HEADER HYDROLASE 19-JUN-11 3SIM TITLE CRYSTALLOGRAPHIC STRUCTURE ANALYSIS OF FAMILY 18 CHITINASE FROM CROCUS TITLE 2 VERNUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN, FAMILY 18 CHITINASE; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CROCUS VERNUS; SOURCE 3 ORGANISM_TAXID: 87752 KEYWDS FAMILY 18 PLANT CHITINASE, TIM BARREL, CHITIN BINDING, GLYCOSYL KEYWDS 2 HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.AKREM,S.IQBAL,F.BUCK,A.NEGM,M.PERBANDT,C.BETZEL REVDAT 2 13-SEP-23 3SIM 1 REMARK REVDAT 1 06-JUL-11 3SIM 0 JRNL AUTH A.AKREM,S.IQBAL,F.BUCK,A.NEGM,M.PERBANDT,C.BETZEL JRNL TITL CRYSTALLOGRAPHIC STRUCTURE ANALYSIS OF FAMILY 18 CHITINASE JRNL TITL 2 FROM CROCUS VERNUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 34613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1831 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.885 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4367 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5927 ; 1.628 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 5.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;33.330 ;24.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 649 ;13.901 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 655 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3350 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2729 ; 0.946 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4394 ; 1.626 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1638 ; 2.627 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1532 ; 3.709 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 275 5 REMARK 3 1 B 1 B 275 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1093 ; 0.140 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1008 ; 0.490 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1093 ; 1.640 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1008 ; 2.260 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34613 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.01200 REMARK 200 R SYM (I) : 0.01200 REMARK 200 FOR THE DATA SET : 2.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1NAR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES, 20 % (W/V) PEG 8000, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.13500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.13500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 43 OG REMARK 480 PRO A 44 CB CG CD REMARK 480 ARG A 77 NH1 NH2 REMARK 480 ASN A 178 ND2 REMARK 480 LYS A 211 CE NZ REMARK 480 HIS A 224 CG CD2 REMARK 480 LYS A 259 NZ REMARK 480 GLU A 267 OE1 OE2 REMARK 480 LYS B 28 NZ REMARK 480 SER B 42 OG REMARK 480 ARG B 77 CD NE NH1 NH2 REMARK 480 ARG B 116 NH1 NH2 REMARK 480 ASN B 118 ND2 REMARK 480 GLU B 139 CG REMARK 480 LYS B 150 CE REMARK 480 LYS B 177 CD CE REMARK 480 ASN B 178 ND2 REMARK 480 SER B 192 C O REMARK 480 ASN B 205 ND2 REMARK 480 HIS B 224 CA CB REMARK 480 PRO B 225 N CA O CB CD REMARK 480 LYS B 232 CG CD CE NZ REMARK 480 LYS B 242 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 2 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ASP A 100 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU A 216 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 VAL A 230 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP A 231 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 100 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL B 165 CG1 - CB - CG2 ANGL. DEV. = 12.3 DEGREES REMARK 500 ASP B 166 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 LEU B 216 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 210 57.58 -93.99 REMARK 500 LEU B 61 58.73 -93.99 REMARK 500 TYR B 210 56.77 -99.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 276 DBREF 3SIM A 1 275 PDB 3SIM 3SIM 1 275 DBREF 3SIM B 1 275 PDB 3SIM 3SIM 1 275 SEQRES 1 A 275 THR LEU PHE VAL GLU TYR ILE GLY TYR PRO LEU PHE SER SEQRES 2 A 275 GLY VAL LYS PHE SER ASP VAL PRO ILE ASN PRO HIS ILE SEQRES 3 A 275 THR LYS PHE GLN PHE VAL LEU SER PHE ALA VAL ASP TYR SEQRES 4 A 275 THR ALA SER SER PRO HIS THR SER THR ASN GLY LYS PHE SEQRES 5 A 275 ASN VAL PHE TRP ASP SER SER ILE LEU GLY PRO ASP GLN SEQRES 6 A 275 ILE SER ALA ILE LYS SER SER HIS PRO ASN VAL ARG VAL SEQRES 7 A 275 ALA VAL SER LEU GLY GLY ALA SER VAL GLY SER ASN THR SEQRES 8 A 275 VAL GLN PHE GLN ALA ALA SER VAL ASP SER TRP VAL SER SEQRES 9 A 275 ASN ALA VAL THR SER LEU THR ARG ILE ILE GLN ARG TYR SEQRES 10 A 275 ASN LEU ASP GLY ILE ASP ILE ASP TYR GLU HIS PHE GLN SEQRES 11 A 275 ASN THR ASP LYS ASN THR PHE ALA GLU CYS ILE GLY ARG SEQRES 12 A 275 LEU ILE THR THR LEU LYS LYS ASN GLY VAL ILE SER PHE SEQRES 13 A 275 ALA SER ILE SER PRO PHE PRO SER VAL ASP GLU TYR TYR SEQRES 14 A 275 LEU ALA LEU PHE ASN GLU TYR LYS ASN ALA ILE ASN HIS SEQRES 15 A 275 ILE ASN TYR GLN PHE LYS ALA TYR ASP SER SER THR SER SEQRES 16 A 275 VAL ASP LYS PHE LEU GLY TYR TYR ASN ASN ALA ALA SER SEQRES 17 A 275 LYS TYR LYS GLY GLY ASN VAL LEU ILE SER PHE SER THR SEQRES 18 A 275 GLY PRO HIS PRO GLY GLY LEU PRO VAL ASP LYS GLY PHE SEQRES 19 A 275 PHE ASP ALA ALA THR SER LEU LYS ASN LYS GLY LYS LEU SEQRES 20 A 275 HIS GLY ILE ALA VAL TRP THR ALA ASP THR SER LYS SER SEQRES 21 A 275 SER ASP PHE ARG TYR GLU GLU GLU ALA GLN ALA PHE LEU SEQRES 22 A 275 VAL SER SEQRES 1 B 275 THR LEU PHE VAL GLU TYR ILE GLY TYR PRO LEU PHE SER SEQRES 2 B 275 GLY VAL LYS PHE SER ASP VAL PRO ILE ASN PRO HIS ILE SEQRES 3 B 275 THR LYS PHE GLN PHE VAL LEU SER PHE ALA VAL ASP TYR SEQRES 4 B 275 THR ALA SER SER PRO HIS THR SER THR ASN GLY LYS PHE SEQRES 5 B 275 ASN VAL PHE TRP ASP SER SER ILE LEU GLY PRO ASP GLN SEQRES 6 B 275 ILE SER ALA ILE LYS SER SER HIS PRO ASN VAL ARG VAL SEQRES 7 B 275 ALA VAL SER LEU GLY GLY ALA SER VAL GLY SER ASN THR SEQRES 8 B 275 VAL GLN PHE GLN ALA ALA SER VAL ASP SER TRP VAL SER SEQRES 9 B 275 ASN ALA VAL THR SER LEU THR ARG ILE ILE GLN ARG TYR SEQRES 10 B 275 ASN LEU ASP GLY ILE ASP ILE ASP TYR GLU HIS PHE GLN SEQRES 11 B 275 ASN THR ASP LYS ASN THR PHE ALA GLU CYS ILE GLY ARG SEQRES 12 B 275 LEU ILE THR THR LEU LYS LYS ASN GLY VAL ILE SER PHE SEQRES 13 B 275 ALA SER ILE SER PRO PHE PRO SER VAL ASP GLU TYR TYR SEQRES 14 B 275 LEU ALA LEU PHE ASN GLU TYR LYS ASN ALA ILE ASN HIS SEQRES 15 B 275 ILE ASN TYR GLN PHE LYS ALA TYR ASP SER SER THR SER SEQRES 16 B 275 VAL ASP LYS PHE LEU GLY TYR TYR ASN ASN ALA ALA SER SEQRES 17 B 275 LYS TYR LYS GLY GLY ASN VAL LEU ILE SER PHE SER THR SEQRES 18 B 275 GLY PRO HIS PRO GLY GLY LEU PRO VAL ASP LYS GLY PHE SEQRES 19 B 275 PHE ASP ALA ALA THR SER LEU LYS ASN LYS GLY LYS LEU SEQRES 20 B 275 HIS GLY ILE ALA VAL TRP THR ALA ASP THR SER LYS SER SEQRES 21 B 275 SER ASP PHE ARG TYR GLU GLU GLU ALA GLN ALA PHE LEU SEQRES 22 B 275 VAL SER HET ACT A 276 4 HET GOL A 277 6 HET GOL B 276 6 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *406(H2 O) HELIX 1 1 LYS A 16 VAL A 20 5 5 HELIX 2 2 GLY A 62 HIS A 73 1 12 HELIX 3 3 SER A 98 TYR A 117 1 20 HELIX 4 4 ASP A 133 ASN A 151 1 19 HELIX 5 5 PHE A 162 SER A 164 5 3 HELIX 6 6 VAL A 165 TYR A 176 1 12 HELIX 7 7 LYS A 177 ILE A 180 5 4 HELIX 8 8 GLN A 186 TYR A 190 5 5 HELIX 9 9 SER A 195 TYR A 210 1 16 HELIX 10 10 GLY A 233 LYS A 244 1 12 HELIX 11 11 THR A 254 LYS A 259 1 6 HELIX 12 12 SER A 260 ASP A 262 5 3 HELIX 13 13 PHE A 263 SER A 275 1 13 HELIX 14 14 LYS B 16 VAL B 20 5 5 HELIX 15 15 GLY B 62 HIS B 73 1 12 HELIX 16 16 SER B 98 ASN B 118 1 21 HELIX 17 17 ASP B 133 ASN B 151 1 19 HELIX 18 18 PHE B 162 SER B 164 5 3 HELIX 19 19 VAL B 165 LYS B 177 1 13 HELIX 20 20 ASN B 178 ILE B 180 5 3 HELIX 21 21 GLN B 186 TYR B 190 5 5 HELIX 22 22 SER B 195 TYR B 210 1 16 HELIX 23 23 GLY B 233 LYS B 244 1 12 HELIX 24 24 THR B 254 LYS B 259 1 6 HELIX 25 25 SER B 260 ASP B 262 5 3 HELIX 26 26 PHE B 263 SER B 275 1 13 SHEET 1 A10 ASN A 53 VAL A 54 0 SHEET 2 A10 LYS A 28 VAL A 37 -1 N VAL A 37 O ASN A 53 SHEET 3 A10 VAL A 76 GLY A 83 1 O SER A 81 N LEU A 33 SHEET 4 A10 GLY A 121 ASP A 125 1 O ASP A 123 N LEU A 82 SHEET 5 A10 PHE A 156 ILE A 159 1 O SER A 158 N ILE A 124 SHEET 6 A10 HIS A 182 ASN A 184 1 O ASN A 184 N ILE A 159 SHEET 7 A10 VAL A 215 SER A 220 1 O LEU A 216 N ILE A 183 SHEET 8 A10 ILE A 250 TRP A 253 1 O ALA A 251 N ILE A 217 SHEET 9 A10 LEU A 2 ILE A 7 1 N VAL A 4 O VAL A 252 SHEET 10 A10 LYS A 28 VAL A 37 1 O SER A 34 N ILE A 7 SHEET 1 B 2 SER A 86 VAL A 87 0 SHEET 2 B 2 ASN A 90 THR A 91 -1 O ASN A 90 N VAL A 87 SHEET 1 C10 ASN B 53 VAL B 54 0 SHEET 2 C10 LYS B 28 VAL B 37 -1 N VAL B 37 O ASN B 53 SHEET 3 C10 VAL B 76 GLY B 83 1 O ALA B 79 N PHE B 31 SHEET 4 C10 GLY B 121 ASP B 125 1 O ASP B 123 N LEU B 82 SHEET 5 C10 PHE B 156 ILE B 159 1 O SER B 158 N ILE B 122 SHEET 6 C10 HIS B 182 ASN B 184 1 O ASN B 184 N ILE B 159 SHEET 7 C10 VAL B 215 SER B 220 1 O LEU B 216 N ILE B 183 SHEET 8 C10 ILE B 250 TRP B 253 1 O ALA B 251 N ILE B 217 SHEET 9 C10 LEU B 2 ILE B 7 1 N VAL B 4 O VAL B 252 SHEET 10 C10 LYS B 28 VAL B 37 1 O SER B 34 N ILE B 7 SHEET 1 D 2 SER B 86 VAL B 87 0 SHEET 2 D 2 ASN B 90 THR B 91 -1 O ASN B 90 N VAL B 87 CISPEP 1 TYR A 9 PRO A 10 0 2.17 CISPEP 2 SER A 34 PHE A 35 0 3.80 CISPEP 3 SER A 43 PRO A 44 0 -11.81 CISPEP 4 TRP A 253 THR A 254 0 4.81 CISPEP 5 TYR B 9 PRO B 10 0 -0.23 CISPEP 6 SER B 34 PHE B 35 0 4.30 CISPEP 7 SER B 43 PRO B 44 0 -6.31 CISPEP 8 TRP B 253 THR B 254 0 -4.07 SITE 1 AC1 4 THR A 48 ASN A 53 HOH A 566 ARG B 264 SITE 1 AC2 4 ALA A 96 ASN A 131 THR A 132 ASP A 133 SITE 1 AC3 3 GLU B 127 GLN B 186 ALA B 189 CRYST1 172.270 37.080 126.370 90.00 127.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005805 0.000000 0.004376 0.00000 SCALE2 0.000000 0.026969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009910 0.00000