
EDO C2 O2 sing N N 336
EDO C2 H21 sing N N 337
EDO C2 H22 sing N N 338
EDO O2 HO2 sing N N 339
GLN N CA sing N N 340
GLN N H sing N N 341
GLN N H2 sing N N 342
GLN CA C sing N N 343
GLN CA CB sing N N 344
GLN CA HA sing N N 345
GLN C O doub N N 346
GLN C OXT sing N N 347
GLN CB CG sing N N 348
GLN CB HB2 sing N N 349
GLN CB HB3 sing N N 350
GLN CG CD sing N N 351
GLN CG HG2 sing N N 352
GLN CG HG3 sing N N 353
GLN CD OE1 doub N N 354
GLN CD NE2 sing N N 355
GLN NE2 HE21 sing N N 356
GLN NE2 HE22 sing N N 357
GLN OXT HXT sing N N 358
GLU N CA sing N N 359
GLU N H sing N N 360
GLU N H2 sing N N 361
GLU CA C sing N N 362
GLU CA CB sing N N 363
GLU CA HA sing N N 364
GLU C O doub N N 365
GLU C OXT sing N N 366
GLU CB CG sing N N 367
GLU CB HB2 sing N N 368
GLU CB HB3 sing N N 369
GLU CG CD sing N N 370
GLU CG HG2 sing N N 371
GLU CG HG3 sing N N 372
GLU CD OE1 doub N N 373
GLU CD OE2 sing N N 374
GLU OE2 HE2 sing N N 375
GLU OXT HXT sing N N 376
GLY N CA sing N N 377
GLY N H sing N N 378
GLY N H2 sing N N 379
GLY CA C sing N N 380
GLY CA HA2 sing N N 381
GLY CA HA3 sing N N 382
GLY C O doub N N 383
GLY C OXT sing N N 384
GLY OXT HXT sing N N 385
GOL C1 O1 sing N N 386
GOL C1 C2 sing N N 387
GOL C1 H11 sing N N 388
GOL C1 H12 sing N N 389
GOL O1 HO1 sing N N 390
GOL C2 O2 sing N N 391
GOL C2 C3 sing N N 392
GOL C2 H2 sing N N 393
GOL O2 HO2 sing N N 394
GOL C3 O3 sing N N 395
GOL C3 H31 sing N N 396
GOL C3 H32 sing N N 397
GOL O3 HO3 sing N N 398
HIS N CA sing N N 399
HIS N H sing N N 400
HIS N H2 sing N N 401
HIS CA C sing N N 402
HIS CA CB sing N N 403
HIS CA HA sing N N 404
HIS C O doub N N 405
HIS C OXT sing N N 406
HIS CB CG sing N N 407
HIS CB HB2 sing N N 408
HIS CB HB3 sing N N 409
HIS CG ND1 sing Y N 410
HIS CG CD2 doub Y N 411
HIS ND1 CE1 doub Y N 412
HIS ND1 HD1 sing N N 413
HIS CD2 NE2 sing Y N 414
HIS CD2 HD2 sing N N 415
HIS CE1 NE2 sing Y N 416
HIS CE1 HE1 sing N N 417
HIS NE2 HE2 sing N N 418
HIS OXT HXT sing N N 419
HOH O H1 sing N N 420
HOH O H2 sing N N 421
ILE N CA sing N N 422
ILE N H sing N N 423
ILE N H2 sing N N 424
ILE CA C sing N N 425
ILE CA CB sing N N 426
ILE CA HA sing N N 427
ILE C O doub N N 428
ILE C OXT sing N N 429
ILE CB CG1 sing N N 430
ILE CB CG2 sing N N 431
ILE CB HB sing N N 432
ILE CG1 CD1 sing N N 433
ILE CG1 HG12 sing N N 434
ILE CG1 HG13 sing N N 435
ILE CG2 HG21 sing N N 436
ILE CG2 HG22 sing N N 437
ILE CG2 HG23 sing N N 438
ILE CD1 HD11 sing N N 439
ILE CD1 HD12 sing N N 440
ILE CD1 HD13 sing N N 441
ILE OXT HXT sing N N 442
LEU N CA sing N N 443
LEU N H sing N N 444
LEU N H2 sing N N 445
LEU CA C sing N N 446
LEU CA CB sing N N 447
LEU CA HA sing N N 448
LEU C O doub N N 449
LEU C OXT sing N N 450
LEU CB CG sing N N 451
LEU CB HB2 sing N N 452
LEU CB HB3 sing N N 453
LEU CG CD1 sing N N 454
LEU CG CD2 sing N N 455
LEU CG HG sing N N 456
LEU CD1 HD11 sing N N 457
LEU CD1 HD12 sing N N 458
LEU CD1 HD13 sing N N 459
LEU CD2 HD21 sing N N 460
LEU CD2 HD22 sing N N 461
LEU CD2 HD23 sing N N 462
LEU OXT HXT sing N N 463
LYS N CA sing N N 464
LYS N H sing N N 465
LYS N H2 sing N N 466
LYS CA C sing N N 467
LYS CA CB sing N N 468
LYS CA HA sing N N 469
LYS C O doub N N 470
LYS C OXT sing N N 471
LYS CB CG sing N N 472
LYS CB HB2 sing N N 473
LYS CB HB3 sing N N 474
LYS CG CD sing N N 475
LYS CG HG2 sing N N 476
LYS CG HG3 sing N N 477
LYS CD CE sing N N 478
LYS CD HD2 sing N N 479
LYS CD HD3 sing N N 480
LYS CE NZ sing N N 481
LYS CE HE2 sing N N 482
LYS CE HE3 sing N N 483
LYS NZ HZ1 sing N N 484
LYS NZ HZ2 sing N N 485
LYS NZ HZ3 sing N N 486
LYS OXT HXT sing N N 487
MET N CA sing N N 488
MET N H sing N N 489
MET N H2 sing N N 490
MET CA C sing N N 491
MET CA CB sing N N 492
MET CA HA sing N N 493
MET C O doub N N 494
MET C OXT sing N N 495
MET CB CG sing N N 496
MET CB HB2 sing N N 497
MET CB HB3 sing N N 498
MET CG SD sing N N 499
MET CG HG2 sing N N 500
MET CG HG3 sing N N 501
MET SD CE sing N N 502
MET CE HE1 sing N N 503
MET CE HE2 sing N N 504
MET CE HE3 sing N N 505
MET OXT HXT sing N N 506
PHE N CA sing N N 507
PHE N H sing N N 508
PHE N H2 sing N N 509
PHE CA C sing N N 510
PHE CA CB sing N N 511
PHE CA HA sing N N 512
PHE C O doub N N 513
PHE C OXT sing N N 514
PHE CB CG sing N N 515
PHE CB HB2 sing N N 516
PHE CB HB3 sing N N 517
PHE CG CD1 doub Y N 518
PHE CG CD2 sing Y N 519
PHE CD1 CE1 sing Y N 520
PHE CD1 HD1 sing N N 521
PHE CD2 CE2 doub Y N 522
PHE CD2 HD2 sing N N 523
PHE CE1 CZ doub Y N 524
PHE CE1 HE1 sing N N 525
PHE CE2 CZ sing Y N 526
PHE CE2 HE2 sing N N 527
PHE CZ HZ sing N N 528
PHE OXT HXT sing N N 529
PRO N CA sing N N 530
PRO N CD sing N N 531
PRO N H sing N N 532
PRO CA C sing N N 533
PRO CA CB sing N N 534
PRO CA HA sing N N 535
PRO C O doub N N 536
PRO C OXT sing N N 537
PRO CB CG sing N N 538
PRO CB HB2 sing N N 539
PRO CB HB3 sing N N 540
PRO CG CD sing N N 541
PRO CG HG2 sing N N 542
PRO CG HG3 sing N N 543
PRO CD HD2 sing N N 544
PRO CD HD3 sing N N 545
PRO OXT HXT sing N N 546
SER N CA sing N N 547
SER N H sing N N 548
SER N H2 sing N N 549
SER CA C sing N N 550
SER CA CB sing N N 551
SER CA HA sing N N 552
SER C O doub N N 553
SER C OXT sing N N 554
SER CB OG sing N N 555
SER CB HB2 sing N N 556
SER CB HB3 sing N N 557
SER OG HG sing N N 558
SER OXT HXT sing N N 559
THR N CA sing N N 560
THR N H sing N N 561
THR N H2 sing N N 562
THR CA C sing N N 563
THR CA CB sing N N 564
THR CA HA sing N N 565
THR C O doub N N 566
THR C OXT sing N N 567
THR CB OG1 sing N N 568
THR CB CG2 sing N N 569
THR CB HB sing N N 570
THR OG1 HG1 sing N N 571
THR CG2 HG21 sing N N 572
THR CG2 HG22 sing N N 573
THR CG2 HG23 sing N N 574
THR OXT HXT sing N N 575
TRP N CA sing N N 576
TRP N H sing N N 577
TRP N H2 sing N N 578
TRP CA C sing N N 579
TRP CA CB sing N N 580
TRP CA HA sing N N 581
TRP C O doub N N 582
TRP C OXT sing N N 583
TRP CB CG sing N N 584
TRP CB HB2 sing N N 585
TRP CB HB3 sing N N 586
TRP CG CD1 doub Y N 587
TRP CG CD2 sing Y N 588
TRP CD1 NE1 sing Y N 589
TRP CD1 HD1 sing N N 590
TRP CD2 CE2 doub Y N 591
TRP CD2 CE3 sing Y N 592
TRP NE1 CE2 sing Y N 593
TRP NE1 HE1 sing N N 594
TRP CE2 CZ2 sing Y N 595
TRP CE3 CZ3 doub Y N 596
TRP CE3 HE3 sing N N 597
TRP CZ2 CH2 doub Y N 598
TRP CZ2 HZ2 sing N N 599
TRP CZ3 CH2 sing Y N 600
TRP CZ3 HZ3 sing N N 601
TRP CH2 HH2 sing N N 602
TRP OXT HXT sing N N 603
TTD P OP1 doub N N 604
TTD P OP2 sing N N 605
TTD P OP3 sing N N 606
TTD P "O5'" sing N N 607
TTD OP2 HOP2 sing N N 608
TTD OP3 HOP3 sing N N 609
TTD "O5'" "C5'" sing N N 610
TTD "C5'" C4R sing N N 611
TTD "C5'" "H5'" sing N N 612
TTD "C5'" "H5''" sing N N 613
TTD C4R "O4'" sing N N 614
TTD C4R C3R sing N N 615
TTD C4R H4R sing N N 616
TTD "O4'" "C1'" sing N N 617
TTD C3R O3R sing N N 618
TTD C3R "C2'" sing N N 619
TTD C3R H3R sing N N 620
TTD O3R PB sing N N 621
TTD "C2'" "C1'" sing N N 622
TTD "C2'" "H2'" sing N N 623
TTD "C2'" "H2''" sing N N 624
TTD "C1'" N1 sing N N 625
TTD "C1'" "H1'" sing N N 626
TTD N1 C2 sing N N 627
TTD N1 C6 sing N N 628
TTD C2 O2 doub N N 629
TTD C2 N3 sing N N 630
TTD N3 C4 sing N N 631
TTD N3 HN3 sing N N 632
TTD C4 O4 doub N N 633
TTD C4 C5 sing N N 634
TTD C5 C5A sing N N 635
TTD C5 C6 sing N N 636
TTD C5 C5T sing N N 637
TTD C5A H5A1 sing N N 638
TTD C5A H5A2 sing N N 639
TTD C5A H5A3 sing N N 640
TTD C6 C6T sing N N 641
TTD C6 H6 sing N N 642
TTD PB O5P doub N N 643
TTD PB O4P sing N N 644
TTD PB O5R sing N N 645
TTD O4P H4P sing N N 646
TTD O5R C5R sing N N 647
TTD C5R "C4'" sing N N 648
TTD C5R H5R1 sing N N 649
TTD C5R H5R2 sing N N 650
TTD O4R C1R sing N N 651
TTD O4R "C4'" sing N N 652
TTD C2R C1R sing N N 653
TTD C2R "C3'" sing N N 654
TTD C2R H2R1 sing N N 655
TTD C2R H2R2 sing N N 656
TTD C1R N1T sing N N 657
TTD C1R H1R sing N N 658
TTD N1T C2T sing N N 659
TTD N1T C6T sing N N 660
TTD C2T O2T doub N N 661
TTD C2T N3T sing N N 662
TTD N3T C4T sing N N 663
TTD N3T HT sing N N 664
TTD C4T O4T doub N N 665
TTD C4T C5T sing N N 666
TTD C5T C5M sing N N 667
TTD C5T C6T sing N N 668
TTD C5M H71 sing N N 669
TTD C5M H72 sing N N 670
TTD C5M H73 sing N N 671
TTD C6T H6T sing N N 672
TTD "C4'" "C3'" sing N N 673
TTD "C4'" "H4'" sing N N 674
TTD "C3'" "O3'" sing N N 675
TTD "C3'" H1 sing N N 676
TTD "O3'" "HO3'" sing N N 677
TYR N CA sing N N 678
TYR N H sing N N 679
TYR N H2 sing N N 680
TYR CA C sing N N 681
TYR CA CB sing N N 682
TYR CA HA sing N N 683
TYR C O doub N N 684
TYR C OXT sing N N 685
TYR CB CG sing N N 686
TYR CB HB2 sing N N 687
TYR CB HB3 sing N N 688
TYR CG CD1 doub Y N 689
TYR CG CD2 sing Y N 690
TYR CD1 CE1 sing Y N 691
TYR CD1 HD1 sing N N 692
TYR CD2 CE2 doub Y N 693
TYR CD2 HD2 sing N N 694
TYR CE1 CZ doub Y N 695
TYR CE1 HE1 sing N N 696
TYR CE2 CZ sing Y N 697
TYR CE2 HE2 sing N N 698
TYR CZ OH sing N N 699
TYR OH HH sing N N 700
TYR OXT HXT sing N N 701
VAL N CA sing N N 702
VAL N H sing N N 703
VAL N H2 sing N N 704
VAL CA C sing N N 705
VAL CA CB sing N N 706
VAL CA HA sing N N 707
VAL C O doub N N 708
VAL C OXT sing N N 709
VAL CB CG1 sing N N 710
VAL CB CG2 sing N N 711
VAL CB HB sing N N 712
VAL CG1 HG11 sing N N 713
VAL CG1 HG12 sing N N 714
VAL CG1 HG13 sing N N 715
VAL CG2 HG21 sing N N 716
VAL CG2 HG22 sing N N 717
VAL CG2 HG23 sing N N 718
VAL OXT HXT sing N N 719
#
_ndb_struct_conf_na.entry_id 3SI8
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 B DA 6 1_555 C DT 8 1_555 0.221 0.013 -0.588 -19.362 -1.414 10.913 1 T_DA6:DT8_P T 6 ? P 8 ? 20 1
1 B DT 7 1_555 C DA 7 1_555 0.116 -0.318 -0.266 2.985 4.651 -0.933 2 T_DT7:DA7_P T 7 ? P 7 ? 20 1
1 B DG 8 1_555 C DC 6 1_555 0.002 -0.124 -0.719 -7.983 -8.041 4.101 3 T_DG8:DC6_P T 8 ? P 6 ? 19 1
1 B DA 9 1_555 C DT 5 1_555 -0.201 0.001 -0.571 -0.412 -12.340 4.049 4 T_DA9:DT5_P T 9 ? P 5 ? 20 1
1 B DC 10 1_555 C DG 4 1_555 0.039 -0.277 -0.516 6.271 -10.967 -2.338 5 T_DC10:DG4_P T 10 ? P 4 ? 19 1
1 B DG 11 1_555 C DC 3 1_555 -0.122 -0.249 0.350 2.182 -4.160 -4.198 6 T_DG11:DC3_P T 11 ? P 3 ? 19 1
1 B DC 12 1_555 C DG 2 1_555 0.311 -0.037 -0.030 13.367 0.790 -4.584 7 T_DC12:DG2_P T 12 ? P 2 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 B DA 6 1_555 C DT 8 1_555 B DT 7 1_555 C DA 7 1_555 -1.131 -0.646 2.944 -0.185 11.502 24.148 -3.973 2.406 2.400 25.709 0.414
26.711 1 TT_DA6DT7:DA7DT8_PP T 6 ? P 8 ? T 7 ? P 7 ?
1 B DT 7 1_555 C DA 7 1_555 B DG 8 1_555 C DC 6 1_555 0.049 -0.819 3.791 1.693 7.640 30.045 -3.193 0.277 3.480 14.432 -3.198
31.025 2 TT_DT7DG8:DC6DA7_PP T 7 ? P 7 ? T 8 ? P 6 ?
1 B DG 8 1_555 C DC 6 1_555 B DA 9 1_555 C DT 5 1_555 -0.258 -0.342 3.264 -0.679 1.161 32.028 -0.828 0.345 3.254 2.103 1.230
32.056 3 TT_DG8DA9:DT5DC6_PP T 8 ? P 6 ? T 9 ? P 5 ?
1 B DA 9 1_555 C DT 5 1_555 B DC 10 1_555 C DG 4 1_555 -0.780 -0.124 3.189 -0.118 3.323 32.470 -0.783 1.368 3.164 5.924 0.211
32.635 4 TT_DA9DC10:DG4DT5_PP T 9 ? P 5 ? T 10 ? P 4 ?
1 B DC 10 1_555 C DG 4 1_555 B DG 11 1_555 C DC 3 1_555 0.255 0.769 3.550 -4.967 9.117 35.159 -0.169 -1.164 3.566 14.701 8.009
36.614 5 TT_DC10DG11:DC3DG4_PP T 10 ? P 4 ? T 11 ? P 3 ?
1 B DG 11 1_555 C DC 3 1_555 B DC 12 1_555 C DG 2 1_555 0.254 -0.035 3.083 1.583 11.473 27.680 -2.307 -0.183 2.853 22.759 -3.139
29.962 6 TT_DG11DC12:DG2DC3_PP T 11 ? P 3 ? T 12 ? P 2 ?
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3MR2
_pdbx_initial_refinement_model.details 'pdb entry 3MR2'
#
_atom_sites.entry_id 3SI8
_atom_sites.fract_transf_matrix[1][1] 0.016330
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.012460
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.007155
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CO
MG
N
O
P
S
#
loop_