data_3SI8 # _entry.id 3SI8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SI8 pdb_00003si8 10.2210/pdb3si8/pdb NDB NA1176 ? ? RCSB RCSB066234 ? ? WWPDB D_1000066234 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-03 2 'Structure model' 1 1 2023-09-13 3 'Structure model' 1 2 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Source and taxonomy' 7 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' pdbx_initial_refinement_model 6 2 'Structure model' pdbx_struct_conn_angle 7 2 'Structure model' struct_conn 8 2 'Structure model' struct_ref_seq_dif 9 2 'Structure model' struct_site 10 3 'Structure model' entity 11 3 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.pdbx_synonyms' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 2 'Structure model' '_pdbx_struct_conn_angle.value' 24 2 'Structure model' '_struct_conn.pdbx_dist_value' 25 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 2 'Structure model' '_struct_ref_seq_dif.details' 41 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 2 'Structure model' '_struct_site.pdbx_auth_seq_id' 44 3 'Structure model' '_entity.details' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2011-08-03 _pdbx_database_PDB_obs_spr.pdb_id 3SI8 _pdbx_database_PDB_obs_spr.replace_pdb_id 3MR4 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SI8 _pdbx_database_status.recvd_initial_deposition_date 2011-06-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3MR2 . unspecified PDB 3MR3 . unspecified PDB 3MR5 . unspecified PDB 3MR6 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Biertumpfel, C.' 1 'Zhao, Y.' 2 'Kondo, Y.' 3 'Ramon-Maiques, S.' 4 'Gregory, M.' 5 'Lee, J.Y.' 6 'Masutani, C.' 7 'Lehmann, A.R.' 8 'Hanaoka, F.' 9 'Yang, W.' 10 # _citation.id primary _citation.title 'Structure and mechanism of human DNA polymerase eta.' _citation.journal_abbrev Nature _citation.journal_volume 465 _citation.page_first 1044 _citation.page_last 1048 _citation.year 2010 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20577208 _citation.pdbx_database_id_DOI 10.1038/nature09196 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Biertumpfel, C.' 1 ? primary 'Zhao, Y.' 2 ? primary 'Kondo, Y.' 3 ? primary 'Ramon-Maiques, S.' 4 ? primary 'Gregory, M.' 5 ? primary 'Lee, J.Y.' 6 ? primary 'Masutani, C.' 7 ? primary 'Lehmann, A.R.' 8 ? primary 'Hanaoka, F.' 9 ? primary 'Yang, W.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase eta' 48617.707 1 2.7.7.7 ? 'unp residues 1-432' ? 2 polymer syn ;DNA (5'-D(*TP*A*AP*CP*(TTD)P*AP*TP*GP*AP*CP*GP*C)-3') ; 3950.599 1 ? ? ? 'DNA template (chain T)' 3 polymer syn ;DNA (5'-D(*TP*GP*CP*GP*TP*CP*AP*TP*A)-3') ; 2730.810 1 ? ? ? 'DNA primer (chain P)' 4 non-polymer syn "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine" 490.197 1 ? ? ? "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine" 5 non-polymer syn GLYCEROL 92.094 8 ? ? ? ? 6 non-polymer syn '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' 251.242 1 ? ? ? ? 7 non-polymer syn 2,3-DIHYDROXY-1,4-DITHIOBUTANE 154.251 2 ? ? ? ? 8 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 9 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 10 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ? 11 water nat water 18.015 126 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RAD30 homolog A, Xeroderma pigmentosum variant type protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPHMATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLL AQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTA EETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTL VSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPK TIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSH DAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSAS ; ;GPHMATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLL AQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTA EETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTL VSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPK TIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSH DAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSAS ; A ? 2 polydeoxyribonucleotide no yes '(DT)(DA)(DA)(DC)(TTD)(DA)(DT)(DG)(DA)(DC)(DG)(DC)' TAACTATGACGC T ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DG)(DT)(DC)(DA)(DT)(DA)' TGCGTCATA P ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine" DZ4 5 GLYCEROL GOL 6 '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' 3D1 7 2,3-DIHYDROXY-1,4-DITHIOBUTANE DTT 8 1,2-ETHANEDIOL EDO 9 'MAGNESIUM ION' MG 10 'COBALT (II) ION' CO 11 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 THR n 1 7 GLY n 1 8 GLN n 1 9 ASP n 1 10 ARG n 1 11 VAL n 1 12 VAL n 1 13 ALA n 1 14 LEU n 1 15 VAL n 1 16 ASP n 1 17 MET n 1 18 ASP n 1 19 CYS n 1 20 PHE n 1 21 PHE n 1 22 VAL n 1 23 GLN n 1 24 VAL n 1 25 GLU n 1 26 GLN n 1 27 ARG n 1 28 GLN n 1 29 ASN n 1 30 PRO n 1 31 HIS n 1 32 LEU n 1 33 ARG n 1 34 ASN n 1 35 LYS n 1 36 PRO n 1 37 CYS n 1 38 ALA n 1 39 VAL n 1 40 VAL n 1 41 GLN n 1 42 TYR n 1 43 LYS n 1 44 SER n 1 45 TRP n 1 46 LYS n 1 47 GLY n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 ILE n 1 52 ALA n 1 53 VAL n 1 54 SER n 1 55 TYR n 1 56 GLU n 1 57 ALA n 1 58 ARG n 1 59 ALA n 1 60 PHE n 1 61 GLY n 1 62 VAL n 1 63 THR n 1 64 ARG n 1 65 SER n 1 66 MET n 1 67 TRP n 1 68 ALA n 1 69 ASP n 1 70 ASP n 1 71 ALA n 1 72 LYS n 1 73 LYS n 1 74 LEU n 1 75 CYS n 1 76 PRO n 1 77 ASP n 1 78 LEU n 1 79 LEU n 1 80 LEU n 1 81 ALA n 1 82 GLN n 1 83 VAL n 1 84 ARG n 1 85 GLU n 1 86 SER n 1 87 ARG n 1 88 GLY n 1 89 LYS n 1 90 ALA n 1 91 ASN n 1 92 LEU n 1 93 THR n 1 94 LYS n 1 95 TYR n 1 96 ARG n 1 97 GLU n 1 98 ALA n 1 99 SER n 1 100 VAL n 1 101 GLU n 1 102 VAL n 1 103 MET n 1 104 GLU n 1 105 ILE n 1 106 MET n 1 107 SER n 1 108 ARG n 1 109 PHE n 1 110 ALA n 1 111 VAL n 1 112 ILE n 1 113 GLU n 1 114 ARG n 1 115 ALA n 1 116 SER n 1 117 ILE n 1 118 ASP n 1 119 GLU n 1 120 ALA n 1 121 TYR n 1 122 VAL n 1 123 ASP n 1 124 LEU n 1 125 THR n 1 126 SER n 1 127 ALA n 1 128 VAL n 1 129 GLN n 1 130 GLU n 1 131 ARG n 1 132 LEU n 1 133 GLN n 1 134 LYS n 1 135 LEU n 1 136 GLN n 1 137 GLY n 1 138 GLN n 1 139 PRO n 1 140 ILE n 1 141 SER n 1 142 ALA n 1 143 ASP n 1 144 LEU n 1 145 LEU n 1 146 PRO n 1 147 SER n 1 148 THR n 1 149 TYR n 1 150 ILE n 1 151 GLU n 1 152 GLY n 1 153 LEU n 1 154 PRO n 1 155 GLN n 1 156 GLY n 1 157 PRO n 1 158 THR n 1 159 THR n 1 160 ALA n 1 161 GLU n 1 162 GLU n 1 163 THR n 1 164 VAL n 1 165 GLN n 1 166 LYS n 1 167 GLU n 1 168 GLY n 1 169 MET n 1 170 ARG n 1 171 LYS n 1 172 GLN n 1 173 GLY n 1 174 LEU n 1 175 PHE n 1 176 GLN n 1 177 TRP n 1 178 LEU n 1 179 ASP n 1 180 SER n 1 181 LEU n 1 182 GLN n 1 183 ILE n 1 184 ASP n 1 185 ASN n 1 186 LEU n 1 187 THR n 1 188 SER n 1 189 PRO n 1 190 ASP n 1 191 LEU n 1 192 GLN n 1 193 LEU n 1 194 THR n 1 195 VAL n 1 196 GLY n 1 197 ALA n 1 198 VAL n 1 199 ILE n 1 200 VAL n 1 201 GLU n 1 202 GLU n 1 203 MET n 1 204 ARG n 1 205 ALA n 1 206 ALA n 1 207 ILE n 1 208 GLU n 1 209 ARG n 1 210 GLU n 1 211 THR n 1 212 GLY n 1 213 PHE n 1 214 GLN n 1 215 CYS n 1 216 SER n 1 217 ALA n 1 218 GLY n 1 219 ILE n 1 220 SER n 1 221 HIS n 1 222 ASN n 1 223 LYS n 1 224 VAL n 1 225 LEU n 1 226 ALA n 1 227 LYS n 1 228 LEU n 1 229 ALA n 1 230 CYS n 1 231 GLY n 1 232 LEU n 1 233 ASN n 1 234 LYS n 1 235 PRO n 1 236 ASN n 1 237 ARG n 1 238 GLN n 1 239 THR n 1 240 LEU n 1 241 VAL n 1 242 SER n 1 243 HIS n 1 244 GLY n 1 245 SER n 1 246 VAL n 1 247 PRO n 1 248 GLN n 1 249 LEU n 1 250 PHE n 1 251 SER n 1 252 GLN n 1 253 MET n 1 254 PRO n 1 255 ILE n 1 256 ARG n 1 257 LYS n 1 258 ILE n 1 259 ARG n 1 260 SER n 1 261 LEU n 1 262 GLY n 1 263 GLY n 1 264 LYS n 1 265 LEU n 1 266 GLY n 1 267 ALA n 1 268 SER n 1 269 VAL n 1 270 ILE n 1 271 GLU n 1 272 ILE n 1 273 LEU n 1 274 GLY n 1 275 ILE n 1 276 GLU n 1 277 TYR n 1 278 MET n 1 279 GLY n 1 280 GLU n 1 281 LEU n 1 282 THR n 1 283 GLN n 1 284 PHE n 1 285 THR n 1 286 GLU n 1 287 SER n 1 288 GLN n 1 289 LEU n 1 290 GLN n 1 291 SER n 1 292 HIS n 1 293 PHE n 1 294 GLY n 1 295 GLU n 1 296 LYS n 1 297 ASN n 1 298 GLY n 1 299 SER n 1 300 TRP n 1 301 LEU n 1 302 TYR n 1 303 ALA n 1 304 MET n 1 305 CYS n 1 306 ARG n 1 307 GLY n 1 308 ILE n 1 309 GLU n 1 310 HIS n 1 311 ASP n 1 312 PRO n 1 313 VAL n 1 314 LYS n 1 315 PRO n 1 316 ARG n 1 317 GLN n 1 318 LEU n 1 319 PRO n 1 320 LYS n 1 321 THR n 1 322 ILE n 1 323 GLY n 1 324 CYS n 1 325 SER n 1 326 LYS n 1 327 ASN n 1 328 PHE n 1 329 PRO n 1 330 GLY n 1 331 LYS n 1 332 THR n 1 333 ALA n 1 334 LEU n 1 335 ALA n 1 336 THR n 1 337 ARG n 1 338 GLU n 1 339 GLN n 1 340 VAL n 1 341 GLN n 1 342 TRP n 1 343 TRP n 1 344 LEU n 1 345 LEU n 1 346 GLN n 1 347 LEU n 1 348 ALA n 1 349 GLN n 1 350 GLU n 1 351 LEU n 1 352 GLU n 1 353 GLU n 1 354 ARG n 1 355 LEU n 1 356 THR n 1 357 LYS n 1 358 ASP n 1 359 ARG n 1 360 ASN n 1 361 ASP n 1 362 ASN n 1 363 ASP n 1 364 ARG n 1 365 VAL n 1 366 ALA n 1 367 THR n 1 368 GLN n 1 369 LEU n 1 370 VAL n 1 371 VAL n 1 372 SER n 1 373 ILE n 1 374 ARG n 1 375 VAL n 1 376 GLN n 1 377 GLY n 1 378 ASP n 1 379 LYS n 1 380 ARG n 1 381 LEU n 1 382 SER n 1 383 SER n 1 384 LEU n 1 385 ARG n 1 386 ARG n 1 387 CYS n 1 388 CYS n 1 389 ALA n 1 390 LEU n 1 391 THR n 1 392 ARG n 1 393 TYR n 1 394 ASP n 1 395 ALA n 1 396 HIS n 1 397 LYS n 1 398 MET n 1 399 SER n 1 400 HIS n 1 401 ASP n 1 402 ALA n 1 403 PHE n 1 404 THR n 1 405 VAL n 1 406 ILE n 1 407 LYS n 1 408 ASN n 1 409 CYS n 1 410 ASN n 1 411 THR n 1 412 SER n 1 413 GLY n 1 414 ILE n 1 415 GLN n 1 416 THR n 1 417 GLU n 1 418 TRP n 1 419 SER n 1 420 PRO n 1 421 PRO n 1 422 LEU n 1 423 THR n 1 424 MET n 1 425 LEU n 1 426 PHE n 1 427 LEU n 1 428 CYS n 1 429 ALA n 1 430 THR n 1 431 LYS n 1 432 PHE n 1 433 SER n 1 434 ALA n 1 435 SER n 2 1 DT n 2 2 DA n 2 3 DA n 2 4 DC n 2 5 TTD n 2 6 DA n 2 7 DT n 2 8 DG n 2 9 DA n 2 10 DC n 2 11 DG n 2 12 DC n 3 1 DT n 3 2 DG n 3 3 DC n 3 4 DG n 3 5 DT n 3 6 DC n 3 7 DA n 3 8 DT n 3 9 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'POLH, RAD30, RAD30A, XPV' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'chemically synthesized' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET28a _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'DNA oligonucleotide with thymine dimer (cyclobutane pyrimidine dimer, CPD)' 3 1 sample ? ? ? ? ? 'DNA oligonucleotide' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3D1 non-polymer . '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' "2'-DEOXYADENOSINE" 'C10 H13 N5 O3' 251.242 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DTT non-polymer . 2,3-DIHYDROXY-1,4-DITHIOBUTANE 1,4-DITHIOTHREITOL 'C4 H10 O2 S2' 154.251 DZ4 non-polymer . "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine" ? 'C10 H17 N6 O11 P3' 490.197 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TTD 'DNA linking' n 'CIS-SYN CYCLOBUTANE THYMINE DIMER' ;[(3S,4S,9S,10R,12R,15AR,18BS,18CS)-3,7-DIHYDROXY-15A,15B-DIMETHYL-7-OXIDO-13,15,16,18-TETRAOXOHEXADECAHYDRO-1H-1,4-EPOX Y-9,12-METHANO-6,8,11-TRIOXA-12A,14,17,18A-TETRAAZA-7-PHOSPHACYCLOHEXADECA[1,2,3,4-DEF]BIPHENYLEN-10-YL]METHYL DIHYDROGEN PHOSPHATE ; 'C20 H28 N4 O15 P2' 626.402 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 PRO 2 -1 -1 PRO PRO A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 THR 6 3 3 THR THR A . n A 1 7 GLY 7 4 4 GLY GLY A . n A 1 8 GLN 8 5 5 GLN GLN A . n A 1 9 ASP 9 6 6 ASP ASP A . n A 1 10 ARG 10 7 7 ARG ARG A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 VAL 12 9 9 VAL VAL A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 ASP 16 13 13 ASP ASP A . n A 1 17 MET 17 14 14 MET MET A . n A 1 18 ASP 18 15 15 ASP ASP A . n A 1 19 CYS 19 16 16 CYS CYS A . n A 1 20 PHE 20 17 17 PHE PHE A . n A 1 21 PHE 21 18 18 PHE PHE A . n A 1 22 VAL 22 19 19 VAL VAL A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 VAL 24 21 21 VAL VAL A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 GLN 26 23 23 GLN GLN A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 GLN 28 25 25 GLN GLN A . n A 1 29 ASN 29 26 26 ASN ASN A . n A 1 30 PRO 30 27 27 PRO PRO A . n A 1 31 HIS 31 28 28 HIS HIS A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 ARG 33 30 30 ARG ARG A . n A 1 34 ASN 34 31 31 ASN ASN A . n A 1 35 LYS 35 32 32 LYS LYS A . n A 1 36 PRO 36 33 33 PRO PRO A . n A 1 37 CYS 37 34 34 CYS CYS A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 VAL 39 36 36 VAL VAL A . n A 1 40 VAL 40 37 37 VAL VAL A . n A 1 41 GLN 41 38 38 GLN GLN A . n A 1 42 TYR 42 39 39 TYR TYR A . n A 1 43 LYS 43 40 40 LYS LYS A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 TRP 45 42 42 TRP TRP A . n A 1 46 LYS 46 43 43 LYS LYS A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 GLY 48 45 45 GLY GLY A . n A 1 49 GLY 49 46 46 GLY GLY A . n A 1 50 ILE 50 47 47 ILE ILE A . n A 1 51 ILE 51 48 48 ILE ILE A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 SER 54 51 51 SER SER A . n A 1 55 TYR 55 52 52 TYR TYR A . n A 1 56 GLU 56 53 53 GLU GLU A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 ARG 58 55 55 ARG ARG A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 PHE 60 57 57 PHE PHE A . n A 1 61 GLY 61 58 58 GLY GLY A . n A 1 62 VAL 62 59 59 VAL VAL A . n A 1 63 THR 63 60 60 THR THR A . n A 1 64 ARG 64 61 61 ARG ARG A . n A 1 65 SER 65 62 62 SER SER A . n A 1 66 MET 66 63 63 MET MET A . n A 1 67 TRP 67 64 64 TRP TRP A . n A 1 68 ALA 68 65 65 ALA ALA A . n A 1 69 ASP 69 66 66 ASP ASP A . n A 1 70 ASP 70 67 67 ASP ASP A . n A 1 71 ALA 71 68 68 ALA ALA A . n A 1 72 LYS 72 69 69 LYS LYS A . n A 1 73 LYS 73 70 70 LYS LYS A . n A 1 74 LEU 74 71 71 LEU LEU A . n A 1 75 CYS 75 72 72 CYS CYS A . n A 1 76 PRO 76 73 73 PRO PRO A . n A 1 77 ASP 77 74 74 ASP ASP A . n A 1 78 LEU 78 75 75 LEU LEU A . n A 1 79 LEU 79 76 76 LEU LEU A . n A 1 80 LEU 80 77 77 LEU LEU A . n A 1 81 ALA 81 78 78 ALA ALA A . n A 1 82 GLN 82 79 79 GLN GLN A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 GLU 85 82 82 GLU GLU A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 ARG 87 84 84 ARG ARG A . n A 1 88 GLY 88 85 85 GLY GLY A . n A 1 89 LYS 89 86 86 LYS LYS A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 ASN 91 88 88 ASN ASN A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 THR 93 90 90 THR THR A . n A 1 94 LYS 94 91 91 LYS LYS A . n A 1 95 TYR 95 92 92 TYR TYR A . n A 1 96 ARG 96 93 93 ARG ARG A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 ALA 98 95 95 ALA ALA A . n A 1 99 SER 99 96 96 SER SER A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 GLU 101 98 98 GLU GLU A . n A 1 102 VAL 102 99 99 VAL VAL A . n A 1 103 MET 103 100 100 MET MET A . n A 1 104 GLU 104 101 101 GLU GLU A . n A 1 105 ILE 105 102 102 ILE ILE A . n A 1 106 MET 106 103 103 MET MET A . n A 1 107 SER 107 104 104 SER SER A . n A 1 108 ARG 108 105 105 ARG ARG A . n A 1 109 PHE 109 106 106 PHE PHE A . n A 1 110 ALA 110 107 107 ALA ALA A . n A 1 111 VAL 111 108 108 VAL VAL A . n A 1 112 ILE 112 109 109 ILE ILE A . n A 1 113 GLU 113 110 110 GLU GLU A . n A 1 114 ARG 114 111 111 ARG ARG A . n A 1 115 ALA 115 112 112 ALA ALA A . n A 1 116 SER 116 113 113 SER SER A . n A 1 117 ILE 117 114 114 ILE ILE A . n A 1 118 ASP 118 115 115 ASP ASP A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 ALA 120 117 117 ALA ALA A . n A 1 121 TYR 121 118 118 TYR TYR A . n A 1 122 VAL 122 119 119 VAL VAL A . n A 1 123 ASP 123 120 120 ASP ASP A . n A 1 124 LEU 124 121 121 LEU LEU A . n A 1 125 THR 125 122 122 THR THR A . n A 1 126 SER 126 123 123 SER SER A . n A 1 127 ALA 127 124 124 ALA ALA A . n A 1 128 VAL 128 125 125 VAL VAL A . n A 1 129 GLN 129 126 126 GLN GLN A . n A 1 130 GLU 130 127 127 GLU GLU A . n A 1 131 ARG 131 128 128 ARG ARG A . n A 1 132 LEU 132 129 129 LEU LEU A . n A 1 133 GLN 133 130 130 GLN GLN A . n A 1 134 LYS 134 131 131 LYS LYS A . n A 1 135 LEU 135 132 132 LEU LEU A . n A 1 136 GLN 136 133 133 GLN GLN A . n A 1 137 GLY 137 134 134 GLY GLY A . n A 1 138 GLN 138 135 135 GLN GLN A . n A 1 139 PRO 139 136 136 PRO PRO A . n A 1 140 ILE 140 137 137 ILE ILE A . n A 1 141 SER 141 138 138 SER SER A . n A 1 142 ALA 142 139 139 ALA ALA A . n A 1 143 ASP 143 140 140 ASP ASP A . n A 1 144 LEU 144 141 141 LEU LEU A . n A 1 145 LEU 145 142 142 LEU LEU A . n A 1 146 PRO 146 143 143 PRO PRO A . n A 1 147 SER 147 144 144 SER SER A . n A 1 148 THR 148 145 145 THR THR A . n A 1 149 TYR 149 146 146 TYR TYR A . n A 1 150 ILE 150 147 147 ILE ILE A . n A 1 151 GLU 151 148 148 GLU GLU A . n A 1 152 GLY 152 149 149 GLY GLY A . n A 1 153 LEU 153 150 150 LEU LEU A . n A 1 154 PRO 154 151 151 PRO PRO A . n A 1 155 GLN 155 152 152 GLN GLN A . n A 1 156 GLY 156 153 153 GLY GLY A . n A 1 157 PRO 157 154 ? ? ? A . n A 1 158 THR 158 155 ? ? ? A . n A 1 159 THR 159 156 ? ? ? A . n A 1 160 ALA 160 157 ? ? ? A . n A 1 161 GLU 161 158 ? ? ? A . n A 1 162 GLU 162 159 ? ? ? A . n A 1 163 THR 163 160 ? ? ? A . n A 1 164 VAL 164 161 161 VAL ALA A . n A 1 165 GLN 165 162 162 GLN ALA A . n A 1 166 LYS 166 163 163 LYS LYS A . n A 1 167 GLU 167 164 164 GLU GLU A . n A 1 168 GLY 168 165 165 GLY GLY A . n A 1 169 MET 169 166 166 MET MET A . n A 1 170 ARG 170 167 167 ARG ARG A . n A 1 171 LYS 171 168 168 LYS LYS A . n A 1 172 GLN 172 169 169 GLN GLN A . n A 1 173 GLY 173 170 170 GLY GLY A . n A 1 174 LEU 174 171 171 LEU LEU A . n A 1 175 PHE 175 172 172 PHE PHE A . n A 1 176 GLN 176 173 173 GLN GLN A . n A 1 177 TRP 177 174 174 TRP TRP A . n A 1 178 LEU 178 175 175 LEU LEU A . n A 1 179 ASP 179 176 176 ASP ASP A . n A 1 180 SER 180 177 177 SER SER A . n A 1 181 LEU 181 178 178 LEU LEU A . n A 1 182 GLN 182 179 179 GLN GLN A . n A 1 183 ILE 183 180 180 ILE ILE A . n A 1 184 ASP 184 181 181 ASP ASP A . n A 1 185 ASN 185 182 182 ASN ASN A . n A 1 186 LEU 186 183 183 LEU LEU A . n A 1 187 THR 187 184 184 THR THR A . n A 1 188 SER 188 185 185 SER SER A . n A 1 189 PRO 189 186 186 PRO PRO A . n A 1 190 ASP 190 187 187 ASP ASP A . n A 1 191 LEU 191 188 188 LEU LEU A . n A 1 192 GLN 192 189 189 GLN GLN A . n A 1 193 LEU 193 190 190 LEU LEU A . n A 1 194 THR 194 191 191 THR THR A . n A 1 195 VAL 195 192 192 VAL VAL A . n A 1 196 GLY 196 193 193 GLY GLY A . n A 1 197 ALA 197 194 194 ALA ALA A . n A 1 198 VAL 198 195 195 VAL VAL A . n A 1 199 ILE 199 196 196 ILE ILE A . n A 1 200 VAL 200 197 197 VAL VAL A . n A 1 201 GLU 201 198 198 GLU GLU A . n A 1 202 GLU 202 199 199 GLU GLU A . n A 1 203 MET 203 200 200 MET MET A . n A 1 204 ARG 204 201 201 ARG ARG A . n A 1 205 ALA 205 202 202 ALA ALA A . n A 1 206 ALA 206 203 203 ALA ALA A . n A 1 207 ILE 207 204 204 ILE ILE A . n A 1 208 GLU 208 205 205 GLU GLU A . n A 1 209 ARG 209 206 206 ARG ARG A . n A 1 210 GLU 210 207 207 GLU GLU A . n A 1 211 THR 211 208 208 THR THR A . n A 1 212 GLY 212 209 209 GLY GLY A . n A 1 213 PHE 213 210 210 PHE PHE A . n A 1 214 GLN 214 211 211 GLN GLN A . n A 1 215 CYS 215 212 212 CYS CYS A . n A 1 216 SER 216 213 213 SER SER A . n A 1 217 ALA 217 214 214 ALA ALA A . n A 1 218 GLY 218 215 215 GLY GLY A . n A 1 219 ILE 219 216 216 ILE ILE A . n A 1 220 SER 220 217 217 SER SER A . n A 1 221 HIS 221 218 218 HIS HIS A . n A 1 222 ASN 222 219 219 ASN ASN A . n A 1 223 LYS 223 220 220 LYS LYS A . n A 1 224 VAL 224 221 221 VAL VAL A . n A 1 225 LEU 225 222 222 LEU LEU A . n A 1 226 ALA 226 223 223 ALA ALA A . n A 1 227 LYS 227 224 224 LYS LYS A . n A 1 228 LEU 228 225 225 LEU LEU A . n A 1 229 ALA 229 226 226 ALA ALA A . n A 1 230 CYS 230 227 227 CYS CYS A . n A 1 231 GLY 231 228 228 GLY GLY A . n A 1 232 LEU 232 229 229 LEU LEU A . n A 1 233 ASN 233 230 230 ASN ASN A . n A 1 234 LYS 234 231 231 LYS LYS A . n A 1 235 PRO 235 232 232 PRO PRO A . n A 1 236 ASN 236 233 233 ASN ASN A . n A 1 237 ARG 237 234 234 ARG ARG A . n A 1 238 GLN 238 235 235 GLN GLN A . n A 1 239 THR 239 236 236 THR THR A . n A 1 240 LEU 240 237 237 LEU LEU A . n A 1 241 VAL 241 238 238 VAL VAL A . n A 1 242 SER 242 239 239 SER SER A . n A 1 243 HIS 243 240 240 HIS HIS A . n A 1 244 GLY 244 241 241 GLY GLY A . n A 1 245 SER 245 242 242 SER SER A . n A 1 246 VAL 246 243 243 VAL VAL A . n A 1 247 PRO 247 244 244 PRO PRO A . n A 1 248 GLN 248 245 245 GLN GLN A . n A 1 249 LEU 249 246 246 LEU LEU A . n A 1 250 PHE 250 247 247 PHE PHE A . n A 1 251 SER 251 248 248 SER SER A . n A 1 252 GLN 252 249 249 GLN GLN A . n A 1 253 MET 253 250 250 MET MET A . n A 1 254 PRO 254 251 251 PRO PRO A . n A 1 255 ILE 255 252 252 ILE ILE A . n A 1 256 ARG 256 253 253 ARG ARG A . n A 1 257 LYS 257 254 254 LYS LYS A . n A 1 258 ILE 258 255 255 ILE ILE A . n A 1 259 ARG 259 256 256 ARG ARG A . n A 1 260 SER 260 257 257 SER SER A . n A 1 261 LEU 261 258 258 LEU LEU A . n A 1 262 GLY 262 259 259 GLY GLY A . n A 1 263 GLY 263 260 260 GLY GLY A . n A 1 264 LYS 264 261 261 LYS LYS A . n A 1 265 LEU 265 262 262 LEU LEU A . n A 1 266 GLY 266 263 263 GLY GLY A . n A 1 267 ALA 267 264 264 ALA ALA A . n A 1 268 SER 268 265 265 SER SER A . n A 1 269 VAL 269 266 266 VAL VAL A . n A 1 270 ILE 270 267 267 ILE ILE A . n A 1 271 GLU 271 268 268 GLU GLU A . n A 1 272 ILE 272 269 269 ILE ILE A . n A 1 273 LEU 273 270 270 LEU LEU A . n A 1 274 GLY 274 271 271 GLY GLY A . n A 1 275 ILE 275 272 272 ILE ILE A . n A 1 276 GLU 276 273 273 GLU GLU A . n A 1 277 TYR 277 274 274 TYR TYR A . n A 1 278 MET 278 275 275 MET MET A . n A 1 279 GLY 279 276 276 GLY GLY A . n A 1 280 GLU 280 277 277 GLU GLU A . n A 1 281 LEU 281 278 278 LEU LEU A . n A 1 282 THR 282 279 279 THR THR A . n A 1 283 GLN 283 280 280 GLN GLN A . n A 1 284 PHE 284 281 281 PHE PHE A . n A 1 285 THR 285 282 282 THR THR A . n A 1 286 GLU 286 283 283 GLU GLU A . n A 1 287 SER 287 284 284 SER SER A . n A 1 288 GLN 288 285 285 GLN GLN A . n A 1 289 LEU 289 286 286 LEU LEU A . n A 1 290 GLN 290 287 287 GLN GLN A . n A 1 291 SER 291 288 288 SER SER A . n A 1 292 HIS 292 289 289 HIS HIS A . n A 1 293 PHE 293 290 290 PHE PHE A . n A 1 294 GLY 294 291 291 GLY GLY A . n A 1 295 GLU 295 292 292 GLU GLU A . n A 1 296 LYS 296 293 293 LYS LYS A . n A 1 297 ASN 297 294 294 ASN ASN A . n A 1 298 GLY 298 295 295 GLY GLY A . n A 1 299 SER 299 296 296 SER SER A . n A 1 300 TRP 300 297 297 TRP TRP A . n A 1 301 LEU 301 298 298 LEU LEU A . n A 1 302 TYR 302 299 299 TYR TYR A . n A 1 303 ALA 303 300 300 ALA ALA A . n A 1 304 MET 304 301 301 MET MET A . n A 1 305 CYS 305 302 302 CYS CYS A . n A 1 306 ARG 306 303 303 ARG ARG A . n A 1 307 GLY 307 304 304 GLY GLY A . n A 1 308 ILE 308 305 305 ILE ILE A . n A 1 309 GLU 309 306 306 GLU GLU A . n A 1 310 HIS 310 307 307 HIS HIS A . n A 1 311 ASP 311 308 308 ASP ASP A . n A 1 312 PRO 312 309 309 PRO PRO A . n A 1 313 VAL 313 310 310 VAL VAL A . n A 1 314 LYS 314 311 311 LYS LYS A . n A 1 315 PRO 315 312 312 PRO PRO A . n A 1 316 ARG 316 313 313 ARG ARG A . n A 1 317 GLN 317 314 314 GLN GLN A . n A 1 318 LEU 318 315 315 LEU LEU A . n A 1 319 PRO 319 316 316 PRO PRO A . n A 1 320 LYS 320 317 317 LYS LYS A . n A 1 321 THR 321 318 318 THR THR A . n A 1 322 ILE 322 319 319 ILE ILE A . n A 1 323 GLY 323 320 320 GLY GLY A . n A 1 324 CYS 324 321 321 CYS CYS A . n A 1 325 SER 325 322 322 SER SER A . n A 1 326 LYS 326 323 323 LYS LYS A . n A 1 327 ASN 327 324 324 ASN ASN A . n A 1 328 PHE 328 325 325 PHE PHE A . n A 1 329 PRO 329 326 326 PRO PRO A . n A 1 330 GLY 330 327 327 GLY GLY A . n A 1 331 LYS 331 328 328 LYS LYS A . n A 1 332 THR 332 329 329 THR THR A . n A 1 333 ALA 333 330 330 ALA ALA A . n A 1 334 LEU 334 331 331 LEU LEU A . n A 1 335 ALA 335 332 332 ALA ALA A . n A 1 336 THR 336 333 333 THR THR A . n A 1 337 ARG 337 334 334 ARG ARG A . n A 1 338 GLU 338 335 335 GLU GLU A . n A 1 339 GLN 339 336 336 GLN GLN A . n A 1 340 VAL 340 337 337 VAL VAL A . n A 1 341 GLN 341 338 338 GLN GLN A . n A 1 342 TRP 342 339 339 TRP TRP A . n A 1 343 TRP 343 340 340 TRP TRP A . n A 1 344 LEU 344 341 341 LEU LEU A . n A 1 345 LEU 345 342 342 LEU LEU A . n A 1 346 GLN 346 343 343 GLN GLN A . n A 1 347 LEU 347 344 344 LEU LEU A . n A 1 348 ALA 348 345 345 ALA ALA A . n A 1 349 GLN 349 346 346 GLN GLN A . n A 1 350 GLU 350 347 347 GLU GLU A . n A 1 351 LEU 351 348 348 LEU LEU A . n A 1 352 GLU 352 349 349 GLU GLU A . n A 1 353 GLU 353 350 350 GLU GLU A . n A 1 354 ARG 354 351 351 ARG ARG A . n A 1 355 LEU 355 352 352 LEU LEU A . n A 1 356 THR 356 353 353 THR THR A . n A 1 357 LYS 357 354 354 LYS LYS A . n A 1 358 ASP 358 355 355 ASP ASP A . n A 1 359 ARG 359 356 356 ARG ARG A . n A 1 360 ASN 360 357 357 ASN ASN A . n A 1 361 ASP 361 358 358 ASP ASP A . n A 1 362 ASN 362 359 359 ASN ASN A . n A 1 363 ASP 363 360 360 ASP ASP A . n A 1 364 ARG 364 361 361 ARG ARG A . n A 1 365 VAL 365 362 362 VAL VAL A . n A 1 366 ALA 366 363 363 ALA ALA A . n A 1 367 THR 367 364 364 THR THR A . n A 1 368 GLN 368 365 365 GLN GLN A . n A 1 369 LEU 369 366 366 LEU LEU A . n A 1 370 VAL 370 367 367 VAL VAL A . n A 1 371 VAL 371 368 368 VAL VAL A . n A 1 372 SER 372 369 369 SER SER A . n A 1 373 ILE 373 370 370 ILE ILE A . n A 1 374 ARG 374 371 371 ARG ARG A . n A 1 375 VAL 375 372 372 VAL VAL A . n A 1 376 GLN 376 373 373 GLN GLN A . n A 1 377 GLY 377 374 374 GLY GLY A . n A 1 378 ASP 378 375 375 ASP ASP A . n A 1 379 LYS 379 376 376 LYS ALA A . n A 1 380 ARG 380 377 377 ARG ARG A . n A 1 381 LEU 381 378 378 LEU LEU A . n A 1 382 SER 382 379 379 SER SER A . n A 1 383 SER 383 380 380 SER SER A . n A 1 384 LEU 384 381 381 LEU LEU A . n A 1 385 ARG 385 382 382 ARG ARG A . n A 1 386 ARG 386 383 383 ARG ARG A . n A 1 387 CYS 387 384 384 CYS CYS A . n A 1 388 CYS 388 385 385 CYS CYS A . n A 1 389 ALA 389 386 386 ALA ALA A . n A 1 390 LEU 390 387 387 LEU LEU A . n A 1 391 THR 391 388 388 THR THR A . n A 1 392 ARG 392 389 389 ARG ARG A . n A 1 393 TYR 393 390 390 TYR TYR A . n A 1 394 ASP 394 391 391 ASP ASP A . n A 1 395 ALA 395 392 392 ALA ALA A . n A 1 396 HIS 396 393 393 HIS HIS A . n A 1 397 LYS 397 394 394 LYS LYS A . n A 1 398 MET 398 395 395 MET MET A . n A 1 399 SER 399 396 396 SER SER A . n A 1 400 HIS 400 397 397 HIS HIS A . n A 1 401 ASP 401 398 398 ASP ASP A . n A 1 402 ALA 402 399 399 ALA ALA A . n A 1 403 PHE 403 400 400 PHE PHE A . n A 1 404 THR 404 401 401 THR THR A . n A 1 405 VAL 405 402 402 VAL VAL A . n A 1 406 ILE 406 403 403 ILE ILE A . n A 1 407 LYS 407 404 404 LYS LYS A . n A 1 408 ASN 408 405 405 ASN ASN A . n A 1 409 CYS 409 406 406 CYS CYS A . n A 1 410 ASN 410 407 407 ASN ASN A . n A 1 411 THR 411 408 ? ? ? A . n A 1 412 SER 412 409 ? ? ? A . n A 1 413 GLY 413 410 ? ? ? A . n A 1 414 ILE 414 411 411 ILE ILE A . n A 1 415 GLN 415 412 412 GLN GLN A . n A 1 416 THR 416 413 413 THR THR A . n A 1 417 GLU 417 414 414 GLU GLU A . n A 1 418 TRP 418 415 415 TRP TRP A . n A 1 419 SER 419 416 416 SER SER A . n A 1 420 PRO 420 417 417 PRO PRO A . n A 1 421 PRO 421 418 418 PRO PRO A . n A 1 422 LEU 422 419 419 LEU LEU A . n A 1 423 THR 423 420 420 THR THR A . n A 1 424 MET 424 421 421 MET MET A . n A 1 425 LEU 425 422 422 LEU LEU A . n A 1 426 PHE 426 423 423 PHE PHE A . n A 1 427 LEU 427 424 424 LEU LEU A . n A 1 428 CYS 428 425 425 CYS CYS A . n A 1 429 ALA 429 426 426 ALA ALA A . n A 1 430 THR 430 427 427 THR THR A . n A 1 431 LYS 431 428 428 LYS LYS A . n A 1 432 PHE 432 429 429 PHE PHE A . n A 1 433 SER 433 430 430 SER SER A . n A 1 434 ALA 434 431 ? ? ? A . n A 1 435 SER 435 432 ? ? ? A . n B 2 1 DT 1 1 ? ? ? T . n B 2 2 DA 2 2 ? ? ? T . n B 2 3 DA 3 3 3 DA DA T . n B 2 4 DC 4 4 4 DC DC T . n B 2 5 TTD 5 5 5 TTD TTD T . n B 2 6 DA 6 6 6 DA DA T . n B 2 7 DT 7 7 7 DT DT T . n B 2 8 DG 8 8 8 DG DG T . n B 2 9 DA 9 9 9 DA DA T . n B 2 10 DC 10 10 10 DC DC T . n B 2 11 DG 11 11 11 DG DG T . n B 2 12 DC 12 12 12 DC DC T . n C 3 1 DT 1 1 1 DT DT P . n C 3 2 DG 2 2 2 DG DG P . n C 3 3 DC 3 3 3 DC DC P . n C 3 4 DG 4 4 4 DG DG P . n C 3 5 DT 5 5 5 DT DT P . n C 3 6 DC 6 6 6 DC DC P . n C 3 7 DA 7 7 7 DA DA P . n C 3 8 DT 8 8 8 DT DT P . n C 3 9 DA 9 9 9 DA DA P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DZ4 1 433 1 DZ4 DZ4 A . E 5 GOL 1 434 1 GOL GOL A . F 5 GOL 1 435 2 GOL GOL A . G 5 GOL 1 436 3 GOL GOL A . H 5 GOL 1 437 4 GOL GOL A . I 6 3D1 1 438 5 3D1 3D1 A . J 5 GOL 1 439 6 GOL GOL A . K 5 GOL 1 440 7 GOL GOL A . L 5 GOL 1 441 8 GOL GOL A . M 5 GOL 1 442 9 GOL GOL A . N 7 DTT 1 443 10 DTT DTT A . O 7 DTT 1 444 11 DTT DTT A . P 8 EDO 1 445 12 EDO EDO A . Q 8 EDO 1 446 13 EDO EDO A . R 8 EDO 1 447 14 EDO EDO A . S 8 EDO 1 448 15 EDO EDO A . T 8 EDO 1 449 16 EDO EDO A . U 9 MG 1 450 1 MG MG A . V 9 MG 1 451 2 MG MG A . W 10 CO 1 452 3 CO CO A . X 11 HOH 1 453 1 HOH HOH A . X 11 HOH 2 454 3 HOH HOH A . X 11 HOH 3 455 4 HOH HOH A . X 11 HOH 4 456 5 HOH HOH A . X 11 HOH 5 457 6 HOH HOH A . X 11 HOH 6 458 7 HOH HOH A . X 11 HOH 7 459 8 HOH HOH A . X 11 HOH 8 460 9 HOH HOH A . X 11 HOH 9 461 10 HOH HOH A . X 11 HOH 10 462 11 HOH HOH A . X 11 HOH 11 463 12 HOH HOH A . X 11 HOH 12 464 13 HOH HOH A . X 11 HOH 13 465 14 HOH HOH A . X 11 HOH 14 466 15 HOH HOH A . X 11 HOH 15 467 16 HOH HOH A . X 11 HOH 16 468 17 HOH HOH A . X 11 HOH 17 469 18 HOH HOH A . X 11 HOH 18 470 19 HOH HOH A . X 11 HOH 19 471 20 HOH HOH A . X 11 HOH 20 472 21 HOH HOH A . X 11 HOH 21 473 22 HOH HOH A . X 11 HOH 22 474 23 HOH HOH A . X 11 HOH 23 475 24 HOH HOH A . X 11 HOH 24 476 25 HOH HOH A . X 11 HOH 25 477 26 HOH HOH A . X 11 HOH 26 478 27 HOH HOH A . X 11 HOH 27 479 28 HOH HOH A . X 11 HOH 28 480 29 HOH HOH A . X 11 HOH 29 481 30 HOH HOH A . X 11 HOH 30 482 31 HOH HOH A . X 11 HOH 31 483 32 HOH HOH A . X 11 HOH 32 484 33 HOH HOH A . X 11 HOH 33 485 34 HOH HOH A . X 11 HOH 34 486 35 HOH HOH A . X 11 HOH 35 487 36 HOH HOH A . X 11 HOH 36 488 37 HOH HOH A . X 11 HOH 37 489 38 HOH HOH A . X 11 HOH 38 490 39 HOH HOH A . X 11 HOH 39 491 40 HOH HOH A . X 11 HOH 40 492 42 HOH HOH A . X 11 HOH 41 493 43 HOH HOH A . X 11 HOH 42 494 44 HOH HOH A . X 11 HOH 43 495 45 HOH HOH A . X 11 HOH 44 496 46 HOH HOH A . X 11 HOH 45 497 47 HOH HOH A . X 11 HOH 46 498 48 HOH HOH A . X 11 HOH 47 499 49 HOH HOH A . X 11 HOH 48 500 51 HOH HOH A . X 11 HOH 49 501 52 HOH HOH A . X 11 HOH 50 502 54 HOH HOH A . X 11 HOH 51 503 55 HOH HOH A . X 11 HOH 52 504 56 HOH HOH A . X 11 HOH 53 505 57 HOH HOH A . X 11 HOH 54 506 58 HOH HOH A . X 11 HOH 55 507 59 HOH HOH A . X 11 HOH 56 508 60 HOH HOH A . X 11 HOH 57 509 61 HOH HOH A . X 11 HOH 58 510 62 HOH HOH A . X 11 HOH 59 511 63 HOH HOH A . X 11 HOH 60 512 64 HOH HOH A . X 11 HOH 61 513 65 HOH HOH A . X 11 HOH 62 514 66 HOH HOH A . X 11 HOH 63 515 67 HOH HOH A . X 11 HOH 64 516 68 HOH HOH A . X 11 HOH 65 517 69 HOH HOH A . X 11 HOH 66 518 70 HOH HOH A . X 11 HOH 67 519 71 HOH HOH A . X 11 HOH 68 520 75 HOH HOH A . X 11 HOH 69 521 76 HOH HOH A . X 11 HOH 70 522 77 HOH HOH A . X 11 HOH 71 523 78 HOH HOH A . X 11 HOH 72 524 79 HOH HOH A . X 11 HOH 73 525 80 HOH HOH A . X 11 HOH 74 526 82 HOH HOH A . X 11 HOH 75 527 83 HOH HOH A . X 11 HOH 76 528 84 HOH HOH A . X 11 HOH 77 529 85 HOH HOH A . X 11 HOH 78 530 87 HOH HOH A . X 11 HOH 79 531 88 HOH HOH A . X 11 HOH 80 532 89 HOH HOH A . X 11 HOH 81 533 90 HOH HOH A . X 11 HOH 82 534 91 HOH HOH A . X 11 HOH 83 535 92 HOH HOH A . X 11 HOH 84 536 93 HOH HOH A . X 11 HOH 85 537 94 HOH HOH A . X 11 HOH 86 538 95 HOH HOH A . X 11 HOH 87 539 96 HOH HOH A . X 11 HOH 88 540 99 HOH HOH A . X 11 HOH 89 541 100 HOH HOH A . X 11 HOH 90 542 101 HOH HOH A . X 11 HOH 91 543 102 HOH HOH A . X 11 HOH 92 544 103 HOH HOH A . X 11 HOH 93 545 104 HOH HOH A . X 11 HOH 94 546 106 HOH HOH A . X 11 HOH 95 547 108 HOH HOH A . X 11 HOH 96 548 109 HOH HOH A . X 11 HOH 97 549 110 HOH HOH A . X 11 HOH 98 550 111 HOH HOH A . X 11 HOH 99 551 112 HOH HOH A . X 11 HOH 100 552 113 HOH HOH A . X 11 HOH 101 553 114 HOH HOH A . X 11 HOH 102 554 115 HOH HOH A . X 11 HOH 103 555 116 HOH HOH A . X 11 HOH 104 556 117 HOH HOH A . X 11 HOH 105 557 118 HOH HOH A . X 11 HOH 106 558 120 HOH HOH A . X 11 HOH 107 559 121 HOH HOH A . X 11 HOH 108 560 122 HOH HOH A . X 11 HOH 109 561 123 HOH HOH A . X 11 HOH 110 562 124 HOH HOH A . X 11 HOH 111 563 126 HOH HOH A . X 11 HOH 112 564 127 HOH HOH A . Y 11 HOH 1 41 41 HOH HOH T . Y 11 HOH 2 74 74 HOH HOH T . Y 11 HOH 3 86 86 HOH HOH T . Y 11 HOH 4 98 98 HOH HOH T . Y 11 HOH 5 105 105 HOH HOH T . Y 11 HOH 6 107 107 HOH HOH T . Y 11 HOH 7 119 119 HOH HOH T . Z 11 HOH 1 10 2 HOH HOH P . Z 11 HOH 2 50 50 HOH HOH P . Z 11 HOH 3 53 53 HOH HOH P . Z 11 HOH 4 72 72 HOH HOH P . Z 11 HOH 5 73 73 HOH HOH P . Z 11 HOH 6 81 81 HOH HOH P . Z 11 HOH 7 97 97 HOH HOH P . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 161 ? CG1 ? A VAL 164 CG1 2 1 Y 1 A VAL 161 ? CG2 ? A VAL 164 CG2 3 1 Y 1 A GLN 162 ? CG ? A GLN 165 CG 4 1 Y 1 A GLN 162 ? CD ? A GLN 165 CD 5 1 Y 1 A GLN 162 ? OE1 ? A GLN 165 OE1 6 1 Y 1 A GLN 162 ? NE2 ? A GLN 165 NE2 7 1 Y 1 A LYS 376 ? CG ? A LYS 379 CG 8 1 Y 1 A LYS 376 ? CD ? A LYS 379 CD 9 1 Y 1 A LYS 376 ? CE ? A LYS 379 CE 10 1 Y 1 A LYS 376 ? NZ ? A LYS 379 NZ 11 1 Y 1 T DA 3 ? P ? B DA 3 P 12 1 Y 1 T DA 3 ? OP1 ? B DA 3 OP1 13 1 Y 1 T DA 3 ? OP2 ? B DA 3 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 3SI8 _cell.length_a 61.236 _cell.length_b 80.259 _cell.length_c 139.759 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SI8 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3SI8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.11 _exptl_crystal.density_percent_sol 60.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '0.1 M MES, 5 mM MgCl2, 19-21% (w/v) PEG 2K-MME, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3SI8 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.15 _reflns.number_obs 37705 _reflns.number_all 38213 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_Rsym_value 0.086 _reflns.pdbx_netI_over_sigmaI 12.43 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.25 _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs 0.593 _reflns_shell.pdbx_Rsym_value 0.593 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SI8 _refine.ls_number_reflns_obs 37705 _refine.ls_number_reflns_all 37705 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2022865.43 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.28 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 98.6 _refine.ls_R_factor_obs 0.241 _refine.ls_R_factor_all 0.245 _refine.ls_R_factor_R_work 0.241 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.7 _refine.ls_number_reflns_R_free 2896 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 24.59 _refine.aniso_B[2][2] -4.76 _refine.aniso_B[3][3] -19.82 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 80.5258 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'pdb entry 3MR2' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3SI8 _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.61 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.60 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3309 _refine_hist.pdbx_number_atoms_nucleic_acid 402 _refine_hist.pdbx_number_atoms_ligand 135 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 3972 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 26.28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.007 ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.4 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 22.8 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 2.02 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' c_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' c_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.15 _refine_ls_shell.d_res_low 2.28 _refine_ls_shell.number_reflns_R_work 5550 _refine_ls_shell.R_factor_R_work 0.442 _refine_ls_shell.percent_reflns_obs 96.9 _refine_ls_shell.R_factor_R_free 0.441 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 8.3 _refine_ls_shell.number_reflns_R_free 502 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_cb10.param dna-rna_cb10.top 'X-RAY DIFFRACTION' 3 ligands0220d.param ligands0220d.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 water_rep.param water_rep.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3SI8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3SI8 _struct.title ;Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SI8 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text ;protein-DNA complex, multiple domains, three are alpha/beta fold and one of the four is helical fold, DNA polymerase, DNA binding, Mg2+ and dNTP binding, affinity tag is added and partially removed at the N-terminal end, nucleus, TRANSFERASE-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 7 ? O N N 7 ? P N N 8 ? Q N N 8 ? R N N 8 ? S N N 8 ? T N N 8 ? U N N 9 ? V N N 9 ? W N N 10 ? X N N 11 ? Y N N 11 ? Z N N 11 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP POLH_HUMAN Q9Y253 1 ;MATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQV RESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEET VQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSH GSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIG CSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAF TVIKNCNTSGIQTEWSPPLTMLFLCATKFSAS ; 1 ? 2 PDB 3SI8 3SI8 2 TAACTATGACGC ? ? 3 PDB 3SI8 3SI8 3 TGCGTCATA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3SI8 A 4 ? 435 ? Q9Y253 1 ? 432 ? 1 432 2 2 3SI8 T 1 ? 12 ? 3SI8 1 ? 12 ? 1 12 3 3 3SI8 P 1 ? 9 ? 3SI8 1 ? 9 ? 1 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SI8 GLY A 1 ? UNP Q9Y253 ? ? 'expression tag' -2 1 1 3SI8 PRO A 2 ? UNP Q9Y253 ? ? 'expression tag' -1 2 1 3SI8 HIS A 3 ? UNP Q9Y253 ? ? 'expression tag' 0 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7890 ? 1 MORE -43 ? 1 'SSA (A^2)' 22380 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 19 ? ASN A 29 ? CYS A 16 ASN A 26 1 ? 11 HELX_P HELX_P2 2 PRO A 30 ? ARG A 33 ? PRO A 27 ARG A 30 5 ? 4 HELX_P HELX_P3 3 SER A 54 ? ALA A 59 ? SER A 51 ALA A 56 1 ? 6 HELX_P HELX_P4 4 TRP A 67 ? CYS A 75 ? TRP A 64 CYS A 72 1 ? 9 HELX_P HELX_P5 5 LEU A 92 ? ALA A 110 ? LEU A 89 ALA A 107 1 ? 19 HELX_P HELX_P6 6 LEU A 124 ? GLN A 136 ? LEU A 121 GLN A 133 1 ? 13 HELX_P HELX_P7 7 SER A 141 ? LEU A 145 ? SER A 138 LEU A 142 5 ? 5 HELX_P HELX_P8 8 GLN A 165 ? SER A 180 ? GLN A 162 SER A 177 1 ? 16 HELX_P HELX_P9 9 SER A 188 ? GLY A 212 ? SER A 185 GLY A 209 1 ? 25 HELX_P HELX_P10 10 ASN A 222 ? GLY A 231 ? ASN A 219 GLY A 228 1 ? 10 HELX_P HELX_P11 11 SER A 242 ? GLY A 244 ? SER A 239 GLY A 241 5 ? 3 HELX_P HELX_P12 12 SER A 245 ? GLN A 252 ? SER A 242 GLN A 249 1 ? 8 HELX_P HELX_P13 13 PRO A 254 ? ILE A 258 ? PRO A 251 ILE A 255 5 ? 5 HELX_P HELX_P14 14 GLY A 263 ? GLY A 274 ? GLY A 260 GLY A 271 1 ? 12 HELX_P HELX_P15 15 TYR A 277 ? PHE A 284 ? TYR A 274 PHE A 281 5 ? 8 HELX_P HELX_P16 16 THR A 285 ? GLY A 294 ? THR A 282 GLY A 291 1 ? 10 HELX_P HELX_P17 17 GLY A 294 ? CYS A 305 ? GLY A 291 CYS A 302 1 ? 12 HELX_P HELX_P18 18 PRO A 329 ? ALA A 333 ? PRO A 326 ALA A 330 5 ? 5 HELX_P HELX_P19 19 THR A 336 ? ASP A 363 ? THR A 333 ASP A 360 1 ? 28 HELX_P HELX_P20 20 ASP A 394 ? ASN A 410 ? ASP A 391 ASN A 407 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 4 "O3'" ? ? ? 1_555 B TTD 5 P ? ? T DC 4 T TTD 5 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? B TTD 5 "O3'" ? ? ? 1_555 B DA 6 P ? ? T TTD 5 T DA 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? metalc1 metalc ? ? A ASP 16 OD1 ? ? ? 1_555 U MG . MG ? ? A ASP 13 A MG 450 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc2 metalc ? ? A ASP 16 OD2 ? ? ? 1_555 V MG . MG ? ? A ASP 13 A MG 451 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc3 metalc ? ? A MET 17 O ? ? ? 1_555 U MG . MG ? ? A MET 14 A MG 450 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc4 metalc ? ? A ASP 118 OD1 ? ? ? 1_555 U MG . MG ? ? A ASP 115 A MG 450 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc5 metalc ? ? A ASP 118 OD2 ? ? ? 1_555 V MG . MG ? ? A ASP 115 A MG 451 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc6 metalc ? ? A GLU 119 OE2 ? ? ? 1_555 V MG . MG ? ? A GLU 116 A MG 451 1_555 ? ? ? ? ? ? ? 1.947 ? ? metalc7 metalc ? ? A HIS 396 NE2 ? ? ? 1_555 W CO . CO ? ? A HIS 393 A CO 452 1_555 ? ? ? ? ? ? ? 1.919 ? ? metalc8 metalc ? ? A HIS 400 NE2 ? ? ? 1_555 W CO . CO ? ? A HIS 397 A CO 452 1_555 ? ? ? ? ? ? ? 1.863 ? ? metalc9 metalc ? ? D DZ4 . O1G ? ? ? 1_555 U MG . MG ? ? A DZ4 433 A MG 450 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc10 metalc ? ? D DZ4 . O1A ? ? ? 1_555 U MG . MG ? ? A DZ4 433 A MG 450 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc11 metalc ? ? D DZ4 . O1B ? ? ? 1_555 U MG . MG ? ? A DZ4 433 A MG 450 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc12 metalc ? ? D DZ4 . O1A ? ? ? 1_555 V MG . MG ? ? A DZ4 433 A MG 451 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc13 metalc ? ? V MG . MG ? ? ? 1_555 X HOH . O ? ? A MG 451 A HOH 495 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc14 metalc ? ? V MG . MG ? ? ? 1_555 C DA 9 "O3'" ? ? A MG 451 P DA 9 1_555 ? ? ? ? ? ? ? 2.241 ? ? hydrog1 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 8 N3 ? ? T DA 6 P DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 8 O4 ? ? T DA 6 P DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 7 N1 ? ? T DT 7 P DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 7 N6 ? ? T DT 7 P DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 6 N3 ? ? T DG 8 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 6 O2 ? ? T DG 8 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 6 N4 ? ? T DG 8 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 5 N3 ? ? T DA 9 P DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 5 O4 ? ? T DA 9 P DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 10 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 10 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 10 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? T DG 11 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? T DG 11 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? T DG 11 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 2 N1 ? ? T DC 12 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 2 O6 ? ? T DC 12 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 2 N2 ? ? T DC 12 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O ? A MET 17 ? A MET 14 ? 1_555 73.3 ? 2 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 91.8 ? 3 O ? A MET 17 ? A MET 14 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 84.2 ? 4 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 91.1 ? 5 O ? A MET 17 ? A MET 14 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 101.7 ? 6 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 174.0 ? 7 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 112.5 ? 8 O ? A MET 17 ? A MET 14 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 169.6 ? 9 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 86.9 ? 10 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 87.1 ? 11 OD1 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 164.5 ? 12 O ? A MET 17 ? A MET 14 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 96.5 ? 13 OD1 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 98.9 ? 14 O1G ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 79.3 ? 15 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? U MG . ? A MG 450 ? 1_555 O1B ? D DZ4 . ? A DZ4 433 ? 1_555 79.5 ? 16 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 87.2 ? 17 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 87.3 ? 18 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 93.8 ? 19 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 95.5 ? 20 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 98.5 ? 21 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 167.5 ? 22 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O ? X HOH . ? A HOH 495 ? 1_555 83.3 ? 23 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O ? X HOH . ? A HOH 495 ? 1_555 170.1 ? 24 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O ? X HOH . ? A HOH 495 ? 1_555 88.6 ? 25 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 O ? X HOH . ? A HOH 495 ? 1_555 79.7 ? 26 OD2 ? A ASP 16 ? A ASP 13 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 175.8 ? 27 OD2 ? A ASP 118 ? A ASP 115 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 95.4 ? 28 OE2 ? A GLU 119 ? A GLU 116 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 89.2 ? 29 O1A ? D DZ4 . ? A DZ4 433 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 87.4 ? 30 O ? X HOH . ? A HOH 495 ? 1_555 MG ? V MG . ? A MG 451 ? 1_555 "O3'" ? C DA 9 ? P DA 9 ? 1_555 94.2 ? 31 NE2 ? A HIS 396 ? A HIS 393 ? 1_555 CO ? W CO . ? A CO 452 ? 1_555 NE2 ? A HIS 400 ? A HIS 397 ? 1_555 105.2 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 153 A . ? LEU 150 A PRO 154 A ? PRO 151 A 1 -0.01 2 LYS 234 A . ? LYS 231 A PRO 235 A ? PRO 232 A 1 0.48 3 SER 419 A . ? SER 416 A PRO 420 A ? PRO 417 A 1 -0.47 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 112 ? SER A 116 ? ILE A 109 SER A 113 A 2 GLU A 119 ? ASP A 123 ? GLU A 116 ASP A 120 A 3 VAL A 12 ? MET A 17 ? VAL A 9 MET A 14 A 4 CYS A 215 ? SER A 220 ? CYS A 212 SER A 217 A 5 GLN A 238 ? LEU A 240 ? GLN A 235 LEU A 237 A 6 THR A 148 ? ILE A 150 ? THR A 145 ILE A 147 B 1 ILE A 50 ? VAL A 53 ? ILE A 47 VAL A 50 B 2 CYS A 37 ? VAL A 40 ? CYS A 34 VAL A 37 B 3 LEU A 79 ? GLN A 82 ? LEU A 76 GLN A 79 C 1 GLU A 85 ? SER A 86 ? GLU A 82 SER A 83 C 2 LYS A 89 ? ALA A 90 ? LYS A 86 ALA A 87 D 1 ILE A 322 ? ASN A 327 ? ILE A 319 ASN A 324 D 2 LEU A 422 ? SER A 433 ? LEU A 419 SER A 430 D 3 VAL A 365 ? VAL A 375 ? VAL A 362 VAL A 372 D 4 LEU A 384 ? ALA A 389 ? LEU A 381 ALA A 386 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 113 ? N GLU A 110 O TYR A 121 ? O TYR A 118 A 2 3 O VAL A 122 ? O VAL A 119 N ALA A 13 ? N ALA A 10 A 3 4 N VAL A 12 ? N VAL A 9 O SER A 220 ? O SER A 217 A 4 5 N ILE A 219 ? N ILE A 216 O THR A 239 ? O THR A 236 A 5 6 O LEU A 240 ? O LEU A 237 N TYR A 149 ? N TYR A 146 B 1 2 O ILE A 51 ? O ILE A 48 N VAL A 39 ? N VAL A 36 B 2 3 N VAL A 40 ? N VAL A 37 O ALA A 81 ? O ALA A 78 C 1 2 N SER A 86 ? N SER A 83 O LYS A 89 ? O LYS A 86 D 1 2 N ILE A 322 ? N ILE A 319 O ALA A 429 ? O ALA A 426 D 2 3 O CYS A 428 ? O CYS A 425 N VAL A 370 ? N VAL A 367 D 3 4 N VAL A 371 ? N VAL A 368 O ARG A 386 ? O ARG A 383 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DZ4 433 ? 18 'BINDING SITE FOR RESIDUE DZ4 A 433' AC2 Software A GOL 434 ? 4 'BINDING SITE FOR RESIDUE GOL A 434' AC3 Software A GOL 435 ? 3 'BINDING SITE FOR RESIDUE GOL A 435' AC4 Software A GOL 436 ? 2 'BINDING SITE FOR RESIDUE GOL A 436' AC5 Software A GOL 437 ? 8 'BINDING SITE FOR RESIDUE GOL A 437' AC6 Software A 3D1 438 ? 5 'BINDING SITE FOR RESIDUE 3D1 A 438' AC7 Software A GOL 439 ? 5 'BINDING SITE FOR RESIDUE GOL A 439' AC8 Software A GOL 440 ? 3 'BINDING SITE FOR RESIDUE GOL A 440' AC9 Software A GOL 441 ? 2 'BINDING SITE FOR RESIDUE GOL A 441' BC1 Software A GOL 442 ? 6 'BINDING SITE FOR RESIDUE GOL A 442' BC2 Software A DTT 443 ? 5 'BINDING SITE FOR RESIDUE DTT A 443' BC3 Software A DTT 444 ? 6 'BINDING SITE FOR RESIDUE DTT A 444' BC4 Software A EDO 445 ? 3 'BINDING SITE FOR RESIDUE EDO A 445' BC5 Software A EDO 446 ? 5 'BINDING SITE FOR RESIDUE EDO A 446' BC6 Software A EDO 447 ? 1 'BINDING SITE FOR RESIDUE EDO A 447' BC7 Software A EDO 448 ? 2 'BINDING SITE FOR RESIDUE EDO A 448' BC8 Software A EDO 449 ? 3 'BINDING SITE FOR RESIDUE EDO A 449' BC9 Software A MG 450 ? 5 'BINDING SITE FOR RESIDUE MG A 450' CC1 Software A MG 451 ? 7 'BINDING SITE FOR RESIDUE MG A 451' CC2 Software A CO 452 ? 4 'BINDING SITE FOR RESIDUE CO A 452' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 ASP A 16 ? ASP A 13 . ? 1_555 ? 2 AC1 18 MET A 17 ? MET A 14 . ? 1_555 ? 3 AC1 18 ASP A 18 ? ASP A 15 . ? 1_555 ? 4 AC1 18 CYS A 19 ? CYS A 16 . ? 1_555 ? 5 AC1 18 PHE A 20 ? PHE A 17 . ? 1_555 ? 6 AC1 18 PHE A 21 ? PHE A 18 . ? 1_555 ? 7 AC1 18 ALA A 52 ? ALA A 49 . ? 1_555 ? 8 AC1 18 TYR A 55 ? TYR A 52 . ? 1_555 ? 9 AC1 18 ARG A 58 ? ARG A 55 . ? 1_555 ? 10 AC1 18 ARG A 64 ? ARG A 61 . ? 1_555 ? 11 AC1 18 ASP A 118 ? ASP A 115 . ? 1_555 ? 12 AC1 18 LYS A 234 ? LYS A 231 . ? 1_555 ? 13 AC1 18 MG U . ? MG A 450 . ? 1_555 ? 14 AC1 18 MG V . ? MG A 451 . ? 1_555 ? 15 AC1 18 HOH X . ? HOH A 475 . ? 1_555 ? 16 AC1 18 HOH X . ? HOH A 495 . ? 1_555 ? 17 AC1 18 DA C 9 ? DA P 9 . ? 1_555 ? 18 AC1 18 TTD B 5 ? TTD T 5 . ? 1_555 ? 19 AC2 4 HIS A 243 ? HIS A 240 . ? 1_555 ? 20 AC2 4 GLY A 244 ? GLY A 241 . ? 1_555 ? 21 AC2 4 PRO A 247 ? PRO A 244 . ? 1_555 ? 22 AC2 4 EDO T . ? EDO A 449 . ? 1_555 ? 23 AC3 3 THR A 285 ? THR A 282 . ? 1_555 ? 24 AC3 3 SER A 287 ? SER A 284 . ? 1_555 ? 25 AC3 3 HOH X . ? HOH A 460 . ? 1_555 ? 26 AC4 2 THR A 356 ? THR A 353 . ? 1_555 ? 27 AC4 2 ASN A 360 ? ASN A 357 . ? 1_555 ? 28 AC5 8 LEU A 14 ? LEU A 11 . ? 1_555 ? 29 AC5 8 GLU A 119 ? GLU A 116 . ? 1_555 ? 30 AC5 8 LYS A 227 ? LYS A 224 . ? 1_555 ? 31 AC5 8 CYS A 230 ? CYS A 227 . ? 1_555 ? 32 AC5 8 GLY A 231 ? GLY A 228 . ? 1_555 ? 33 AC5 8 LYS A 234 ? LYS A 231 . ? 1_555 ? 34 AC5 8 HOH X . ? HOH A 495 . ? 1_555 ? 35 AC5 8 DA C 9 ? DA P 9 . ? 1_555 ? 36 AC6 5 SER A 260 ? SER A 257 . ? 1_555 ? 37 AC6 5 LEU A 265 ? LEU A 262 . ? 1_555 ? 38 AC6 5 LYS A 296 ? LYS A 293 . ? 1_555 ? 39 AC6 5 ASN A 297 ? ASN A 294 . ? 1_555 ? 40 AC6 5 TRP A 300 ? TRP A 297 . ? 1_555 ? 41 AC7 5 ASP A 184 ? ASP A 181 . ? 4_445 ? 42 AC7 5 ASN A 185 ? ASN A 182 . ? 4_445 ? 43 AC7 5 LEU A 186 ? LEU A 183 . ? 4_445 ? 44 AC7 5 GLN A 283 ? GLN A 280 . ? 1_555 ? 45 AC7 5 GLN A 288 ? GLN A 285 . ? 1_555 ? 46 AC8 3 VAL A 375 ? VAL A 372 . ? 1_555 ? 47 AC8 3 ASP A 378 ? ASP A 375 . ? 1_555 ? 48 AC8 3 ARG A 380 ? ARG A 377 . ? 1_555 ? 49 AC9 2 ASP A 143 ? ASP A 140 . ? 1_555 ? 50 AC9 2 LYS A 171 ? LYS A 168 . ? 1_555 ? 51 BC1 6 SER A 268 ? SER A 265 . ? 1_555 ? 52 BC1 6 HIS A 292 ? HIS A 289 . ? 1_555 ? 53 BC1 6 PHE A 293 ? PHE A 290 . ? 1_555 ? 54 BC1 6 GLN A 346 ? GLN A 343 . ? 3_544 ? 55 BC1 6 GLN A 349 ? GLN A 346 . ? 3_544 ? 56 BC1 6 EDO R . ? EDO A 447 . ? 1_555 ? 57 BC2 5 GLN A 290 ? GLN A 287 . ? 1_555 ? 58 BC2 5 GLY A 294 ? GLY A 291 . ? 1_555 ? 59 BC2 5 GLU A 295 ? GLU A 292 . ? 1_555 ? 60 BC2 5 GLU A 338 ? GLU A 335 . ? 3_544 ? 61 BC2 5 TRP A 342 ? TRP A 339 . ? 3_544 ? 62 BC3 6 GLU A 151 ? GLU A 148 . ? 1_555 ? 63 BC3 6 GLY A 152 ? GLY A 149 . ? 1_555 ? 64 BC3 6 TRP A 177 ? TRP A 174 . ? 1_555 ? 65 BC3 6 SER A 242 ? SER A 239 . ? 1_555 ? 66 BC3 6 SER A 245 ? SER A 242 . ? 1_555 ? 67 BC3 6 EDO P . ? EDO A 445 . ? 1_555 ? 68 BC4 3 GLN A 155 ? GLN A 152 . ? 1_555 ? 69 BC4 3 SER A 180 ? SER A 177 . ? 1_555 ? 70 BC4 3 DTT O . ? DTT A 444 . ? 1_555 ? 71 BC5 5 LYS A 227 ? LYS A 224 . ? 1_555 ? 72 BC5 5 ARG A 256 ? ARG A 253 . ? 1_555 ? 73 BC5 5 ARG A 259 ? ARG A 256 . ? 1_555 ? 74 BC5 5 DT C 8 ? DT P 8 . ? 1_555 ? 75 BC5 5 DA C 9 ? DA P 9 . ? 1_555 ? 76 BC6 1 GOL M . ? GOL A 442 . ? 1_555 ? 77 BC7 2 ARG A 256 ? ARG A 253 . ? 1_555 ? 78 BC7 2 GLY A 263 ? GLY A 260 . ? 1_555 ? 79 BC8 3 HIS A 243 ? HIS A 240 . ? 1_555 ? 80 BC8 3 ARG A 306 ? ARG A 303 . ? 1_555 ? 81 BC8 3 GOL E . ? GOL A 434 . ? 1_555 ? 82 BC9 5 ASP A 16 ? ASP A 13 . ? 1_555 ? 83 BC9 5 MET A 17 ? MET A 14 . ? 1_555 ? 84 BC9 5 ASP A 118 ? ASP A 115 . ? 1_555 ? 85 BC9 5 DZ4 D . ? DZ4 A 433 . ? 1_555 ? 86 BC9 5 MG V . ? MG A 451 . ? 1_555 ? 87 CC1 7 ASP A 16 ? ASP A 13 . ? 1_555 ? 88 CC1 7 ASP A 118 ? ASP A 115 . ? 1_555 ? 89 CC1 7 GLU A 119 ? GLU A 116 . ? 1_555 ? 90 CC1 7 DZ4 D . ? DZ4 A 433 . ? 1_555 ? 91 CC1 7 MG U . ? MG A 450 . ? 1_555 ? 92 CC1 7 HOH X . ? HOH A 495 . ? 1_555 ? 93 CC1 7 DA C 9 ? DA P 9 . ? 1_555 ? 94 CC2 4 ASP A 184 ? ASP A 181 . ? 2_554 ? 95 CC2 4 HIS A 292 ? HIS A 289 . ? 3_554 ? 96 CC2 4 HIS A 396 ? HIS A 393 . ? 1_555 ? 97 CC2 4 HIS A 400 ? HIS A 397 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 16 ? ? 25.59 61.76 2 1 LEU A 75 ? ? -38.55 123.96 3 1 SER A 217 ? ? -158.37 -156.94 4 1 ARG A 253 ? ? -68.85 0.32 5 1 SER A 257 ? ? 80.98 -2.50 6 1 GLN A 314 ? ? -137.23 -32.75 7 1 GLN A 412 ? ? 84.58 -6.17 8 1 THR A 413 ? ? -140.30 -20.68 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id TTD _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id T _pdbx_struct_mod_residue.auth_comp_id TTD _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DT _pdbx_struct_mod_residue.details 'CIS-SYN CYCLOBUTANE THYMINE DIMER' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A PRO 154 ? A PRO 157 3 1 Y 1 A THR 155 ? A THR 158 4 1 Y 1 A THR 156 ? A THR 159 5 1 Y 1 A ALA 157 ? A ALA 160 6 1 Y 1 A GLU 158 ? A GLU 161 7 1 Y 1 A GLU 159 ? A GLU 162 8 1 Y 1 A THR 160 ? A THR 163 9 1 Y 1 A THR 408 ? A THR 411 10 1 Y 1 A SER 409 ? A SER 412 11 1 Y 1 A GLY 410 ? A GLY 413 12 1 Y 1 A ALA 431 ? A ALA 434 13 1 Y 1 A SER 432 ? A SER 435 14 1 Y 1 T DT 1 ? B DT 1 15 1 Y 1 T DA 2 ? B DA 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3D1 "O5'" O N N 1 3D1 "C5'" C N N 2 3D1 "C4'" C N R 3 3D1 "O4'" O N N 4 3D1 "C1'" C N R 5 3D1 N9 N Y N 6 3D1 C4 C Y N 7 3D1 N3 N Y N 8 3D1 C2 C Y N 9 3D1 N1 N Y N 10 3D1 C6 C Y N 11 3D1 N6 N N N 12 3D1 C5 C Y N 13 3D1 N7 N Y N 14 3D1 C8 C Y N 15 3D1 "C2'" C N N 16 3D1 "C3'" C N S 17 3D1 "O3'" O N N 18 3D1 "H5'" H N N 19 3D1 "H5'1" H N N 20 3D1 "H5'2" H N N 21 3D1 "H4'" H N N 22 3D1 "H1'" H N N 23 3D1 H2 H N N 24 3D1 HN61 H N N 25 3D1 HN62 H N N 26 3D1 H8 H N N 27 3D1 "H2'1" H N N 28 3D1 "H2'2" H N N 29 3D1 "H3'" H N N 30 3D1 H1 H N N 31 ALA N N N N 32 ALA CA C N S 33 ALA C C N N 34 ALA O O N N 35 ALA CB C N N 36 ALA OXT O N N 37 ALA H H N N 38 ALA H2 H N N 39 ALA HA H N N 40 ALA HB1 H N N 41 ALA HB2 H N N 42 ALA HB3 H N N 43 ALA HXT H N N 44 ARG N N N N 45 ARG CA C N S 46 ARG C C N N 47 ARG O O N N 48 ARG CB C N N 49 ARG CG C N N 50 ARG CD C N N 51 ARG NE N N N 52 ARG CZ C N N 53 ARG NH1 N N N 54 ARG NH2 N N N 55 ARG OXT O N N 56 ARG H H N N 57 ARG H2 H N N 58 ARG HA H N N 59 ARG HB2 H N N 60 ARG HB3 H N N 61 ARG HG2 H N N 62 ARG HG3 H N N 63 ARG HD2 H N N 64 ARG HD3 H N N 65 ARG HE H N N 66 ARG HH11 H N N 67 ARG HH12 H N N 68 ARG HH21 H N N 69 ARG HH22 H N N 70 ARG HXT H N N 71 ASN N N N N 72 ASN CA C N S 73 ASN C C N N 74 ASN O O N N 75 ASN CB C N N 76 ASN CG C N N 77 ASN OD1 O N N 78 ASN ND2 N N N 79 ASN OXT O N N 80 ASN H H N N 81 ASN H2 H N N 82 ASN HA H N N 83 ASN HB2 H N N 84 ASN HB3 H N N 85 ASN HD21 H N N 86 ASN HD22 H N N 87 ASN HXT H N N 88 ASP N N N N 89 ASP CA C N S 90 ASP C C N N 91 ASP O O N N 92 ASP CB C N N 93 ASP CG C N N 94 ASP OD1 O N N 95 ASP OD2 O N N 96 ASP OXT O N N 97 ASP H H N N 98 ASP H2 H N N 99 ASP HA H N N 100 ASP HB2 H N N 101 ASP HB3 H N N 102 ASP HD2 H N N 103 ASP HXT H N N 104 CO CO CO N N 105 CYS N N N N 106 CYS CA C N R 107 CYS C C N N 108 CYS O O N N 109 CYS CB C N N 110 CYS SG S N N 111 CYS OXT O N N 112 CYS H H N N 113 CYS H2 H N N 114 CYS HA H N N 115 CYS HB2 H N N 116 CYS HB3 H N N 117 CYS HG H N N 118 CYS HXT H N N 119 DA OP3 O N N 120 DA P P N N 121 DA OP1 O N N 122 DA OP2 O N N 123 DA "O5'" O N N 124 DA "C5'" C N N 125 DA "C4'" C N R 126 DA "O4'" O N N 127 DA "C3'" C N S 128 DA "O3'" O N N 129 DA "C2'" C N N 130 DA "C1'" C N R 131 DA N9 N Y N 132 DA C8 C Y N 133 DA N7 N Y N 134 DA C5 C Y N 135 DA C6 C Y N 136 DA N6 N N N 137 DA N1 N Y N 138 DA C2 C Y N 139 DA N3 N Y N 140 DA C4 C Y N 141 DA HOP3 H N N 142 DA HOP2 H N N 143 DA "H5'" H N N 144 DA "H5''" H N N 145 DA "H4'" H N N 146 DA "H3'" H N N 147 DA "HO3'" H N N 148 DA "H2'" H N N 149 DA "H2''" H N N 150 DA "H1'" H N N 151 DA H8 H N N 152 DA H61 H N N 153 DA H62 H N N 154 DA H2 H N N 155 DC OP3 O N N 156 DC P P N N 157 DC OP1 O N N 158 DC OP2 O N N 159 DC "O5'" O N N 160 DC "C5'" C N N 161 DC "C4'" C N R 162 DC "O4'" O N N 163 DC "C3'" C N S 164 DC "O3'" O N N 165 DC "C2'" C N N 166 DC "C1'" C N R 167 DC N1 N N N 168 DC C2 C N N 169 DC O2 O N N 170 DC N3 N N N 171 DC C4 C N N 172 DC N4 N N N 173 DC C5 C N N 174 DC C6 C N N 175 DC HOP3 H N N 176 DC HOP2 H N N 177 DC "H5'" H N N 178 DC "H5''" H N N 179 DC "H4'" H N N 180 DC "H3'" H N N 181 DC "HO3'" H N N 182 DC "H2'" H N N 183 DC "H2''" H N N 184 DC "H1'" H N N 185 DC H41 H N N 186 DC H42 H N N 187 DC H5 H N N 188 DC H6 H N N 189 DG OP3 O N N 190 DG P P N N 191 DG OP1 O N N 192 DG OP2 O N N 193 DG "O5'" O N N 194 DG "C5'" C N N 195 DG "C4'" C N R 196 DG "O4'" O N N 197 DG "C3'" C N S 198 DG "O3'" O N N 199 DG "C2'" C N N 200 DG "C1'" C N R 201 DG N9 N Y N 202 DG C8 C Y N 203 DG N7 N Y N 204 DG C5 C Y N 205 DG C6 C N N 206 DG O6 O N N 207 DG N1 N N N 208 DG C2 C N N 209 DG N2 N N N 210 DG N3 N N N 211 DG C4 C Y N 212 DG HOP3 H N N 213 DG HOP2 H N N 214 DG "H5'" H N N 215 DG "H5''" H N N 216 DG "H4'" H N N 217 DG "H3'" H N N 218 DG "HO3'" H N N 219 DG "H2'" H N N 220 DG "H2''" H N N 221 DG "H1'" H N N 222 DG H8 H N N 223 DG H1 H N N 224 DG H21 H N N 225 DG H22 H N N 226 DT OP3 O N N 227 DT P P N N 228 DT OP1 O N N 229 DT OP2 O N N 230 DT "O5'" O N N 231 DT "C5'" C N N 232 DT "C4'" C N R 233 DT "O4'" O N N 234 DT "C3'" C N S 235 DT "O3'" O N N 236 DT "C2'" C N N 237 DT "C1'" C N R 238 DT N1 N N N 239 DT C2 C N N 240 DT O2 O N N 241 DT N3 N N N 242 DT C4 C N N 243 DT O4 O N N 244 DT C5 C N N 245 DT C7 C N N 246 DT C6 C N N 247 DT HOP3 H N N 248 DT HOP2 H N N 249 DT "H5'" H N N 250 DT "H5''" H N N 251 DT "H4'" H N N 252 DT "H3'" H N N 253 DT "HO3'" H N N 254 DT "H2'" H N N 255 DT "H2''" H N N 256 DT "H1'" H N N 257 DT H3 H N N 258 DT H71 H N N 259 DT H72 H N N 260 DT H73 H N N 261 DT H6 H N N 262 DTT S1 S N N 263 DTT C1 C N N 264 DTT C2 C N R 265 DTT O2 O N N 266 DTT C3 C N R 267 DTT O3 O N N 268 DTT C4 C N N 269 DTT S4 S N N 270 DTT HS1 H N N 271 DTT H11 H N N 272 DTT H12 H N N 273 DTT H2 H N N 274 DTT HO2 H N N 275 DTT H3 H N N 276 DTT HO3 H N N 277 DTT H41 H N N 278 DTT H42 H N N 279 DTT HS2 H N N 280 DZ4 N1 N Y N 281 DZ4 C2 C Y N 282 DZ4 N3 N Y N 283 DZ4 C4 C Y N 284 DZ4 C5 C Y N 285 DZ4 C6 C Y N 286 DZ4 N6 N N N 287 DZ4 N7 N Y N 288 DZ4 C8 C Y N 289 DZ4 N9 N Y N 290 DZ4 PA P N N 291 DZ4 PB P N N 292 DZ4 PG P N N 293 DZ4 "C1'" C N R 294 DZ4 O1A O N N 295 DZ4 O1B O N N 296 DZ4 O1G O N N 297 DZ4 "C2'" C N N 298 DZ4 O2A O N N 299 DZ4 O2B O N N 300 DZ4 O2G O N N 301 DZ4 "C3'" C N S 302 DZ4 "O3'" O N N 303 DZ4 N3A N N N 304 DZ4 O3B O N N 305 DZ4 O3G O N N 306 DZ4 "C4'" C N R 307 DZ4 "O4'" O N N 308 DZ4 "C5'" C N N 309 DZ4 "O5'" O N N 310 DZ4 H2 H N N 311 DZ4 HN6 H N N 312 DZ4 HN6A H N N 313 DZ4 H8 H N N 314 DZ4 "H1'" H N N 315 DZ4 "H2'" H N N 316 DZ4 "H2'A" H N N 317 DZ4 HO2A H N N 318 DZ4 HO2B H N N 319 DZ4 HO2G H N N 320 DZ4 "H3'" H N N 321 DZ4 "HO3'" H N N 322 DZ4 HN3A H N N 323 DZ4 HO3G H N N 324 DZ4 "H4'" H N N 325 DZ4 "H5'" H N N 326 DZ4 "H5'A" H N N 327 EDO C1 C N N 328 EDO O1 O N N 329 EDO C2 C N N 330 EDO O2 O N N 331 EDO H11 H N N 332 EDO H12 H N N 333 EDO HO1 H N N 334 EDO H21 H N N 335 EDO H22 H N N 336 EDO HO2 H N N 337 GLN N N N N 338 GLN CA C N S 339 GLN C C N N 340 GLN O O N N 341 GLN CB C N N 342 GLN CG C N N 343 GLN CD C N N 344 GLN OE1 O N N 345 GLN NE2 N N N 346 GLN OXT O N N 347 GLN H H N N 348 GLN H2 H N N 349 GLN HA H N N 350 GLN HB2 H N N 351 GLN HB3 H N N 352 GLN HG2 H N N 353 GLN HG3 H N N 354 GLN HE21 H N N 355 GLN HE22 H N N 356 GLN HXT H N N 357 GLU N N N N 358 GLU CA C N S 359 GLU C C N N 360 GLU O O N N 361 GLU CB C N N 362 GLU CG C N N 363 GLU CD C N N 364 GLU OE1 O N N 365 GLU OE2 O N N 366 GLU OXT O N N 367 GLU H H N N 368 GLU H2 H N N 369 GLU HA H N N 370 GLU HB2 H N N 371 GLU HB3 H N N 372 GLU HG2 H N N 373 GLU HG3 H N N 374 GLU HE2 H N N 375 GLU HXT H N N 376 GLY N N N N 377 GLY CA C N N 378 GLY C C N N 379 GLY O O N N 380 GLY OXT O N N 381 GLY H H N N 382 GLY H2 H N N 383 GLY HA2 H N N 384 GLY HA3 H N N 385 GLY HXT H N N 386 GOL C1 C N N 387 GOL O1 O N N 388 GOL C2 C N N 389 GOL O2 O N N 390 GOL C3 C N N 391 GOL O3 O N N 392 GOL H11 H N N 393 GOL H12 H N N 394 GOL HO1 H N N 395 GOL H2 H N N 396 GOL HO2 H N N 397 GOL H31 H N N 398 GOL H32 H N N 399 GOL HO3 H N N 400 HIS N N N N 401 HIS CA C N S 402 HIS C C N N 403 HIS O O N N 404 HIS CB C N N 405 HIS CG C Y N 406 HIS ND1 N Y N 407 HIS CD2 C Y N 408 HIS CE1 C Y N 409 HIS NE2 N Y N 410 HIS OXT O N N 411 HIS H H N N 412 HIS H2 H N N 413 HIS HA H N N 414 HIS HB2 H N N 415 HIS HB3 H N N 416 HIS HD1 H N N 417 HIS HD2 H N N 418 HIS HE1 H N N 419 HIS HE2 H N N 420 HIS HXT H N N 421 HOH O O N N 422 HOH H1 H N N 423 HOH H2 H N N 424 ILE N N N N 425 ILE CA C N S 426 ILE C C N N 427 ILE O O N N 428 ILE CB C N S 429 ILE CG1 C N N 430 ILE CG2 C N N 431 ILE CD1 C N N 432 ILE OXT O N N 433 ILE H H N N 434 ILE H2 H N N 435 ILE HA H N N 436 ILE HB H N N 437 ILE HG12 H N N 438 ILE HG13 H N N 439 ILE HG21 H N N 440 ILE HG22 H N N 441 ILE HG23 H N N 442 ILE HD11 H N N 443 ILE HD12 H N N 444 ILE HD13 H N N 445 ILE HXT H N N 446 LEU N N N N 447 LEU CA C N S 448 LEU C C N N 449 LEU O O N N 450 LEU CB C N N 451 LEU CG C N N 452 LEU CD1 C N N 453 LEU CD2 C N N 454 LEU OXT O N N 455 LEU H H N N 456 LEU H2 H N N 457 LEU HA H N N 458 LEU HB2 H N N 459 LEU HB3 H N N 460 LEU HG H N N 461 LEU HD11 H N N 462 LEU HD12 H N N 463 LEU HD13 H N N 464 LEU HD21 H N N 465 LEU HD22 H N N 466 LEU HD23 H N N 467 LEU HXT H N N 468 LYS N N N N 469 LYS CA C N S 470 LYS C C N N 471 LYS O O N N 472 LYS CB C N N 473 LYS CG C N N 474 LYS CD C N N 475 LYS CE C N N 476 LYS NZ N N N 477 LYS OXT O N N 478 LYS H H N N 479 LYS H2 H N N 480 LYS HA H N N 481 LYS HB2 H N N 482 LYS HB3 H N N 483 LYS HG2 H N N 484 LYS HG3 H N N 485 LYS HD2 H N N 486 LYS HD3 H N N 487 LYS HE2 H N N 488 LYS HE3 H N N 489 LYS HZ1 H N N 490 LYS HZ2 H N N 491 LYS HZ3 H N N 492 LYS HXT H N N 493 MET N N N N 494 MET CA C N S 495 MET C C N N 496 MET O O N N 497 MET CB C N N 498 MET CG C N N 499 MET SD S N N 500 MET CE C N N 501 MET OXT O N N 502 MET H H N N 503 MET H2 H N N 504 MET HA H N N 505 MET HB2 H N N 506 MET HB3 H N N 507 MET HG2 H N N 508 MET HG3 H N N 509 MET HE1 H N N 510 MET HE2 H N N 511 MET HE3 H N N 512 MET HXT H N N 513 MG MG MG N N 514 PHE N N N N 515 PHE CA C N S 516 PHE C C N N 517 PHE O O N N 518 PHE CB C N N 519 PHE CG C Y N 520 PHE CD1 C Y N 521 PHE CD2 C Y N 522 PHE CE1 C Y N 523 PHE CE2 C Y N 524 PHE CZ C Y N 525 PHE OXT O N N 526 PHE H H N N 527 PHE H2 H N N 528 PHE HA H N N 529 PHE HB2 H N N 530 PHE HB3 H N N 531 PHE HD1 H N N 532 PHE HD2 H N N 533 PHE HE1 H N N 534 PHE HE2 H N N 535 PHE HZ H N N 536 PHE HXT H N N 537 PRO N N N N 538 PRO CA C N S 539 PRO C C N N 540 PRO O O N N 541 PRO CB C N N 542 PRO CG C N N 543 PRO CD C N N 544 PRO OXT O N N 545 PRO H H N N 546 PRO HA H N N 547 PRO HB2 H N N 548 PRO HB3 H N N 549 PRO HG2 H N N 550 PRO HG3 H N N 551 PRO HD2 H N N 552 PRO HD3 H N N 553 PRO HXT H N N 554 SER N N N N 555 SER CA C N S 556 SER C C N N 557 SER O O N N 558 SER CB C N N 559 SER OG O N N 560 SER OXT O N N 561 SER H H N N 562 SER H2 H N N 563 SER HA H N N 564 SER HB2 H N N 565 SER HB3 H N N 566 SER HG H N N 567 SER HXT H N N 568 THR N N N N 569 THR CA C N S 570 THR C C N N 571 THR O O N N 572 THR CB C N R 573 THR OG1 O N N 574 THR CG2 C N N 575 THR OXT O N N 576 THR H H N N 577 THR H2 H N N 578 THR HA H N N 579 THR HB H N N 580 THR HG1 H N N 581 THR HG21 H N N 582 THR HG22 H N N 583 THR HG23 H N N 584 THR HXT H N N 585 TRP N N N N 586 TRP CA C N S 587 TRP C C N N 588 TRP O O N N 589 TRP CB C N N 590 TRP CG C Y N 591 TRP CD1 C Y N 592 TRP CD2 C Y N 593 TRP NE1 N Y N 594 TRP CE2 C Y N 595 TRP CE3 C Y N 596 TRP CZ2 C Y N 597 TRP CZ3 C Y N 598 TRP CH2 C Y N 599 TRP OXT O N N 600 TRP H H N N 601 TRP H2 H N N 602 TRP HA H N N 603 TRP HB2 H N N 604 TRP HB3 H N N 605 TRP HD1 H N N 606 TRP HE1 H N N 607 TRP HE3 H N N 608 TRP HZ2 H N N 609 TRP HZ3 H N N 610 TRP HH2 H N N 611 TRP HXT H N N 612 TTD P P N N 613 TTD OP1 O N N 614 TTD OP2 O N N 615 TTD OP3 O N N 616 TTD "O5'" O N N 617 TTD "C5'" C N N 618 TTD C4R C N R 619 TTD "O4'" O N N 620 TTD C3R C N S 621 TTD O3R O N N 622 TTD "C2'" C N N 623 TTD "C1'" C N R 624 TTD N1 N N N 625 TTD C2 C N N 626 TTD O2 O N N 627 TTD N3 N N N 628 TTD C4 C N N 629 TTD O4 O N N 630 TTD C5 C N R 631 TTD C5A C N N 632 TTD C6 C N R 633 TTD PB P N S 634 TTD O5P O N N 635 TTD O4P O N N 636 TTD O5R O N N 637 TTD C5R C N N 638 TTD O4R O N N 639 TTD C2R C N N 640 TTD C1R C N R 641 TTD N1T N N N 642 TTD C2T C N N 643 TTD O2T O N N 644 TTD N3T N N N 645 TTD C4T C N N 646 TTD O4T O N N 647 TTD C5T C N S 648 TTD C5M C N N 649 TTD C6T C N S 650 TTD "C4'" C N R 651 TTD "C3'" C N S 652 TTD "O3'" O N N 653 TTD HOP2 H N N 654 TTD HOP3 H N N 655 TTD "H5'" H N N 656 TTD "H5''" H N N 657 TTD H4R H N N 658 TTD H3R H N N 659 TTD "H2'" H N N 660 TTD "H2''" H N N 661 TTD "H1'" H N N 662 TTD HN3 H N N 663 TTD H5A1 H N N 664 TTD H5A2 H N N 665 TTD H5A3 H N N 666 TTD H6 H N N 667 TTD H4P H N N 668 TTD H5R1 H N N 669 TTD H5R2 H N N 670 TTD H2R1 H N N 671 TTD H2R2 H N N 672 TTD H1R H N N 673 TTD HT H N N 674 TTD H71 H N N 675 TTD H72 H N N 676 TTD H73 H N N 677 TTD H6T H N N 678 TTD "H4'" H N N 679 TTD H1 H N N 680 TTD "HO3'" H N N 681 TYR N N N N 682 TYR CA C N S 683 TYR C C N N 684 TYR O O N N 685 TYR CB C N N 686 TYR CG C Y N 687 TYR CD1 C Y N 688 TYR CD2 C Y N 689 TYR CE1 C Y N 690 TYR CE2 C Y N 691 TYR CZ C Y N 692 TYR OH O N N 693 TYR OXT O N N 694 TYR H H N N 695 TYR H2 H N N 696 TYR HA H N N 697 TYR HB2 H N N 698 TYR HB3 H N N 699 TYR HD1 H N N 700 TYR HD2 H N N 701 TYR HE1 H N N 702 TYR HE2 H N N 703 TYR HH H N N 704 TYR HXT H N N 705 VAL N N N N 706 VAL CA C N S 707 VAL C C N N 708 VAL O O N N 709 VAL CB C N N 710 VAL CG1 C N N 711 VAL CG2 C N N 712 VAL OXT O N N 713 VAL H H N N 714 VAL H2 H N N 715 VAL HA H N N 716 VAL HB H N N 717 VAL HG11 H N N 718 VAL HG12 H N N 719 VAL HG13 H N N 720 VAL HG21 H N N 721 VAL HG22 H N N 722 VAL HG23 H N N 723 VAL HXT H N N 724 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3D1 "O5'" "C5'" sing N N 1 3D1 "O5'" "H5'" sing N N 2 3D1 "C5'" "C4'" sing N N 3 3D1 "C5'" "H5'1" sing N N 4 3D1 "C5'" "H5'2" sing N N 5 3D1 "C4'" "O4'" sing N N 6 3D1 "C4'" "C3'" sing N N 7 3D1 "C4'" "H4'" sing N N 8 3D1 "O4'" "C1'" sing N N 9 3D1 "C1'" N9 sing N N 10 3D1 "C1'" "C2'" sing N N 11 3D1 "C1'" "H1'" sing N N 12 3D1 N9 C4 sing Y N 13 3D1 N9 C8 sing Y N 14 3D1 C4 N3 doub Y N 15 3D1 C4 C5 sing Y N 16 3D1 N3 C2 sing Y N 17 3D1 C2 N1 doub Y N 18 3D1 C2 H2 sing N N 19 3D1 N1 C6 sing Y N 20 3D1 C6 N6 sing N N 21 3D1 C6 C5 doub Y N 22 3D1 N6 HN61 sing N N 23 3D1 N6 HN62 sing N N 24 3D1 C5 N7 sing Y N 25 3D1 N7 C8 doub Y N 26 3D1 C8 H8 sing N N 27 3D1 "C2'" "C3'" sing N N 28 3D1 "C2'" "H2'1" sing N N 29 3D1 "C2'" "H2'2" sing N N 30 3D1 "C3'" "O3'" sing N N 31 3D1 "C3'" "H3'" sing N N 32 3D1 "O3'" H1 sing N N 33 ALA N CA sing N N 34 ALA N H sing N N 35 ALA N H2 sing N N 36 ALA CA C sing N N 37 ALA CA CB sing N N 38 ALA CA HA sing N N 39 ALA C O doub N N 40 ALA C OXT sing N N 41 ALA CB HB1 sing N N 42 ALA CB HB2 sing N N 43 ALA CB HB3 sing N N 44 ALA OXT HXT sing N N 45 ARG N CA sing N N 46 ARG N H sing N N 47 ARG N H2 sing N N 48 ARG CA C sing N N 49 ARG CA CB sing N N 50 ARG CA HA sing N N 51 ARG C O doub N N 52 ARG C OXT sing N N 53 ARG CB CG sing N N 54 ARG CB HB2 sing N N 55 ARG CB HB3 sing N N 56 ARG CG CD sing N N 57 ARG CG HG2 sing N N 58 ARG CG HG3 sing N N 59 ARG CD NE sing N N 60 ARG CD HD2 sing N N 61 ARG CD HD3 sing N N 62 ARG NE CZ sing N N 63 ARG NE HE sing N N 64 ARG CZ NH1 sing N N 65 ARG CZ NH2 doub N N 66 ARG NH1 HH11 sing N N 67 ARG NH1 HH12 sing N N 68 ARG NH2 HH21 sing N N 69 ARG NH2 HH22 sing N N 70 ARG OXT HXT sing N N 71 ASN N CA sing N N 72 ASN N H sing N N 73 ASN N H2 sing N N 74 ASN CA C sing N N 75 ASN CA CB sing N N 76 ASN CA HA sing N N 77 ASN C O doub N N 78 ASN C OXT sing N N 79 ASN CB CG sing N N 80 ASN CB HB2 sing N N 81 ASN CB HB3 sing N N 82 ASN CG OD1 doub N N 83 ASN CG ND2 sing N N 84 ASN ND2 HD21 sing N N 85 ASN ND2 HD22 sing N N 86 ASN OXT HXT sing N N 87 ASP N CA sing N N 88 ASP N H sing N N 89 ASP N H2 sing N N 90 ASP CA C sing N N 91 ASP CA CB sing N N 92 ASP CA HA sing N N 93 ASP C O doub N N 94 ASP C OXT sing N N 95 ASP CB CG sing N N 96 ASP CB HB2 sing N N 97 ASP CB HB3 sing N N 98 ASP CG OD1 doub N N 99 ASP CG OD2 sing N N 100 ASP OD2 HD2 sing N N 101 ASP OXT HXT sing N N 102 CYS N CA sing N N 103 CYS N H sing N N 104 CYS N H2 sing N N 105 CYS CA C sing N N 106 CYS CA CB sing N N 107 CYS CA HA sing N N 108 CYS C O doub N N 109 CYS C OXT sing N N 110 CYS CB SG sing N N 111 CYS CB HB2 sing N N 112 CYS CB HB3 sing N N 113 CYS SG HG sing N N 114 CYS OXT HXT sing N N 115 DA OP3 P sing N N 116 DA OP3 HOP3 sing N N 117 DA P OP1 doub N N 118 DA P OP2 sing N N 119 DA P "O5'" sing N N 120 DA OP2 HOP2 sing N N 121 DA "O5'" "C5'" sing N N 122 DA "C5'" "C4'" sing N N 123 DA "C5'" "H5'" sing N N 124 DA "C5'" "H5''" sing N N 125 DA "C4'" "O4'" sing N N 126 DA "C4'" "C3'" sing N N 127 DA "C4'" "H4'" sing N N 128 DA "O4'" "C1'" sing N N 129 DA "C3'" "O3'" sing N N 130 DA "C3'" "C2'" sing N N 131 DA "C3'" "H3'" sing N N 132 DA "O3'" "HO3'" sing N N 133 DA "C2'" "C1'" sing N N 134 DA "C2'" "H2'" sing N N 135 DA "C2'" "H2''" sing N N 136 DA "C1'" N9 sing N N 137 DA "C1'" "H1'" sing N N 138 DA N9 C8 sing Y N 139 DA N9 C4 sing Y N 140 DA C8 N7 doub Y N 141 DA C8 H8 sing N N 142 DA N7 C5 sing Y N 143 DA C5 C6 sing Y N 144 DA C5 C4 doub Y N 145 DA C6 N6 sing N N 146 DA C6 N1 doub Y N 147 DA N6 H61 sing N N 148 DA N6 H62 sing N N 149 DA N1 C2 sing Y N 150 DA C2 N3 doub Y N 151 DA C2 H2 sing N N 152 DA N3 C4 sing Y N 153 DC OP3 P sing N N 154 DC OP3 HOP3 sing N N 155 DC P OP1 doub N N 156 DC P OP2 sing N N 157 DC P "O5'" sing N N 158 DC OP2 HOP2 sing N N 159 DC "O5'" "C5'" sing N N 160 DC "C5'" "C4'" sing N N 161 DC "C5'" "H5'" sing N N 162 DC "C5'" "H5''" sing N N 163 DC "C4'" "O4'" sing N N 164 DC "C4'" "C3'" sing N N 165 DC "C4'" "H4'" sing N N 166 DC "O4'" "C1'" sing N N 167 DC "C3'" "O3'" sing N N 168 DC "C3'" "C2'" sing N N 169 DC "C3'" "H3'" sing N N 170 DC "O3'" "HO3'" sing N N 171 DC "C2'" "C1'" sing N N 172 DC "C2'" "H2'" sing N N 173 DC "C2'" "H2''" sing N N 174 DC "C1'" N1 sing N N 175 DC "C1'" "H1'" sing N N 176 DC N1 C2 sing N N 177 DC N1 C6 sing N N 178 DC C2 O2 doub N N 179 DC C2 N3 sing N N 180 DC N3 C4 doub N N 181 DC C4 N4 sing N N 182 DC C4 C5 sing N N 183 DC N4 H41 sing N N 184 DC N4 H42 sing N N 185 DC C5 C6 doub N N 186 DC C5 H5 sing N N 187 DC C6 H6 sing N N 188 DG OP3 P sing N N 189 DG OP3 HOP3 sing N N 190 DG P OP1 doub N N 191 DG P OP2 sing N N 192 DG P "O5'" sing N N 193 DG OP2 HOP2 sing N N 194 DG "O5'" "C5'" sing N N 195 DG "C5'" "C4'" sing N N 196 DG "C5'" "H5'" sing N N 197 DG "C5'" "H5''" sing N N 198 DG "C4'" "O4'" sing N N 199 DG "C4'" "C3'" sing N N 200 DG "C4'" "H4'" sing N N 201 DG "O4'" "C1'" sing N N 202 DG "C3'" "O3'" sing N N 203 DG "C3'" "C2'" sing N N 204 DG "C3'" "H3'" sing N N 205 DG "O3'" "HO3'" sing N N 206 DG "C2'" "C1'" sing N N 207 DG "C2'" "H2'" sing N N 208 DG "C2'" "H2''" sing N N 209 DG "C1'" N9 sing N N 210 DG "C1'" "H1'" sing N N 211 DG N9 C8 sing Y N 212 DG N9 C4 sing Y N 213 DG C8 N7 doub Y N 214 DG C8 H8 sing N N 215 DG N7 C5 sing Y N 216 DG C5 C6 sing N N 217 DG C5 C4 doub Y N 218 DG C6 O6 doub N N 219 DG C6 N1 sing N N 220 DG N1 C2 sing N N 221 DG N1 H1 sing N N 222 DG C2 N2 sing N N 223 DG C2 N3 doub N N 224 DG N2 H21 sing N N 225 DG N2 H22 sing N N 226 DG N3 C4 sing N N 227 DT OP3 P sing N N 228 DT OP3 HOP3 sing N N 229 DT P OP1 doub N N 230 DT P OP2 sing N N 231 DT P "O5'" sing N N 232 DT OP2 HOP2 sing N N 233 DT "O5'" "C5'" sing N N 234 DT "C5'" "C4'" sing N N 235 DT "C5'" "H5'" sing N N 236 DT "C5'" "H5''" sing N N 237 DT "C4'" "O4'" sing N N 238 DT "C4'" "C3'" sing N N 239 DT "C4'" "H4'" sing N N 240 DT "O4'" "C1'" sing N N 241 DT "C3'" "O3'" sing N N 242 DT "C3'" "C2'" sing N N 243 DT "C3'" "H3'" sing N N 244 DT "O3'" "HO3'" sing N N 245 DT "C2'" "C1'" sing N N 246 DT "C2'" "H2'" sing N N 247 DT "C2'" "H2''" sing N N 248 DT "C1'" N1 sing N N 249 DT "C1'" "H1'" sing N N 250 DT N1 C2 sing N N 251 DT N1 C6 sing N N 252 DT C2 O2 doub N N 253 DT C2 N3 sing N N 254 DT N3 C4 sing N N 255 DT N3 H3 sing N N 256 DT C4 O4 doub N N 257 DT C4 C5 sing N N 258 DT C5 C7 sing N N 259 DT C5 C6 doub N N 260 DT C7 H71 sing N N 261 DT C7 H72 sing N N 262 DT C7 H73 sing N N 263 DT C6 H6 sing N N 264 DTT S1 C1 sing N N 265 DTT S1 HS1 sing N N 266 DTT C1 C2 sing N N 267 DTT C1 H11 sing N N 268 DTT C1 H12 sing N N 269 DTT C2 O2 sing N N 270 DTT C2 C3 sing N N 271 DTT C2 H2 sing N N 272 DTT O2 HO2 sing N N 273 DTT C3 O3 sing N N 274 DTT C3 C4 sing N N 275 DTT C3 H3 sing N N 276 DTT O3 HO3 sing N N 277 DTT C4 S4 sing N N 278 DTT C4 H41 sing N N 279 DTT C4 H42 sing N N 280 DTT S4 HS2 sing N N 281 DZ4 C2 N1 doub Y N 282 DZ4 N1 C6 sing Y N 283 DZ4 N3 C2 sing Y N 284 DZ4 C2 H2 sing N N 285 DZ4 N3 C4 doub Y N 286 DZ4 N9 C4 sing Y N 287 DZ4 C4 C5 sing Y N 288 DZ4 C5 N7 sing Y N 289 DZ4 C5 C6 doub Y N 290 DZ4 C6 N6 sing N N 291 DZ4 N6 HN6 sing N N 292 DZ4 N6 HN6A sing N N 293 DZ4 C8 N7 doub Y N 294 DZ4 N9 C8 sing Y N 295 DZ4 C8 H8 sing N N 296 DZ4 "C1'" N9 sing N N 297 DZ4 "O5'" PA sing N N 298 DZ4 O1A PA doub N N 299 DZ4 PA O2A sing N N 300 DZ4 PA N3A sing N N 301 DZ4 O1B PB doub N N 302 DZ4 N3A PB sing N N 303 DZ4 PB O2B sing N N 304 DZ4 PB O3B sing N N 305 DZ4 O1G PG doub N N 306 DZ4 PG O3B sing N N 307 DZ4 PG O2G sing N N 308 DZ4 PG O3G sing N N 309 DZ4 "O4'" "C1'" sing N N 310 DZ4 "C1'" "C2'" sing N N 311 DZ4 "C1'" "H1'" sing N N 312 DZ4 "C3'" "C2'" sing N N 313 DZ4 "C2'" "H2'" sing N N 314 DZ4 "C2'" "H2'A" sing N N 315 DZ4 O2A HO2A sing N N 316 DZ4 O2B HO2B sing N N 317 DZ4 O2G HO2G sing N N 318 DZ4 "C4'" "C3'" sing N N 319 DZ4 "C3'" "O3'" sing N N 320 DZ4 "C3'" "H3'" sing N N 321 DZ4 "O3'" "HO3'" sing N N 322 DZ4 N3A HN3A sing N N 323 DZ4 O3G HO3G sing N N 324 DZ4 "O4'" "C4'" sing N N 325 DZ4 "C4'" "C5'" sing N N 326 DZ4 "C4'" "H4'" sing N N 327 DZ4 "C5'" "O5'" sing N N 328 DZ4 "C5'" "H5'" sing N N 329 DZ4 "C5'" "H5'A" sing N N 330 EDO C1 O1 sing N N 331 EDO C1 C2 sing N N 332 EDO C1 H11 sing N N 333 EDO C1 H12 sing N N 334 EDO O1 HO1 sing N N 335 EDO C2 O2 sing N N 336 EDO C2 H21 sing N N 337 EDO C2 H22 sing N N 338 EDO O2 HO2 sing N N 339 GLN N CA sing N N 340 GLN N H sing N N 341 GLN N H2 sing N N 342 GLN CA C sing N N 343 GLN CA CB sing N N 344 GLN CA HA sing N N 345 GLN C O doub N N 346 GLN C OXT sing N N 347 GLN CB CG sing N N 348 GLN CB HB2 sing N N 349 GLN CB HB3 sing N N 350 GLN CG CD sing N N 351 GLN CG HG2 sing N N 352 GLN CG HG3 sing N N 353 GLN CD OE1 doub N N 354 GLN CD NE2 sing N N 355 GLN NE2 HE21 sing N N 356 GLN NE2 HE22 sing N N 357 GLN OXT HXT sing N N 358 GLU N CA sing N N 359 GLU N H sing N N 360 GLU N H2 sing N N 361 GLU CA C sing N N 362 GLU CA CB sing N N 363 GLU CA HA sing N N 364 GLU C O doub N N 365 GLU C OXT sing N N 366 GLU CB CG sing N N 367 GLU CB HB2 sing N N 368 GLU CB HB3 sing N N 369 GLU CG CD sing N N 370 GLU CG HG2 sing N N 371 GLU CG HG3 sing N N 372 GLU CD OE1 doub N N 373 GLU CD OE2 sing N N 374 GLU OE2 HE2 sing N N 375 GLU OXT HXT sing N N 376 GLY N CA sing N N 377 GLY N H sing N N 378 GLY N H2 sing N N 379 GLY CA C sing N N 380 GLY CA HA2 sing N N 381 GLY CA HA3 sing N N 382 GLY C O doub N N 383 GLY C OXT sing N N 384 GLY OXT HXT sing N N 385 GOL C1 O1 sing N N 386 GOL C1 C2 sing N N 387 GOL C1 H11 sing N N 388 GOL C1 H12 sing N N 389 GOL O1 HO1 sing N N 390 GOL C2 O2 sing N N 391 GOL C2 C3 sing N N 392 GOL C2 H2 sing N N 393 GOL O2 HO2 sing N N 394 GOL C3 O3 sing N N 395 GOL C3 H31 sing N N 396 GOL C3 H32 sing N N 397 GOL O3 HO3 sing N N 398 HIS N CA sing N N 399 HIS N H sing N N 400 HIS N H2 sing N N 401 HIS CA C sing N N 402 HIS CA CB sing N N 403 HIS CA HA sing N N 404 HIS C O doub N N 405 HIS C OXT sing N N 406 HIS CB CG sing N N 407 HIS CB HB2 sing N N 408 HIS CB HB3 sing N N 409 HIS CG ND1 sing Y N 410 HIS CG CD2 doub Y N 411 HIS ND1 CE1 doub Y N 412 HIS ND1 HD1 sing N N 413 HIS CD2 NE2 sing Y N 414 HIS CD2 HD2 sing N N 415 HIS CE1 NE2 sing Y N 416 HIS CE1 HE1 sing N N 417 HIS NE2 HE2 sing N N 418 HIS OXT HXT sing N N 419 HOH O H1 sing N N 420 HOH O H2 sing N N 421 ILE N CA sing N N 422 ILE N H sing N N 423 ILE N H2 sing N N 424 ILE CA C sing N N 425 ILE CA CB sing N N 426 ILE CA HA sing N N 427 ILE C O doub N N 428 ILE C OXT sing N N 429 ILE CB CG1 sing N N 430 ILE CB CG2 sing N N 431 ILE CB HB sing N N 432 ILE CG1 CD1 sing N N 433 ILE CG1 HG12 sing N N 434 ILE CG1 HG13 sing N N 435 ILE CG2 HG21 sing N N 436 ILE CG2 HG22 sing N N 437 ILE CG2 HG23 sing N N 438 ILE CD1 HD11 sing N N 439 ILE CD1 HD12 sing N N 440 ILE CD1 HD13 sing N N 441 ILE OXT HXT sing N N 442 LEU N CA sing N N 443 LEU N H sing N N 444 LEU N H2 sing N N 445 LEU CA C sing N N 446 LEU CA CB sing N N 447 LEU CA HA sing N N 448 LEU C O doub N N 449 LEU C OXT sing N N 450 LEU CB CG sing N N 451 LEU CB HB2 sing N N 452 LEU CB HB3 sing N N 453 LEU CG CD1 sing N N 454 LEU CG CD2 sing N N 455 LEU CG HG sing N N 456 LEU CD1 HD11 sing N N 457 LEU CD1 HD12 sing N N 458 LEU CD1 HD13 sing N N 459 LEU CD2 HD21 sing N N 460 LEU CD2 HD22 sing N N 461 LEU CD2 HD23 sing N N 462 LEU OXT HXT sing N N 463 LYS N CA sing N N 464 LYS N H sing N N 465 LYS N H2 sing N N 466 LYS CA C sing N N 467 LYS CA CB sing N N 468 LYS CA HA sing N N 469 LYS C O doub N N 470 LYS C OXT sing N N 471 LYS CB CG sing N N 472 LYS CB HB2 sing N N 473 LYS CB HB3 sing N N 474 LYS CG CD sing N N 475 LYS CG HG2 sing N N 476 LYS CG HG3 sing N N 477 LYS CD CE sing N N 478 LYS CD HD2 sing N N 479 LYS CD HD3 sing N N 480 LYS CE NZ sing N N 481 LYS CE HE2 sing N N 482 LYS CE HE3 sing N N 483 LYS NZ HZ1 sing N N 484 LYS NZ HZ2 sing N N 485 LYS NZ HZ3 sing N N 486 LYS OXT HXT sing N N 487 MET N CA sing N N 488 MET N H sing N N 489 MET N H2 sing N N 490 MET CA C sing N N 491 MET CA CB sing N N 492 MET CA HA sing N N 493 MET C O doub N N 494 MET C OXT sing N N 495 MET CB CG sing N N 496 MET CB HB2 sing N N 497 MET CB HB3 sing N N 498 MET CG SD sing N N 499 MET CG HG2 sing N N 500 MET CG HG3 sing N N 501 MET SD CE sing N N 502 MET CE HE1 sing N N 503 MET CE HE2 sing N N 504 MET CE HE3 sing N N 505 MET OXT HXT sing N N 506 PHE N CA sing N N 507 PHE N H sing N N 508 PHE N H2 sing N N 509 PHE CA C sing N N 510 PHE CA CB sing N N 511 PHE CA HA sing N N 512 PHE C O doub N N 513 PHE C OXT sing N N 514 PHE CB CG sing N N 515 PHE CB HB2 sing N N 516 PHE CB HB3 sing N N 517 PHE CG CD1 doub Y N 518 PHE CG CD2 sing Y N 519 PHE CD1 CE1 sing Y N 520 PHE CD1 HD1 sing N N 521 PHE CD2 CE2 doub Y N 522 PHE CD2 HD2 sing N N 523 PHE CE1 CZ doub Y N 524 PHE CE1 HE1 sing N N 525 PHE CE2 CZ sing Y N 526 PHE CE2 HE2 sing N N 527 PHE CZ HZ sing N N 528 PHE OXT HXT sing N N 529 PRO N CA sing N N 530 PRO N CD sing N N 531 PRO N H sing N N 532 PRO CA C sing N N 533 PRO CA CB sing N N 534 PRO CA HA sing N N 535 PRO C O doub N N 536 PRO C OXT sing N N 537 PRO CB CG sing N N 538 PRO CB HB2 sing N N 539 PRO CB HB3 sing N N 540 PRO CG CD sing N N 541 PRO CG HG2 sing N N 542 PRO CG HG3 sing N N 543 PRO CD HD2 sing N N 544 PRO CD HD3 sing N N 545 PRO OXT HXT sing N N 546 SER N CA sing N N 547 SER N H sing N N 548 SER N H2 sing N N 549 SER CA C sing N N 550 SER CA CB sing N N 551 SER CA HA sing N N 552 SER C O doub N N 553 SER C OXT sing N N 554 SER CB OG sing N N 555 SER CB HB2 sing N N 556 SER CB HB3 sing N N 557 SER OG HG sing N N 558 SER OXT HXT sing N N 559 THR N CA sing N N 560 THR N H sing N N 561 THR N H2 sing N N 562 THR CA C sing N N 563 THR CA CB sing N N 564 THR CA HA sing N N 565 THR C O doub N N 566 THR C OXT sing N N 567 THR CB OG1 sing N N 568 THR CB CG2 sing N N 569 THR CB HB sing N N 570 THR OG1 HG1 sing N N 571 THR CG2 HG21 sing N N 572 THR CG2 HG22 sing N N 573 THR CG2 HG23 sing N N 574 THR OXT HXT sing N N 575 TRP N CA sing N N 576 TRP N H sing N N 577 TRP N H2 sing N N 578 TRP CA C sing N N 579 TRP CA CB sing N N 580 TRP CA HA sing N N 581 TRP C O doub N N 582 TRP C OXT sing N N 583 TRP CB CG sing N N 584 TRP CB HB2 sing N N 585 TRP CB HB3 sing N N 586 TRP CG CD1 doub Y N 587 TRP CG CD2 sing Y N 588 TRP CD1 NE1 sing Y N 589 TRP CD1 HD1 sing N N 590 TRP CD2 CE2 doub Y N 591 TRP CD2 CE3 sing Y N 592 TRP NE1 CE2 sing Y N 593 TRP NE1 HE1 sing N N 594 TRP CE2 CZ2 sing Y N 595 TRP CE3 CZ3 doub Y N 596 TRP CE3 HE3 sing N N 597 TRP CZ2 CH2 doub Y N 598 TRP CZ2 HZ2 sing N N 599 TRP CZ3 CH2 sing Y N 600 TRP CZ3 HZ3 sing N N 601 TRP CH2 HH2 sing N N 602 TRP OXT HXT sing N N 603 TTD P OP1 doub N N 604 TTD P OP2 sing N N 605 TTD P OP3 sing N N 606 TTD P "O5'" sing N N 607 TTD OP2 HOP2 sing N N 608 TTD OP3 HOP3 sing N N 609 TTD "O5'" "C5'" sing N N 610 TTD "C5'" C4R sing N N 611 TTD "C5'" "H5'" sing N N 612 TTD "C5'" "H5''" sing N N 613 TTD C4R "O4'" sing N N 614 TTD C4R C3R sing N N 615 TTD C4R H4R sing N N 616 TTD "O4'" "C1'" sing N N 617 TTD C3R O3R sing N N 618 TTD C3R "C2'" sing N N 619 TTD C3R H3R sing N N 620 TTD O3R PB sing N N 621 TTD "C2'" "C1'" sing N N 622 TTD "C2'" "H2'" sing N N 623 TTD "C2'" "H2''" sing N N 624 TTD "C1'" N1 sing N N 625 TTD "C1'" "H1'" sing N N 626 TTD N1 C2 sing N N 627 TTD N1 C6 sing N N 628 TTD C2 O2 doub N N 629 TTD C2 N3 sing N N 630 TTD N3 C4 sing N N 631 TTD N3 HN3 sing N N 632 TTD C4 O4 doub N N 633 TTD C4 C5 sing N N 634 TTD C5 C5A sing N N 635 TTD C5 C6 sing N N 636 TTD C5 C5T sing N N 637 TTD C5A H5A1 sing N N 638 TTD C5A H5A2 sing N N 639 TTD C5A H5A3 sing N N 640 TTD C6 C6T sing N N 641 TTD C6 H6 sing N N 642 TTD PB O5P doub N N 643 TTD PB O4P sing N N 644 TTD PB O5R sing N N 645 TTD O4P H4P sing N N 646 TTD O5R C5R sing N N 647 TTD C5R "C4'" sing N N 648 TTD C5R H5R1 sing N N 649 TTD C5R H5R2 sing N N 650 TTD O4R C1R sing N N 651 TTD O4R "C4'" sing N N 652 TTD C2R C1R sing N N 653 TTD C2R "C3'" sing N N 654 TTD C2R H2R1 sing N N 655 TTD C2R H2R2 sing N N 656 TTD C1R N1T sing N N 657 TTD C1R H1R sing N N 658 TTD N1T C2T sing N N 659 TTD N1T C6T sing N N 660 TTD C2T O2T doub N N 661 TTD C2T N3T sing N N 662 TTD N3T C4T sing N N 663 TTD N3T HT sing N N 664 TTD C4T O4T doub N N 665 TTD C4T C5T sing N N 666 TTD C5T C5M sing N N 667 TTD C5T C6T sing N N 668 TTD C5M H71 sing N N 669 TTD C5M H72 sing N N 670 TTD C5M H73 sing N N 671 TTD C6T H6T sing N N 672 TTD "C4'" "C3'" sing N N 673 TTD "C4'" "H4'" sing N N 674 TTD "C3'" "O3'" sing N N 675 TTD "C3'" H1 sing N N 676 TTD "O3'" "HO3'" sing N N 677 TYR N CA sing N N 678 TYR N H sing N N 679 TYR N H2 sing N N 680 TYR CA C sing N N 681 TYR CA CB sing N N 682 TYR CA HA sing N N 683 TYR C O doub N N 684 TYR C OXT sing N N 685 TYR CB CG sing N N 686 TYR CB HB2 sing N N 687 TYR CB HB3 sing N N 688 TYR CG CD1 doub Y N 689 TYR CG CD2 sing Y N 690 TYR CD1 CE1 sing Y N 691 TYR CD1 HD1 sing N N 692 TYR CD2 CE2 doub Y N 693 TYR CD2 HD2 sing N N 694 TYR CE1 CZ doub Y N 695 TYR CE1 HE1 sing N N 696 TYR CE2 CZ sing Y N 697 TYR CE2 HE2 sing N N 698 TYR CZ OH sing N N 699 TYR OH HH sing N N 700 TYR OXT HXT sing N N 701 VAL N CA sing N N 702 VAL N H sing N N 703 VAL N H2 sing N N 704 VAL CA C sing N N 705 VAL CA CB sing N N 706 VAL CA HA sing N N 707 VAL C O doub N N 708 VAL C OXT sing N N 709 VAL CB CG1 sing N N 710 VAL CB CG2 sing N N 711 VAL CB HB sing N N 712 VAL CG1 HG11 sing N N 713 VAL CG1 HG12 sing N N 714 VAL CG1 HG13 sing N N 715 VAL CG2 HG21 sing N N 716 VAL CG2 HG22 sing N N 717 VAL CG2 HG23 sing N N 718 VAL OXT HXT sing N N 719 # _ndb_struct_conf_na.entry_id 3SI8 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 6 1_555 C DT 8 1_555 0.221 0.013 -0.588 -19.362 -1.414 10.913 1 T_DA6:DT8_P T 6 ? P 8 ? 20 1 1 B DT 7 1_555 C DA 7 1_555 0.116 -0.318 -0.266 2.985 4.651 -0.933 2 T_DT7:DA7_P T 7 ? P 7 ? 20 1 1 B DG 8 1_555 C DC 6 1_555 0.002 -0.124 -0.719 -7.983 -8.041 4.101 3 T_DG8:DC6_P T 8 ? P 6 ? 19 1 1 B DA 9 1_555 C DT 5 1_555 -0.201 0.001 -0.571 -0.412 -12.340 4.049 4 T_DA9:DT5_P T 9 ? P 5 ? 20 1 1 B DC 10 1_555 C DG 4 1_555 0.039 -0.277 -0.516 6.271 -10.967 -2.338 5 T_DC10:DG4_P T 10 ? P 4 ? 19 1 1 B DG 11 1_555 C DC 3 1_555 -0.122 -0.249 0.350 2.182 -4.160 -4.198 6 T_DG11:DC3_P T 11 ? P 3 ? 19 1 1 B DC 12 1_555 C DG 2 1_555 0.311 -0.037 -0.030 13.367 0.790 -4.584 7 T_DC12:DG2_P T 12 ? P 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 6 1_555 C DT 8 1_555 B DT 7 1_555 C DA 7 1_555 -1.131 -0.646 2.944 -0.185 11.502 24.148 -3.973 2.406 2.400 25.709 0.414 26.711 1 TT_DA6DT7:DA7DT8_PP T 6 ? P 8 ? T 7 ? P 7 ? 1 B DT 7 1_555 C DA 7 1_555 B DG 8 1_555 C DC 6 1_555 0.049 -0.819 3.791 1.693 7.640 30.045 -3.193 0.277 3.480 14.432 -3.198 31.025 2 TT_DT7DG8:DC6DA7_PP T 7 ? P 7 ? T 8 ? P 6 ? 1 B DG 8 1_555 C DC 6 1_555 B DA 9 1_555 C DT 5 1_555 -0.258 -0.342 3.264 -0.679 1.161 32.028 -0.828 0.345 3.254 2.103 1.230 32.056 3 TT_DG8DA9:DT5DC6_PP T 8 ? P 6 ? T 9 ? P 5 ? 1 B DA 9 1_555 C DT 5 1_555 B DC 10 1_555 C DG 4 1_555 -0.780 -0.124 3.189 -0.118 3.323 32.470 -0.783 1.368 3.164 5.924 0.211 32.635 4 TT_DA9DC10:DG4DT5_PP T 9 ? P 5 ? T 10 ? P 4 ? 1 B DC 10 1_555 C DG 4 1_555 B DG 11 1_555 C DC 3 1_555 0.255 0.769 3.550 -4.967 9.117 35.159 -0.169 -1.164 3.566 14.701 8.009 36.614 5 TT_DC10DG11:DC3DG4_PP T 10 ? P 4 ? T 11 ? P 3 ? 1 B DG 11 1_555 C DC 3 1_555 B DC 12 1_555 C DG 2 1_555 0.254 -0.035 3.083 1.583 11.473 27.680 -2.307 -0.183 2.853 22.759 -3.139 29.962 6 TT_DG11DC12:DG2DC3_PP T 11 ? P 3 ? T 12 ? P 2 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3MR2 _pdbx_initial_refinement_model.details 'pdb entry 3MR2' # _atom_sites.entry_id 3SI8 _atom_sites.fract_transf_matrix[1][1] 0.016330 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012460 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007155 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO MG N O P S # loop_