HEADER HYDROLASE/HYDROLASE INHIBITOR 17-JUN-11 3SIE TITLE CRYSTAL STRUCTURE OF THE PDE5A1 CATALYTIC DOMAIN IN COMPLEX WITH NOVEL TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 535-860; COMPND 5 SYNONYM: PDE5A1, CGMP-BINDING CGMP-SPECIFIC PHOSPHODIESTERASE, CGB- COMPND 6 PDE; COMPND 7 EC: 3.1.4.35; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: PDE5, PDE5A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PDE5A INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.T.CHEN,T.CHEN,Y.C.XU REVDAT 3 20-MAR-24 3SIE 1 REMARK SEQADV REVDAT 2 27-JUN-12 3SIE 1 REMARK REVDAT 1 24-AUG-11 3SIE 0 JRNL AUTH Z.XU,Z.LIU,T.CHEN,T.T.CHEN,Z.WANG,G.TIAN,J.SHI,X.WANG,Y.LU, JRNL AUTH 2 X.YAN,G.WANG,H.JIANG,K.CHEN,S.WANG,Y.XU,J.SHEN,W.ZHU JRNL TITL UTILIZATION OF HALOGEN BOND IN LEAD OPTIMIZATION: A CASE JRNL TITL 2 STUDY OF RATIONAL DESIGN OF POTENT PHOSPHODIESTERASE TYPE 5 JRNL TITL 3 (PDE5) INHIBITORS. JRNL REF J.MED.CHEM. V. 54 5607 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21714539 JRNL DOI 10.1021/JM200644R REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 53386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0740 - 4.2912 1.00 4983 154 0.1817 0.2051 REMARK 3 2 4.2912 - 3.4064 1.00 4777 147 0.1727 0.1990 REMARK 3 3 3.4064 - 2.9759 1.00 4730 147 0.1834 0.2193 REMARK 3 4 2.9759 - 2.7038 1.00 4739 146 0.1889 0.2377 REMARK 3 5 2.7038 - 2.5100 1.00 4696 145 0.1910 0.2543 REMARK 3 6 2.5100 - 2.3620 1.00 4689 146 0.1920 0.2618 REMARK 3 7 2.3620 - 2.2438 0.98 4581 141 0.2407 0.3065 REMARK 3 8 2.2438 - 2.1461 0.98 4619 143 0.2254 0.2704 REMARK 3 9 2.1461 - 2.0635 1.00 4684 145 0.1951 0.2641 REMARK 3 10 2.0635 - 1.9923 1.00 4643 143 0.2009 0.2714 REMARK 3 11 1.9923 - 1.9300 1.00 4644 144 0.2231 0.2803 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 40.63 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04660 REMARK 3 B22 (A**2) : 2.28300 REMARK 3 B33 (A**2) : -3.32960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4752 REMARK 3 ANGLE : 1.100 6454 REMARK 3 CHIRALITY : 0.068 757 REMARK 3 PLANARITY : 0.005 809 REMARK 3 DIHEDRAL : 12.729 1681 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53386 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 47.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.1M SODIUM ACETATE, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.59000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.13000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.13000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.59000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 514 REMARK 465 GLY A 515 REMARK 465 SER A 516 REMARK 465 SER A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 SER A 524 REMARK 465 SER A 525 REMARK 465 GLY A 526 REMARK 465 LEU A 527 REMARK 465 VAL A 528 REMARK 465 PRO A 529 REMARK 465 ARG A 530 REMARK 465 GLY A 531 REMARK 465 SER A 532 REMARK 465 HIS A 533 REMARK 465 MET A 534 REMARK 465 GLU A 535 REMARK 465 GLU A 536 REMARK 465 THR A 537 REMARK 465 ARG A 658 REMARK 465 GLY A 659 REMARK 465 VAL A 660 REMARK 465 ASN A 661 REMARK 465 ASN A 662 REMARK 465 SER A 663 REMARK 465 TYR A 664 REMARK 465 ILE A 665 REMARK 465 GLN A 666 REMARK 465 ARG A 667 REMARK 465 SER A 668 REMARK 465 GLU A 669 REMARK 465 HIS A 670 REMARK 465 PRO A 671 REMARK 465 LEU A 672 REMARK 465 ALA A 673 REMARK 465 GLN A 674 REMARK 465 LEU A 675 REMARK 465 TYR A 676 REMARK 465 CYS A 677 REMARK 465 HIS A 678 REMARK 465 SER A 679 REMARK 465 LEU A 797 REMARK 465 ASN A 798 REMARK 465 ILE A 799 REMARK 465 GLU A 800 REMARK 465 MET B 514 REMARK 465 GLY B 515 REMARK 465 SER B 516 REMARK 465 SER B 517 REMARK 465 HIS B 518 REMARK 465 HIS B 519 REMARK 465 HIS B 520 REMARK 465 HIS B 521 REMARK 465 HIS B 522 REMARK 465 HIS B 523 REMARK 465 SER B 524 REMARK 465 SER B 525 REMARK 465 GLY B 526 REMARK 465 LEU B 527 REMARK 465 VAL B 528 REMARK 465 PRO B 529 REMARK 465 ARG B 530 REMARK 465 GLY B 531 REMARK 465 SER B 532 REMARK 465 HIS B 533 REMARK 465 MET B 534 REMARK 465 GLU B 535 REMARK 465 GLU B 536 REMARK 465 ASP B 656 REMARK 465 HIS B 657 REMARK 465 ARG B 658 REMARK 465 GLY B 659 REMARK 465 VAL B 660 REMARK 465 ASN B 661 REMARK 465 ASN B 662 REMARK 465 SER B 663 REMARK 465 TYR B 664 REMARK 465 ILE B 665 REMARK 465 GLN B 666 REMARK 465 ARG B 667 REMARK 465 SER B 668 REMARK 465 GLU B 669 REMARK 465 HIS B 670 REMARK 465 PRO B 671 REMARK 465 LEU B 672 REMARK 465 ALA B 673 REMARK 465 GLN B 674 REMARK 465 LEU B 675 REMARK 465 TYR B 676 REMARK 465 CYS B 677 REMARK 465 HIS B 678 REMARK 465 SER B 679 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 538 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 539 OE1 REMARK 470 GLN A 541 CG CD OE1 NE2 REMARK 470 LYS A 555 CE NZ REMARK 470 ASN A 583 ND2 REMARK 470 GLN A 586 CG CD OE1 NE2 REMARK 470 GLN A 589 OE1 REMARK 470 LYS A 591 CD CE NZ REMARK 470 GLU A 593 CG CD OE1 OE2 REMARK 470 LYS A 604 CD CE NZ REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 ASN A 636 CG OD1 ND2 REMARK 470 ILE A 680 CG1 CG2 CD1 REMARK 470 MET A 681 CE REMARK 470 GLU A 682 CD OE1 OE2 REMARK 470 HIS A 683 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 688 CD OE1 NE2 REMARK 470 MET A 691 CG SD CE REMARK 470 ILE A 706 CD1 REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 LYS A 714 CG CD CE NZ REMARK 470 LEU A 727 CD1 REMARK 470 LYS A 730 CE NZ REMARK 470 LYS A 741 CE NZ REMARK 470 GLU A 747 CG CD OE1 OE2 REMARK 470 GLN A 789 CD OE1 NE2 REMARK 470 ARG A 792 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 793 CD OE1 OE2 REMARK 470 ARG A 794 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 795 CG CD CE NZ REMARK 470 GLU A 796 CG CD OE1 OE2 REMARK 470 ASP A 803 CG OD1 OD2 REMARK 470 MET A 805 CE REMARK 470 ARG A 807 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 808 CG CD OE1 OE2 REMARK 470 LYS A 809 CG CD CE NZ REMARK 470 LYS A 810 CG CD CE NZ REMARK 470 GLU A 837 CG CD OE1 OE2 REMARK 470 LYS A 848 NZ REMARK 470 GLN A 851 OE1 NE2 REMARK 470 LYS A 852 NZ REMARK 470 GLN A 859 CG CD OE1 NE2 REMARK 470 GLN A 860 O REMARK 470 ARG B 538 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 539 CG CD OE1 OE2 REMARK 470 GLN B 541 CG CD OE1 NE2 REMARK 470 SER B 542 OG REMARK 470 GLN B 552 CD OE1 NE2 REMARK 470 LYS B 555 NZ REMARK 470 GLN B 586 OE1 NE2 REMARK 470 GLN B 589 NE2 REMARK 470 LYS B 591 CE NZ REMARK 470 GLU B 593 CD OE1 OE2 REMARK 470 LYS B 604 CD CE NZ REMARK 470 ARG B 607 NE CZ NH1 NH2 REMARK 470 LYS B 608 CG CD CE NZ REMARK 470 LYS B 633 NZ REMARK 470 ILE B 680 CG2 REMARK 470 GLU B 682 CG CD OE1 OE2 REMARK 470 GLN B 688 NE2 REMARK 470 LEU B 690 CD1 CD2 REMARK 470 ILE B 706 CD1 REMARK 470 GLU B 707 CG CD OE1 OE2 REMARK 470 LYS B 710 CG CD CE NZ REMARK 470 LYS B 714 CG CD CE NZ REMARK 470 LYS B 741 CE NZ REMARK 470 ASP B 788 OD1 OD2 REMARK 470 GLN B 789 CD OE1 NE2 REMARK 470 ARG B 792 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 793 CG CD OE1 OE2 REMARK 470 ARG B 794 NH1 NH2 REMARK 470 LYS B 795 CG CD CE NZ REMARK 470 GLU B 796 CG CD OE1 OE2 REMARK 470 GLU B 800 CG CD OE1 OE2 REMARK 470 ASP B 803 CG OD1 OD2 REMARK 470 LEU B 804 CG CD1 CD2 REMARK 470 MET B 805 SD CE REMARK 470 GLU B 808 CG CD OE1 OE2 REMARK 470 LYS B 809 CG CD CE NZ REMARK 470 LYS B 810 CG CD CE NZ REMARK 470 ASN B 811 CG OD1 ND2 REMARK 470 LYS B 812 CD CE NZ REMARK 470 GLN B 851 CD OE1 NE2 REMARK 470 LYS B 852 CE NZ REMARK 470 GLN B 859 OE1 REMARK 470 GLN B 860 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 630 -78.18 -86.52 REMARK 500 ASN A 742 46.25 38.58 REMARK 500 LYS B 630 -75.81 -91.00 REMARK 500 MET B 681 49.76 -97.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5BO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5BO B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SHY RELATED DB: PDB REMARK 900 RELATED ID: 3SHZ RELATED DB: PDB DBREF 3SIE A 535 860 UNP O76074 PDE5A_HUMAN 535 860 DBREF 3SIE B 535 860 UNP O76074 PDE5A_HUMAN 535 860 SEQADV 3SIE MET A 514 UNP O76074 EXPRESSION TAG SEQADV 3SIE GLY A 515 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER A 516 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER A 517 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS A 518 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS A 519 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS A 520 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS A 521 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS A 522 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS A 523 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER A 524 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER A 525 UNP O76074 EXPRESSION TAG SEQADV 3SIE GLY A 526 UNP O76074 EXPRESSION TAG SEQADV 3SIE LEU A 527 UNP O76074 EXPRESSION TAG SEQADV 3SIE VAL A 528 UNP O76074 EXPRESSION TAG SEQADV 3SIE PRO A 529 UNP O76074 EXPRESSION TAG SEQADV 3SIE ARG A 530 UNP O76074 EXPRESSION TAG SEQADV 3SIE GLY A 531 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER A 532 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS A 533 UNP O76074 EXPRESSION TAG SEQADV 3SIE MET A 534 UNP O76074 EXPRESSION TAG SEQADV 3SIE MET B 514 UNP O76074 EXPRESSION TAG SEQADV 3SIE GLY B 515 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER B 516 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER B 517 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS B 518 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS B 519 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS B 520 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS B 521 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS B 522 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS B 523 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER B 524 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER B 525 UNP O76074 EXPRESSION TAG SEQADV 3SIE GLY B 526 UNP O76074 EXPRESSION TAG SEQADV 3SIE LEU B 527 UNP O76074 EXPRESSION TAG SEQADV 3SIE VAL B 528 UNP O76074 EXPRESSION TAG SEQADV 3SIE PRO B 529 UNP O76074 EXPRESSION TAG SEQADV 3SIE ARG B 530 UNP O76074 EXPRESSION TAG SEQADV 3SIE GLY B 531 UNP O76074 EXPRESSION TAG SEQADV 3SIE SER B 532 UNP O76074 EXPRESSION TAG SEQADV 3SIE HIS B 533 UNP O76074 EXPRESSION TAG SEQADV 3SIE MET B 534 UNP O76074 EXPRESSION TAG SEQRES 1 A 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 347 LEU VAL PRO ARG GLY SER HIS MET GLU GLU THR ARG GLU SEQRES 3 A 347 LEU GLN SER LEU ALA ALA ALA VAL VAL PRO SER ALA GLN SEQRES 4 A 347 THR LEU LYS ILE THR ASP PHE SER PHE SER ASP PHE GLU SEQRES 5 A 347 LEU SER ASP LEU GLU THR ALA LEU CYS THR ILE ARG MET SEQRES 6 A 347 PHE THR ASP LEU ASN LEU VAL GLN ASN PHE GLN MET LYS SEQRES 7 A 347 HIS GLU VAL LEU CYS ARG TRP ILE LEU SER VAL LYS LYS SEQRES 8 A 347 ASN TYR ARG LYS ASN VAL ALA TYR HIS ASN TRP ARG HIS SEQRES 9 A 347 ALA PHE ASN THR ALA GLN CYS MET PHE ALA ALA LEU LYS SEQRES 10 A 347 ALA GLY LYS ILE GLN ASN LYS LEU THR ASP LEU GLU ILE SEQRES 11 A 347 LEU ALA LEU LEU ILE ALA ALA LEU SER HIS ASP LEU ASP SEQRES 12 A 347 HIS ARG GLY VAL ASN ASN SER TYR ILE GLN ARG SER GLU SEQRES 13 A 347 HIS PRO LEU ALA GLN LEU TYR CYS HIS SER ILE MET GLU SEQRES 14 A 347 HIS HIS HIS PHE ASP GLN CYS LEU MET ILE LEU ASN SER SEQRES 15 A 347 PRO GLY ASN GLN ILE LEU SER GLY LEU SER ILE GLU GLU SEQRES 16 A 347 TYR LYS THR THR LEU LYS ILE ILE LYS GLN ALA ILE LEU SEQRES 17 A 347 ALA THR ASP LEU ALA LEU TYR ILE LYS ARG ARG GLY GLU SEQRES 18 A 347 PHE PHE GLU LEU ILE ARG LYS ASN GLN PHE ASN LEU GLU SEQRES 19 A 347 ASP PRO HIS GLN LYS GLU LEU PHE LEU ALA MET LEU MET SEQRES 20 A 347 THR ALA CYS ASP LEU SER ALA ILE THR LYS PRO TRP PRO SEQRES 21 A 347 ILE GLN GLN ARG ILE ALA GLU LEU VAL ALA THR GLU PHE SEQRES 22 A 347 PHE ASP GLN GLY ASP ARG GLU ARG LYS GLU LEU ASN ILE SEQRES 23 A 347 GLU PRO THR ASP LEU MET ASN ARG GLU LYS LYS ASN LYS SEQRES 24 A 347 ILE PRO SER MET GLN VAL GLY PHE ILE ASP ALA ILE CYS SEQRES 25 A 347 LEU GLN LEU TYR GLU ALA LEU THR HIS VAL SER GLU ASP SEQRES 26 A 347 CYS PHE PRO LEU LEU ASP GLY CYS ARG LYS ASN ARG GLN SEQRES 27 A 347 LYS TRP GLN ALA LEU ALA GLU GLN GLN SEQRES 1 B 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 347 LEU VAL PRO ARG GLY SER HIS MET GLU GLU THR ARG GLU SEQRES 3 B 347 LEU GLN SER LEU ALA ALA ALA VAL VAL PRO SER ALA GLN SEQRES 4 B 347 THR LEU LYS ILE THR ASP PHE SER PHE SER ASP PHE GLU SEQRES 5 B 347 LEU SER ASP LEU GLU THR ALA LEU CYS THR ILE ARG MET SEQRES 6 B 347 PHE THR ASP LEU ASN LEU VAL GLN ASN PHE GLN MET LYS SEQRES 7 B 347 HIS GLU VAL LEU CYS ARG TRP ILE LEU SER VAL LYS LYS SEQRES 8 B 347 ASN TYR ARG LYS ASN VAL ALA TYR HIS ASN TRP ARG HIS SEQRES 9 B 347 ALA PHE ASN THR ALA GLN CYS MET PHE ALA ALA LEU LYS SEQRES 10 B 347 ALA GLY LYS ILE GLN ASN LYS LEU THR ASP LEU GLU ILE SEQRES 11 B 347 LEU ALA LEU LEU ILE ALA ALA LEU SER HIS ASP LEU ASP SEQRES 12 B 347 HIS ARG GLY VAL ASN ASN SER TYR ILE GLN ARG SER GLU SEQRES 13 B 347 HIS PRO LEU ALA GLN LEU TYR CYS HIS SER ILE MET GLU SEQRES 14 B 347 HIS HIS HIS PHE ASP GLN CYS LEU MET ILE LEU ASN SER SEQRES 15 B 347 PRO GLY ASN GLN ILE LEU SER GLY LEU SER ILE GLU GLU SEQRES 16 B 347 TYR LYS THR THR LEU LYS ILE ILE LYS GLN ALA ILE LEU SEQRES 17 B 347 ALA THR ASP LEU ALA LEU TYR ILE LYS ARG ARG GLY GLU SEQRES 18 B 347 PHE PHE GLU LEU ILE ARG LYS ASN GLN PHE ASN LEU GLU SEQRES 19 B 347 ASP PRO HIS GLN LYS GLU LEU PHE LEU ALA MET LEU MET SEQRES 20 B 347 THR ALA CYS ASP LEU SER ALA ILE THR LYS PRO TRP PRO SEQRES 21 B 347 ILE GLN GLN ARG ILE ALA GLU LEU VAL ALA THR GLU PHE SEQRES 22 B 347 PHE ASP GLN GLY ASP ARG GLU ARG LYS GLU LEU ASN ILE SEQRES 23 B 347 GLU PRO THR ASP LEU MET ASN ARG GLU LYS LYS ASN LYS SEQRES 24 B 347 ILE PRO SER MET GLN VAL GLY PHE ILE ASP ALA ILE CYS SEQRES 25 B 347 LEU GLN LEU TYR GLU ALA LEU THR HIS VAL SER GLU ASP SEQRES 26 B 347 CYS PHE PRO LEU LEU ASP GLY CYS ARG LYS ASN ARG GLN SEQRES 27 B 347 LYS TRP GLN ALA LEU ALA GLU GLN GLN HET 5BO A 1 30 HET 5BO B 1 30 HETNAM 5BO 5-BROMO-6-ETHYL-2-{5-[(4-METHYLPIPERAZIN-1-YL) HETNAM 2 5BO SULFONYL]-2-PROPOXYPHENYL}PYRIMIDIN-4(3H)-ONE FORMUL 3 5BO 2(C20 H27 BR N4 O4 S) FORMUL 5 HOH *495(H2 O) HELIX 1 1 ARG A 538 ALA A 546 1 9 HELIX 2 2 SER A 550 LYS A 555 1 6 HELIX 3 3 SER A 567 LEU A 582 1 16 HELIX 4 4 ASN A 583 PHE A 588 1 6 HELIX 5 5 LYS A 591 ASN A 605 1 15 HELIX 6 6 ASN A 614 LYS A 630 1 17 HELIX 7 7 ILE A 634 LEU A 638 5 5 HELIX 8 8 THR A 639 HIS A 653 1 15 HELIX 9 9 PHE A 686 ASN A 694 1 9 HELIX 10 10 SER A 705 THR A 723 1 19 HELIX 11 11 ASP A 724 LYS A 741 1 18 HELIX 12 12 ASP A 748 LEU A 765 1 18 HELIX 13 13 SER A 766 LYS A 770 5 5 HELIX 14 14 PRO A 771 GLU A 796 1 26 HELIX 15 15 ASN A 806 ASN A 811 5 6 HELIX 16 16 LYS A 812 ILE A 824 1 13 HELIX 17 17 CYS A 825 SER A 836 1 12 HELIX 18 18 CYS A 839 GLN A 859 1 21 HELIX 19 19 THR B 537 ALA B 546 1 10 HELIX 20 20 SER B 550 LYS B 555 1 6 HELIX 21 21 SER B 567 LEU B 582 1 16 HELIX 22 22 ASN B 583 PHE B 588 1 6 HELIX 23 23 LYS B 591 TYR B 606 1 16 HELIX 24 24 ASN B 614 ALA B 631 1 18 HELIX 25 25 ILE B 634 LEU B 638 5 5 HELIX 26 26 THR B 639 HIS B 653 1 15 HELIX 27 27 PHE B 686 ASN B 694 1 9 HELIX 28 28 SER B 705 THR B 723 1 19 HELIX 29 29 ASP B 724 LYS B 741 1 18 HELIX 30 30 ASP B 748 LEU B 765 1 18 HELIX 31 31 SER B 766 LYS B 770 5 5 HELIX 32 32 PRO B 771 ASN B 798 1 28 HELIX 33 33 THR B 802 ASN B 811 5 10 HELIX 34 34 LYS B 812 ILE B 824 1 13 HELIX 35 35 CYS B 825 SER B 836 1 12 HELIX 36 36 CYS B 839 GLN B 860 1 22 SITE 1 AC1 11 HOH A 260 HOH A 267 TYR A 612 ALA A 779 SITE 2 AC1 11 PHE A 786 LEU A 804 MET A 816 GLN A 817 SITE 3 AC1 11 GLY A 819 PHE A 820 GLU B 858 SITE 1 AC2 7 GLU A 858 HOH B 270 TYR B 612 MET B 816 SITE 2 AC2 7 GLN B 817 GLY B 819 PHE B 820 CRYST1 65.180 94.120 114.260 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008752 0.00000