data_3SJM # _entry.id 3SJM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SJM pdb_00003sjm 10.2210/pdb3sjm/pdb NDB NA1184 ? ? RCSB RCSB066282 ? ? WWPDB D_1000066282 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-31 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' # _database_PDB_caveat.id 1 _database_PDB_caveat.text ;THE NUCLEOTIDE LINKAGE BETWEEN DT 2 CHAIN C AND DC 3 CHAIN C IS NOT CONFORM TO THE STANDARD GEOMETRY ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SJM _pdbx_database_status.recvd_initial_deposition_date 2011-06-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1W0U . unspecified PDB 1VFC . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nair, S.K.' 1 'Sliverman, S.K.' 2 'Chen, J.H.' 3 'Xiao, Y.' 4 # _citation.id primary _citation.title 'Crystal Structure Analysis of TRF2-Dbd-DNA complex' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nair, S.K.' 1 ? primary 'Sliverman, S.K.' 2 ? primary 'Chen, J.H.' 3 ? primary 'Xiao, Y.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3') ; 5602.625 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*GP*A)-3') ; 5404.533 1 ? ? ? ? 3 polymer man 'Telomeric repeat-binding factor 2' 7502.660 2 ? ? ? ? 4 water nat water 18.015 298 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'TTAGGG repeat-binding factor 2, Telomeric DNA-binding protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DC)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)' CTCTAGGGTTAGGGTTAG C ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DT)(DA)(DA)(DC)(DC)(DC)(DT)(DA)(DA)(DC)(DC)(DC)(DT)(DA)(DG)(DA)' TCTAACCCTAACCCTAGA D ? 3 'polypeptide(L)' no no GSHMTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN GSHMTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN A,B ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DA n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DT n 1 10 DT n 1 11 DA n 1 12 DG n 1 13 DG n 1 14 DG n 1 15 DT n 1 16 DT n 1 17 DA n 1 18 DG n 2 1 DT n 2 2 DC n 2 3 DT n 2 4 DA n 2 5 DA n 2 6 DC n 2 7 DC n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DA n 2 12 DC n 2 13 DC n 2 14 DC n 2 15 DT n 2 16 DA n 2 17 DG n 2 18 DA n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MET n 3 5 THR n 3 6 THR n 3 7 ASN n 3 8 ILE n 3 9 THR n 3 10 LYS n 3 11 LYS n 3 12 GLN n 3 13 LYS n 3 14 TRP n 3 15 THR n 3 16 VAL n 3 17 GLU n 3 18 GLU n 3 19 SER n 3 20 GLU n 3 21 TRP n 3 22 VAL n 3 23 LYS n 3 24 ALA n 3 25 GLY n 3 26 VAL n 3 27 GLN n 3 28 LYS n 3 29 TYR n 3 30 GLY n 3 31 GLU n 3 32 GLY n 3 33 ASN n 3 34 TRP n 3 35 ALA n 3 36 ALA n 3 37 ILE n 3 38 SER n 3 39 LYS n 3 40 ASN n 3 41 TYR n 3 42 PRO n 3 43 PHE n 3 44 VAL n 3 45 ASN n 3 46 ARG n 3 47 THR n 3 48 ALA n 3 49 VAL n 3 50 MET n 3 51 ILE n 3 52 LYS n 3 53 ASP n 3 54 ARG n 3 55 TRP n 3 56 ARG n 3 57 THR n 3 58 MET n 3 59 LYS n 3 60 ARG n 3 61 LEU n 3 62 GLY n 3 63 MET n 3 64 ASN n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'telomeric repeat binding factor 2, TERF2, TRBF2, TRF2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Rosetta _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b/thrombin _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 ? ? ? C . n A 1 2 DT 2 2 2 DT DT C . n A 1 3 DC 3 3 3 DC DC C . n A 1 4 DT 4 4 4 DT DT C . n A 1 5 DA 5 5 5 DA DA C . n A 1 6 DG 6 6 6 DG DG C . n A 1 7 DG 7 7 7 DG DG C . n A 1 8 DG 8 8 8 DG DG C . n A 1 9 DT 9 9 9 DT DT C . n A 1 10 DT 10 10 10 DT DT C . n A 1 11 DA 11 11 11 DA DA C . n A 1 12 DG 12 12 12 DG DG C . n A 1 13 DG 13 13 13 DG DG C . n A 1 14 DG 14 14 14 DG DG C . n A 1 15 DT 15 15 15 DT DT C . n A 1 16 DT 16 16 16 DT DT C . n A 1 17 DA 17 17 17 DA DA C . n A 1 18 DG 18 18 18 DG DG C . n B 2 1 DT 1 1 ? ? ? D . n B 2 2 DC 2 2 2 DC DC D . n B 2 3 DT 3 3 3 DT DT D . n B 2 4 DA 4 4 4 DA DA D . n B 2 5 DA 5 5 5 DA DA D . n B 2 6 DC 6 6 6 DC DC D . n B 2 7 DC 7 7 7 DC DC D . n B 2 8 DC 8 8 8 DC DC D . n B 2 9 DT 9 9 9 DT DT D . n B 2 10 DA 10 10 10 DA DA D . n B 2 11 DA 11 11 11 DA DA D . n B 2 12 DC 12 12 12 DC DC D . n B 2 13 DC 13 13 13 DC DC D . n B 2 14 DC 14 14 14 DC DC D . n B 2 15 DT 15 15 15 DT DT D . n B 2 16 DA 16 16 16 DA DA D . n B 2 17 DG 17 17 17 DG DG D . n B 2 18 DA 18 18 18 DA DA D . n C 3 1 GLY 1 437 ? ? ? A . n C 3 2 SER 2 438 ? ? ? A . n C 3 3 HIS 3 439 ? ? ? A . n C 3 4 MET 4 440 ? ? ? A . n C 3 5 THR 5 441 ? ? ? A . n C 3 6 THR 6 442 ? ? ? A . n C 3 7 ASN 7 443 ? ? ? A . n C 3 8 ILE 8 444 ? ? ? A . n C 3 9 THR 9 445 ? ? ? A . n C 3 10 LYS 10 446 446 LYS LYS A . n C 3 11 LYS 11 447 447 LYS LYS A . n C 3 12 GLN 12 448 448 GLN GLN A . n C 3 13 LYS 13 449 449 LYS LYS A . n C 3 14 TRP 14 450 450 TRP TRP A . n C 3 15 THR 15 451 451 THR THR A . n C 3 16 VAL 16 452 452 VAL VAL A . n C 3 17 GLU 17 453 453 GLU GLU A . n C 3 18 GLU 18 454 454 GLU GLU A . n C 3 19 SER 19 455 455 SER SER A . n C 3 20 GLU 20 456 456 GLU GLU A . n C 3 21 TRP 21 457 457 TRP TRP A . n C 3 22 VAL 22 458 458 VAL VAL A . n C 3 23 LYS 23 459 459 LYS LYS A . n C 3 24 ALA 24 460 460 ALA ALA A . n C 3 25 GLY 25 461 461 GLY GLY A . n C 3 26 VAL 26 462 462 VAL VAL A . n C 3 27 GLN 27 463 463 GLN GLN A . n C 3 28 LYS 28 464 464 LYS LYS A . n C 3 29 TYR 29 465 465 TYR TYR A . n C 3 30 GLY 30 466 466 GLY GLY A . n C 3 31 GLU 31 467 467 GLU GLU A . n C 3 32 GLY 32 468 468 GLY GLY A . n C 3 33 ASN 33 469 469 ASN ASN A . n C 3 34 TRP 34 470 470 TRP TRP A . n C 3 35 ALA 35 471 471 ALA ALA A . n C 3 36 ALA 36 472 472 ALA ALA A . n C 3 37 ILE 37 473 473 ILE ILE A . n C 3 38 SER 38 474 474 SER SER A . n C 3 39 LYS 39 475 475 LYS LYS A . n C 3 40 ASN 40 476 476 ASN ASN A . n C 3 41 TYR 41 477 477 TYR TYR A . n C 3 42 PRO 42 478 478 PRO PRO A . n C 3 43 PHE 43 479 479 PHE PHE A . n C 3 44 VAL 44 480 480 VAL VAL A . n C 3 45 ASN 45 481 481 ASN ASN A . n C 3 46 ARG 46 482 482 ARG ARG A . n C 3 47 THR 47 483 483 THR THR A . n C 3 48 ALA 48 484 484 ALA ALA A . n C 3 49 VAL 49 485 485 VAL VAL A . n C 3 50 MET 50 486 486 MET MET A . n C 3 51 ILE 51 487 487 ILE ILE A . n C 3 52 LYS 52 488 488 LYS LYS A . n C 3 53 ASP 53 489 489 ASP ASP A . n C 3 54 ARG 54 490 490 ARG ARG A . n C 3 55 TRP 55 491 491 TRP TRP A . n C 3 56 ARG 56 492 492 ARG ARG A . n C 3 57 THR 57 493 493 THR THR A . n C 3 58 MET 58 494 494 MET MET A . n C 3 59 LYS 59 495 495 LYS LYS A . n C 3 60 ARG 60 496 496 ARG ARG A . n C 3 61 LEU 61 497 497 LEU LEU A . n C 3 62 GLY 62 498 498 GLY GLY A . n C 3 63 MET 63 499 499 MET MET A . n C 3 64 ASN 64 500 500 ASN ASN A . n D 3 1 GLY 1 437 ? ? ? B . n D 3 2 SER 2 438 ? ? ? B . n D 3 3 HIS 3 439 ? ? ? B . n D 3 4 MET 4 440 ? ? ? B . n D 3 5 THR 5 441 ? ? ? B . n D 3 6 THR 6 442 ? ? ? B . n D 3 7 ASN 7 443 ? ? ? B . n D 3 8 ILE 8 444 ? ? ? B . n D 3 9 THR 9 445 ? ? ? B . n D 3 10 LYS 10 446 446 LYS LYS B . n D 3 11 LYS 11 447 447 LYS LYS B . n D 3 12 GLN 12 448 448 GLN GLN B . n D 3 13 LYS 13 449 449 LYS LYS B . n D 3 14 TRP 14 450 450 TRP TRP B . n D 3 15 THR 15 451 451 THR THR B . n D 3 16 VAL 16 452 452 VAL VAL B . n D 3 17 GLU 17 453 453 GLU GLU B . n D 3 18 GLU 18 454 454 GLU GLU B . n D 3 19 SER 19 455 455 SER SER B . n D 3 20 GLU 20 456 456 GLU GLU B . n D 3 21 TRP 21 457 457 TRP TRP B . n D 3 22 VAL 22 458 458 VAL VAL B . n D 3 23 LYS 23 459 459 LYS LYS B . n D 3 24 ALA 24 460 460 ALA ALA B . n D 3 25 GLY 25 461 461 GLY GLY B . n D 3 26 VAL 26 462 462 VAL VAL B . n D 3 27 GLN 27 463 463 GLN GLN B . n D 3 28 LYS 28 464 464 LYS LYS B . n D 3 29 TYR 29 465 465 TYR TYR B . n D 3 30 GLY 30 466 466 GLY GLY B . n D 3 31 GLU 31 467 467 GLU GLU B . n D 3 32 GLY 32 468 468 GLY GLY B . n D 3 33 ASN 33 469 469 ASN ASN B . n D 3 34 TRP 34 470 470 TRP TRP B . n D 3 35 ALA 35 471 471 ALA ALA B . n D 3 36 ALA 36 472 472 ALA ALA B . n D 3 37 ILE 37 473 473 ILE ILE B . n D 3 38 SER 38 474 474 SER SER B . n D 3 39 LYS 39 475 475 LYS LYS B . n D 3 40 ASN 40 476 476 ASN ASN B . n D 3 41 TYR 41 477 477 TYR TYR B . n D 3 42 PRO 42 478 478 PRO PRO B . n D 3 43 PHE 43 479 479 PHE PHE B . n D 3 44 VAL 44 480 480 VAL VAL B . n D 3 45 ASN 45 481 481 ASN ASN B . n D 3 46 ARG 46 482 482 ARG ARG B . n D 3 47 THR 47 483 483 THR THR B . n D 3 48 ALA 48 484 484 ALA ALA B . n D 3 49 VAL 49 485 485 VAL VAL B . n D 3 50 MET 50 486 486 MET MET B . n D 3 51 ILE 51 487 487 ILE ILE B . n D 3 52 LYS 52 488 488 LYS LYS B . n D 3 53 ASP 53 489 489 ASP ASP B . n D 3 54 ARG 54 490 490 ARG ARG B . n D 3 55 TRP 55 491 491 TRP TRP B . n D 3 56 ARG 56 492 492 ARG ARG B . n D 3 57 THR 57 493 493 THR THR B . n D 3 58 MET 58 494 494 MET MET B . n D 3 59 LYS 59 495 495 LYS LYS B . n D 3 60 ARG 60 496 496 ARG ARG B . n D 3 61 LEU 61 497 497 LEU LEU B . n D 3 62 GLY 62 498 498 GLY GLY B . n D 3 63 MET 63 499 499 MET MET B . n D 3 64 ASN 64 500 500 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 19 19 HOH HOH C . E 4 HOH 2 20 20 HOH HOH C . E 4 HOH 3 21 21 HOH HOH C . E 4 HOH 4 22 22 HOH HOH C . E 4 HOH 5 23 23 HOH HOH C . E 4 HOH 6 24 24 HOH HOH C . E 4 HOH 7 25 25 HOH HOH C . E 4 HOH 8 26 26 HOH HOH C . E 4 HOH 9 27 27 HOH HOH C . E 4 HOH 10 28 28 HOH HOH C . E 4 HOH 11 29 29 HOH HOH C . E 4 HOH 12 30 30 HOH HOH C . E 4 HOH 13 31 31 HOH HOH C . E 4 HOH 14 32 32 HOH HOH C . E 4 HOH 15 33 33 HOH HOH C . E 4 HOH 16 34 34 HOH HOH C . E 4 HOH 17 35 35 HOH HOH C . E 4 HOH 18 38 38 HOH HOH C . E 4 HOH 19 84 84 HOH HOH C . E 4 HOH 20 110 110 HOH HOH C . E 4 HOH 21 111 111 HOH HOH C . E 4 HOH 22 114 114 HOH HOH C . E 4 HOH 23 117 117 HOH HOH C . E 4 HOH 24 119 119 HOH HOH C . E 4 HOH 25 124 124 HOH HOH C . E 4 HOH 26 127 127 HOH HOH C . E 4 HOH 27 129 129 HOH HOH C . E 4 HOH 28 131 131 HOH HOH C . E 4 HOH 29 132 132 HOH HOH C . E 4 HOH 30 133 133 HOH HOH C . E 4 HOH 31 134 134 HOH HOH C . E 4 HOH 32 150 150 HOH HOH C . E 4 HOH 33 151 151 HOH HOH C . E 4 HOH 34 161 161 HOH HOH C . E 4 HOH 35 162 162 HOH HOH C . E 4 HOH 36 164 164 HOH HOH C . E 4 HOH 37 165 165 HOH HOH C . E 4 HOH 38 166 166 HOH HOH C . E 4 HOH 39 176 176 HOH HOH C . E 4 HOH 40 184 184 HOH HOH C . E 4 HOH 41 190 190 HOH HOH C . E 4 HOH 42 197 197 HOH HOH C . E 4 HOH 43 198 198 HOH HOH C . E 4 HOH 44 202 202 HOH HOH C . E 4 HOH 45 212 212 HOH HOH C . E 4 HOH 46 217 217 HOH HOH C . E 4 HOH 47 232 232 HOH HOH C . E 4 HOH 48 234 234 HOH HOH C . E 4 HOH 49 237 237 HOH HOH C . E 4 HOH 50 239 239 HOH HOH C . E 4 HOH 51 258 258 HOH HOH C . E 4 HOH 52 259 259 HOH HOH C . E 4 HOH 53 261 261 HOH HOH C . E 4 HOH 54 263 263 HOH HOH C . E 4 HOH 55 266 266 HOH HOH C . E 4 HOH 56 271 271 HOH HOH C . E 4 HOH 57 272 272 HOH HOH C . E 4 HOH 58 275 275 HOH HOH C . E 4 HOH 59 277 277 HOH HOH C . E 4 HOH 60 279 279 HOH HOH C . E 4 HOH 61 285 285 HOH HOH C . E 4 HOH 62 286 286 HOH HOH C . E 4 HOH 63 288 288 HOH HOH C . E 4 HOH 64 292 292 HOH HOH C . E 4 HOH 65 294 294 HOH HOH C . E 4 HOH 66 295 295 HOH HOH C . E 4 HOH 67 296 296 HOH HOH C . E 4 HOH 68 297 297 HOH HOH C . E 4 HOH 69 298 298 HOH HOH C . F 4 HOH 1 19 19 HOH HOH D . F 4 HOH 2 20 20 HOH HOH D . F 4 HOH 3 21 21 HOH HOH D . F 4 HOH 4 22 22 HOH HOH D . F 4 HOH 5 23 23 HOH HOH D . F 4 HOH 6 24 24 HOH HOH D . F 4 HOH 7 25 25 HOH HOH D . F 4 HOH 8 26 26 HOH HOH D . F 4 HOH 9 27 27 HOH HOH D . F 4 HOH 10 28 28 HOH HOH D . F 4 HOH 11 29 29 HOH HOH D . F 4 HOH 12 30 30 HOH HOH D . F 4 HOH 13 31 31 HOH HOH D . F 4 HOH 14 32 32 HOH HOH D . F 4 HOH 15 33 33 HOH HOH D . F 4 HOH 16 34 34 HOH HOH D . F 4 HOH 17 35 35 HOH HOH D . F 4 HOH 18 36 36 HOH HOH D . F 4 HOH 19 37 37 HOH HOH D . F 4 HOH 20 39 39 HOH HOH D . F 4 HOH 21 40 40 HOH HOH D . F 4 HOH 22 41 41 HOH HOH D . F 4 HOH 23 42 42 HOH HOH D . F 4 HOH 24 54 54 HOH HOH D . F 4 HOH 25 57 57 HOH HOH D . F 4 HOH 26 80 80 HOH HOH D . F 4 HOH 27 83 83 HOH HOH D . F 4 HOH 28 94 94 HOH HOH D . F 4 HOH 29 97 97 HOH HOH D . F 4 HOH 30 100 100 HOH HOH D . F 4 HOH 31 102 102 HOH HOH D . F 4 HOH 32 109 109 HOH HOH D . F 4 HOH 33 118 118 HOH HOH D . F 4 HOH 34 125 125 HOH HOH D . F 4 HOH 35 126 126 HOH HOH D . F 4 HOH 36 128 128 HOH HOH D . F 4 HOH 37 135 135 HOH HOH D . F 4 HOH 38 136 136 HOH HOH D . F 4 HOH 39 137 137 HOH HOH D . F 4 HOH 40 138 138 HOH HOH D . F 4 HOH 41 141 141 HOH HOH D . F 4 HOH 42 154 154 HOH HOH D . F 4 HOH 43 155 155 HOH HOH D . F 4 HOH 44 158 158 HOH HOH D . F 4 HOH 45 159 159 HOH HOH D . F 4 HOH 46 167 167 HOH HOH D . F 4 HOH 47 177 177 HOH HOH D . F 4 HOH 48 178 178 HOH HOH D . F 4 HOH 49 179 179 HOH HOH D . F 4 HOH 50 180 180 HOH HOH D . F 4 HOH 51 181 181 HOH HOH D . F 4 HOH 52 183 183 HOH HOH D . F 4 HOH 53 189 189 HOH HOH D . F 4 HOH 54 191 191 HOH HOH D . F 4 HOH 55 192 192 HOH HOH D . F 4 HOH 56 200 200 HOH HOH D . F 4 HOH 57 201 201 HOH HOH D . F 4 HOH 58 203 203 HOH HOH D . F 4 HOH 59 206 206 HOH HOH D . F 4 HOH 60 207 207 HOH HOH D . F 4 HOH 61 208 208 HOH HOH D . F 4 HOH 62 209 209 HOH HOH D . F 4 HOH 63 218 218 HOH HOH D . F 4 HOH 64 220 220 HOH HOH D . F 4 HOH 65 224 224 HOH HOH D . F 4 HOH 66 240 240 HOH HOH D . F 4 HOH 67 250 250 HOH HOH D . F 4 HOH 68 256 256 HOH HOH D . F 4 HOH 69 257 257 HOH HOH D . F 4 HOH 70 260 260 HOH HOH D . F 4 HOH 71 265 265 HOH HOH D . F 4 HOH 72 268 268 HOH HOH D . F 4 HOH 73 274 274 HOH HOH D . F 4 HOH 74 276 276 HOH HOH D . F 4 HOH 75 284 284 HOH HOH D . F 4 HOH 76 287 287 HOH HOH D . G 4 HOH 1 43 43 HOH HOH A . G 4 HOH 2 44 44 HOH HOH A . G 4 HOH 3 45 45 HOH HOH A . G 4 HOH 4 46 46 HOH HOH A . G 4 HOH 5 47 47 HOH HOH A . G 4 HOH 6 48 48 HOH HOH A . G 4 HOH 7 49 49 HOH HOH A . G 4 HOH 8 50 50 HOH HOH A . G 4 HOH 9 51 51 HOH HOH A . G 4 HOH 10 52 52 HOH HOH A . G 4 HOH 11 53 53 HOH HOH A . G 4 HOH 12 55 55 HOH HOH A . G 4 HOH 13 56 56 HOH HOH A . G 4 HOH 14 81 81 HOH HOH A . G 4 HOH 15 82 82 HOH HOH A . G 4 HOH 16 85 85 HOH HOH A . G 4 HOH 17 86 86 HOH HOH A . G 4 HOH 18 89 89 HOH HOH A . G 4 HOH 19 90 90 HOH HOH A . G 4 HOH 20 92 92 HOH HOH A . G 4 HOH 21 95 95 HOH HOH A . G 4 HOH 22 98 98 HOH HOH A . G 4 HOH 23 99 99 HOH HOH A . G 4 HOH 24 101 101 HOH HOH A . G 4 HOH 25 103 103 HOH HOH A . G 4 HOH 26 107 107 HOH HOH A . G 4 HOH 27 113 113 HOH HOH A . G 4 HOH 28 115 115 HOH HOH A . G 4 HOH 29 120 120 HOH HOH A . G 4 HOH 30 122 122 HOH HOH A . G 4 HOH 31 123 123 HOH HOH A . G 4 HOH 32 139 139 HOH HOH A . G 4 HOH 33 140 140 HOH HOH A . G 4 HOH 34 142 142 HOH HOH A . G 4 HOH 35 143 143 HOH HOH A . G 4 HOH 36 144 144 HOH HOH A . G 4 HOH 37 145 145 HOH HOH A . G 4 HOH 38 146 146 HOH HOH A . G 4 HOH 39 147 147 HOH HOH A . G 4 HOH 40 148 148 HOH HOH A . G 4 HOH 41 156 156 HOH HOH A . G 4 HOH 42 157 157 HOH HOH A . G 4 HOH 43 163 163 HOH HOH A . G 4 HOH 44 171 171 HOH HOH A . G 4 HOH 45 172 172 HOH HOH A . G 4 HOH 46 173 173 HOH HOH A . G 4 HOH 47 174 174 HOH HOH A . G 4 HOH 48 175 175 HOH HOH A . G 4 HOH 49 182 182 HOH HOH A . G 4 HOH 50 194 194 HOH HOH A . G 4 HOH 51 195 195 HOH HOH A . G 4 HOH 52 204 204 HOH HOH A . G 4 HOH 53 205 205 HOH HOH A . G 4 HOH 54 214 214 HOH HOH A . G 4 HOH 55 215 215 HOH HOH A . G 4 HOH 56 216 216 HOH HOH A . G 4 HOH 57 222 222 HOH HOH A . G 4 HOH 58 225 225 HOH HOH A . G 4 HOH 59 226 226 HOH HOH A . G 4 HOH 60 227 227 HOH HOH A . G 4 HOH 61 236 236 HOH HOH A . G 4 HOH 62 238 238 HOH HOH A . G 4 HOH 63 241 241 HOH HOH A . G 4 HOH 64 242 242 HOH HOH A . G 4 HOH 65 251 251 HOH HOH A . G 4 HOH 66 253 253 HOH HOH A . G 4 HOH 67 254 254 HOH HOH A . G 4 HOH 68 264 264 HOH HOH A . G 4 HOH 69 269 269 HOH HOH A . G 4 HOH 70 281 281 HOH HOH A . G 4 HOH 71 289 289 HOH HOH A . G 4 HOH 72 290 290 HOH HOH A . G 4 HOH 73 293 293 HOH HOH A . H 4 HOH 1 14 14 HOH HOH B . H 4 HOH 2 58 58 HOH HOH B . H 4 HOH 3 59 59 HOH HOH B . H 4 HOH 4 60 60 HOH HOH B . H 4 HOH 5 61 61 HOH HOH B . H 4 HOH 6 62 62 HOH HOH B . H 4 HOH 7 63 63 HOH HOH B . H 4 HOH 8 64 64 HOH HOH B . H 4 HOH 9 65 65 HOH HOH B . H 4 HOH 10 66 66 HOH HOH B . H 4 HOH 11 67 67 HOH HOH B . H 4 HOH 12 68 68 HOH HOH B . H 4 HOH 13 69 69 HOH HOH B . H 4 HOH 14 70 70 HOH HOH B . H 4 HOH 15 71 71 HOH HOH B . H 4 HOH 16 72 72 HOH HOH B . H 4 HOH 17 73 73 HOH HOH B . H 4 HOH 18 74 74 HOH HOH B . H 4 HOH 19 75 75 HOH HOH B . H 4 HOH 20 76 76 HOH HOH B . H 4 HOH 21 77 77 HOH HOH B . H 4 HOH 22 78 78 HOH HOH B . H 4 HOH 23 79 79 HOH HOH B . H 4 HOH 24 87 87 HOH HOH B . H 4 HOH 25 88 88 HOH HOH B . H 4 HOH 26 91 91 HOH HOH B . H 4 HOH 27 93 93 HOH HOH B . H 4 HOH 28 96 96 HOH HOH B . H 4 HOH 29 104 104 HOH HOH B . H 4 HOH 30 105 105 HOH HOH B . H 4 HOH 31 106 106 HOH HOH B . H 4 HOH 32 108 108 HOH HOH B . H 4 HOH 33 112 112 HOH HOH B . H 4 HOH 34 116 116 HOH HOH B . H 4 HOH 35 121 121 HOH HOH B . H 4 HOH 36 130 130 HOH HOH B . H 4 HOH 37 149 149 HOH HOH B . H 4 HOH 38 152 152 HOH HOH B . H 4 HOH 39 153 153 HOH HOH B . H 4 HOH 40 160 160 HOH HOH B . H 4 HOH 41 168 168 HOH HOH B . H 4 HOH 42 169 169 HOH HOH B . H 4 HOH 43 170 170 HOH HOH B . H 4 HOH 44 185 185 HOH HOH B . H 4 HOH 45 186 186 HOH HOH B . H 4 HOH 46 187 187 HOH HOH B . H 4 HOH 47 188 188 HOH HOH B . H 4 HOH 48 193 193 HOH HOH B . H 4 HOH 49 196 196 HOH HOH B . H 4 HOH 50 199 199 HOH HOH B . H 4 HOH 51 210 210 HOH HOH B . H 4 HOH 52 211 211 HOH HOH B . H 4 HOH 53 213 213 HOH HOH B . H 4 HOH 54 219 219 HOH HOH B . H 4 HOH 55 221 221 HOH HOH B . H 4 HOH 56 223 223 HOH HOH B . H 4 HOH 57 228 228 HOH HOH B . H 4 HOH 58 229 229 HOH HOH B . H 4 HOH 59 230 230 HOH HOH B . H 4 HOH 60 231 231 HOH HOH B . H 4 HOH 61 233 233 HOH HOH B . H 4 HOH 62 235 235 HOH HOH B . H 4 HOH 63 243 243 HOH HOH B . H 4 HOH 64 244 244 HOH HOH B . H 4 HOH 65 245 245 HOH HOH B . H 4 HOH 66 246 246 HOH HOH B . H 4 HOH 67 247 247 HOH HOH B . H 4 HOH 68 248 248 HOH HOH B . H 4 HOH 69 249 249 HOH HOH B . H 4 HOH 70 252 252 HOH HOH B . H 4 HOH 71 255 255 HOH HOH B . H 4 HOH 72 262 262 HOH HOH B . H 4 HOH 73 267 267 HOH HOH B . H 4 HOH 74 270 270 HOH HOH B . H 4 HOH 75 273 273 HOH HOH B . H 4 HOH 76 278 278 HOH HOH B . H 4 HOH 77 280 280 HOH HOH B . H 4 HOH 78 282 282 HOH HOH B . H 4 HOH 79 283 283 HOH HOH B . H 4 HOH 80 291 291 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 REFMAC refinement 5.5.0109 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _cell.entry_id 3SJM _cell.length_a 44.073 _cell.length_b 47.454 _cell.length_c 108.172 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SJM _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3SJM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 43.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '50 mM HEPES, pH 7.5, 1 mM spermine, 2 M ammonium sulfate and 40 mM Mg(OAc)2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2011-02-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3SJM _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.35 _reflns.number_obs 48737 _reflns.number_all ? _reflns.percent_possible_obs 96.200 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.800 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3SJM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 46231 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.67 _refine.ls_d_res_high 1.35 _refine.ls_percent_reflns_obs 96.22 _refine.ls_R_factor_obs 0.17399 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17215 _refine.ls_R_factor_R_free 0.20810 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2429 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.955 _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.061 _refine.pdbx_overall_ESU_R_Free 0.059 _refine.overall_SU_ML 0.044 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 922 _refine_hist.pdbx_number_atoms_nucleic_acid 697 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 298 _refine_hist.number_atoms_total 1917 _refine_hist.d_res_high 1.35 _refine_hist.d_res_low 35.67 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.024 0.021 ? 1746 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.623 2.436 ? 2507 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.742 5.000 ? 116 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.057 23.333 ? 45 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.462 15.000 ? 183 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.065 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.020 0.020 ? 1089 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.351 _refine_ls_shell.d_res_low 1.386 _refine_ls_shell.number_reflns_R_work 2591 _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.percent_reflns_obs 73.78 _refine_ls_shell.R_factor_R_free 0.279 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 127 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3SJM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3SJM _struct.title 'Crystal Structure Analysis of TRF2-Dbd-DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SJM _struct_keywords.pdbx_keywords 'DNA/DNA binding protein' _struct_keywords.text ;Human Telomeric Repeat Binding Protein 2, telomere, telomeric repeat, Homeodomain Proteins amino acid sequence, nucleic acid, DNA-DNA binding protein complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TERF2_HUMAN Q15554 3 TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 441 ? 2 PDB 3SJM 3SJM 1 ? ? ? 3 PDB 3SJM 3SJM 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3SJM A 5 ? 64 ? Q15554 441 ? 500 ? 441 500 2 1 3SJM B 5 ? 64 ? Q15554 441 ? 500 ? 441 500 3 2 3SJM C 1 ? 18 ? 3SJM 1 ? 18 ? 1 18 4 3 3SJM D 1 ? 18 ? 3SJM 1 ? 18 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SJM GLY A 1 ? UNP Q15554 ? ? 'expression tag' 437 1 1 3SJM SER A 2 ? UNP Q15554 ? ? 'expression tag' 438 2 1 3SJM HIS A 3 ? UNP Q15554 ? ? 'expression tag' 439 3 1 3SJM MET A 4 ? UNP Q15554 ? ? 'expression tag' 440 4 2 3SJM GLY B 1 ? UNP Q15554 ? ? 'expression tag' 437 5 2 3SJM SER B 2 ? UNP Q15554 ? ? 'expression tag' 438 6 2 3SJM HIS B 3 ? UNP Q15554 ? ? 'expression tag' 439 7 2 3SJM MET B 4 ? UNP Q15554 ? ? 'expression tag' 440 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4990 ? 1 MORE -28 ? 1 'SSA (A^2)' 10950 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 15 ? GLY C 30 ? THR A 451 GLY A 466 1 ? 16 HELX_P HELX_P2 2 ASN C 33 ? TYR C 41 ? ASN A 469 TYR A 477 1 ? 9 HELX_P HELX_P3 3 THR C 47 ? LEU C 61 ? THR A 483 LEU A 497 1 ? 15 HELX_P HELX_P4 4 THR D 15 ? GLY D 30 ? THR B 451 GLY B 466 1 ? 16 HELX_P HELX_P5 5 ASN D 33 ? TYR D 41 ? ASN B 469 TYR B 477 1 ? 9 HELX_P HELX_P6 6 THR D 47 ? LEU D 61 ? THR B 483 LEU B 497 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 A ? ? 1_555 B DA 18 N1 ? ? C DT 2 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 A ? ? 1_555 B DA 18 N6 ? ? C DT 2 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 3 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 3 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 3 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 16 N1 ? ? C DT 4 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 16 N6 ? ? C DT 4 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 5 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 5 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 14 N3 ? ? C DG 6 D DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 14 O2 ? ? C DG 6 D DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 14 N4 ? ? C DG 6 D DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 7 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 7 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 7 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 12 N3 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 12 O2 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 12 N4 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 11 N1 ? ? C DT 9 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 11 N6 ? ? C DT 9 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 10 N1 ? ? C DT 10 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 10 N6 ? ? C DT 10 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 9 N3 ? ? C DA 11 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 9 O4 ? ? C DA 11 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 8 N3 ? ? C DG 12 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 8 O2 ? ? C DG 12 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 8 N4 ? ? C DG 12 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 7 N3 ? ? C DG 13 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 7 O2 ? ? C DG 13 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 7 N4 ? ? C DG 13 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 6 N3 ? ? C DG 14 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 6 O2 ? ? C DG 14 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 6 N4 ? ? C DG 14 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 5 N1 ? ? C DT 15 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 5 N6 ? ? C DT 15 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 4 N1 ? ? C DT 16 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 4 N6 ? ? C DT 16 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 3 N3 ? ? C DA 17 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 3 O4 ? ? C DA 17 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 18 N1 ? ? ? 1_555 B DC 2 N3 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 18 N2 ? ? ? 1_555 B DC 2 O2 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 18 O6 ? ? ? 1_555 B DC 2 N4 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 C7 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 DT _pdbx_validate_close_contact.auth_seq_id_1 2 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 C2 _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 DA _pdbx_validate_close_contact.auth_seq_id_2 18 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" C DT 2 ? ? "C3'" C DT 2 ? ? 1.379 1.419 -0.040 0.006 N 2 1 C2 C DT 2 ? B N3 C DT 2 ? B 1.324 1.373 -0.049 0.008 N 3 1 C5 C DT 2 ? A C7 C DT 2 ? A 1.593 1.496 0.097 0.006 N 4 1 "O3'" C DC 3 ? ? "C3'" C DC 3 ? ? 1.358 1.419 -0.061 0.006 N 5 1 C5 C DT 4 ? ? C7 C DT 4 ? ? 1.535 1.496 0.039 0.006 N 6 1 C5 C DA 5 ? ? N7 C DA 5 ? ? 1.424 1.388 0.036 0.006 N 7 1 N1 C DG 7 ? ? C2 C DG 7 ? ? 1.431 1.373 0.058 0.008 N 8 1 "O3'" C DG 8 ? ? "C3'" C DG 8 ? ? 1.367 1.419 -0.052 0.006 N 9 1 C5 C DT 10 ? ? C7 C DT 10 ? ? 1.535 1.496 0.039 0.006 N 10 1 C4 C DA 11 ? ? C5 C DA 11 ? ? 1.329 1.383 -0.054 0.007 N 11 1 N7 C DG 13 ? ? C8 C DG 13 ? ? 1.348 1.305 0.043 0.006 N 12 1 N3 C DA 17 ? ? C4 C DA 17 ? ? 1.382 1.344 0.038 0.006 N 13 1 "O3'" C DG 18 ? ? "C3'" C DG 18 ? ? 1.556 1.435 0.121 0.013 N 14 1 C5 D DT 3 ? ? C7 D DT 3 ? ? 1.549 1.496 0.053 0.006 N 15 1 C5 D DC 8 ? ? C6 D DC 8 ? ? 1.395 1.339 0.056 0.008 N 16 1 N7 D DA 11 ? ? C8 D DA 11 ? ? 1.354 1.311 0.043 0.007 N 17 1 N9 D DA 11 ? ? C4 D DA 11 ? ? 1.436 1.374 0.062 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C DT 2 ? ? "C2'" C DT 2 ? ? "C1'" C DT 2 ? ? 97.22 102.40 -5.18 0.80 N 2 1 "O4'" C DT 2 ? ? "C1'" C DT 2 ? ? "C2'" C DT 2 ? ? 109.91 106.80 3.11 0.50 N 3 1 N1 C DT 2 ? A "C1'" C DT 2 ? ? "C2'" C DT 2 ? ? 125.57 114.30 11.27 1.40 N 4 1 N1 C DT 2 ? B "C1'" C DT 2 ? ? "C2'" C DT 2 ? ? 101.17 112.60 -11.43 1.90 N 5 1 "O4'" C DT 2 ? ? "C1'" C DT 2 ? ? N1 C DT 2 ? A 69.07 108.00 -38.93 0.70 N 6 1 "O4'" C DT 2 ? ? "C1'" C DT 2 ? ? N1 C DT 2 ? B 131.39 108.30 23.09 0.30 N 7 1 C4 C DT 2 ? B C5 C DT 2 ? B C6 C DT 2 ? B 122.02 118.00 4.02 0.60 N 8 1 C5 C DT 2 ? B C6 C DT 2 ? B N1 C DT 2 ? B 117.36 123.70 -6.34 0.60 N 9 1 N1 C DT 2 ? B C2 C DT 2 ? B O2 C DT 2 ? B 117.45 123.10 -5.65 0.80 N 10 1 N3 C DT 2 ? A C4 C DT 2 ? A O4 C DT 2 ? A 124.28 119.90 4.38 0.60 N 11 1 N3 C DT 2 ? B C4 C DT 2 ? B O4 C DT 2 ? B 115.50 119.90 -4.40 0.60 N 12 1 C5 C DT 2 ? A C4 C DT 2 ? A O4 C DT 2 ? A 120.20 124.90 -4.70 0.70 N 13 1 C5 C DT 2 ? B C4 C DT 2 ? B O4 C DT 2 ? B 129.39 124.90 4.49 0.70 N 14 1 C6 C DT 2 ? A C5 C DT 2 ? A C7 C DT 2 ? A 119.23 122.90 -3.67 0.60 N 15 1 C6 C DT 2 ? B N1 C DT 2 ? B "C1'" C DT 2 ? ? 137.10 120.40 16.70 1.50 N 16 1 C2 C DT 2 ? B N1 C DT 2 ? B "C1'" C DT 2 ? ? 98.84 118.20 -19.36 1.60 N 17 1 "C5'" C DC 3 ? ? "C4'" C DC 3 ? ? "O4'" C DC 3 ? ? 118.27 109.80 8.47 1.10 N 18 1 "O4'" C DC 3 ? ? "C1'" C DC 3 ? ? N1 C DC 3 ? ? 103.00 108.00 -5.00 0.70 N 19 1 N1 C DC 3 ? ? C2 C DC 3 ? ? O2 C DC 3 ? ? 124.96 118.90 6.06 0.60 N 20 1 N3 C DC 3 ? ? C2 C DC 3 ? ? O2 C DC 3 ? ? 116.20 121.90 -5.70 0.70 N 21 1 C4 C DT 4 ? ? C5 C DT 4 ? ? C7 C DT 4 ? ? 123.96 119.00 4.96 0.60 N 22 1 C6 C DT 4 ? ? C5 C DT 4 ? ? C7 C DT 4 ? ? 119.12 122.90 -3.78 0.60 N 23 1 "O5'" C DA 5 ? ? "C5'" C DA 5 ? ? "C4'" C DA 5 ? ? 103.92 109.40 -5.48 0.80 N 24 1 "O4'" C DA 5 ? ? "C1'" C DA 5 ? ? N9 C DA 5 ? ? 101.20 108.00 -6.80 0.70 N 25 1 "O4'" C DG 6 ? ? "C1'" C DG 6 ? ? N9 C DG 6 ? ? 111.18 108.30 2.88 0.30 N 26 1 C6 C DG 6 ? ? N1 C DG 6 ? ? C2 C DG 6 ? ? 119.40 125.10 -5.70 0.60 N 27 1 N1 C DG 6 ? ? C2 C DG 6 ? ? N3 C DG 6 ? ? 128.07 123.90 4.17 0.60 N 28 1 C8 C DG 7 ? ? N9 C DG 7 ? ? C4 C DG 7 ? ? 109.42 106.40 3.02 0.40 N 29 1 C6 C DT 9 ? ? C5 C DT 9 ? ? C7 C DT 9 ? ? 126.91 122.90 4.01 0.60 N 30 1 "O4'" C DT 10 ? ? "C1'" C DT 10 ? ? N1 C DT 10 ? ? 103.73 108.00 -4.27 0.70 N 31 1 C6 C DA 11 ? ? N1 C DA 11 ? ? C2 C DA 11 ? ? 123.76 118.60 5.16 0.60 N 32 1 N1 C DA 11 ? ? C2 C DA 11 ? ? N3 C DA 11 ? ? 123.75 129.30 -5.55 0.50 N 33 1 C4 C DA 11 ? ? C5 C DA 11 ? ? C6 C DA 11 ? ? 120.35 117.00 3.35 0.50 N 34 1 C5 C DA 11 ? ? C6 C DA 11 ? ? N1 C DA 11 ? ? 112.41 117.70 -5.29 0.50 N 35 1 "C3'" C DG 12 ? ? "C2'" C DG 12 ? ? "C1'" C DG 12 ? ? 96.25 102.40 -6.15 0.80 N 36 1 "O4'" C DG 12 ? ? "C1'" C DG 12 ? ? N9 C DG 12 ? ? 112.47 108.30 4.17 0.30 N 37 1 C4 C DG 12 ? ? C5 C DG 12 ? ? N7 C DG 12 ? ? 106.66 110.80 -4.14 0.40 N 38 1 C5 C DG 12 ? ? N7 C DG 12 ? ? C8 C DG 12 ? ? 110.07 104.30 5.77 0.50 N 39 1 N9 C DG 12 ? ? C4 C DG 12 ? ? C5 C DG 12 ? ? 108.32 105.40 2.92 0.40 N 40 1 N1 C DG 13 ? ? C2 C DG 13 ? ? N3 C DG 13 ? ? 120.30 123.90 -3.60 0.60 N 41 1 C2 C DG 13 ? ? N3 C DG 13 ? ? C4 C DG 13 ? ? 116.08 111.90 4.18 0.50 N 42 1 C8 C DG 13 ? ? N9 C DG 13 ? ? C4 C DG 13 ? ? 109.54 106.40 3.14 0.40 N 43 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? "C2'" C DG 14 ? ? 100.38 105.90 -5.52 0.80 N 44 1 C2 C DG 14 ? ? N3 C DG 14 ? ? C4 C DG 14 ? ? 115.01 111.90 3.11 0.50 N 45 1 C8 C DG 14 ? ? N9 C DG 14 ? ? C4 C DG 14 ? ? 109.00 106.40 2.60 0.40 N 46 1 "O5'" C DT 16 ? ? "C5'" C DT 16 ? ? "C4'" C DT 16 ? ? 103.94 109.40 -5.46 0.80 N 47 1 "O4'" C DT 16 ? ? "C1'" C DT 16 ? ? N1 C DT 16 ? ? 101.21 108.00 -6.79 0.70 N 48 1 OP1 C DG 18 ? ? P C DG 18 ? ? OP2 C DG 18 ? ? 136.50 119.60 16.90 1.50 N 49 1 "O5'" C DG 18 ? ? P C DG 18 ? ? OP1 C DG 18 ? ? 92.17 105.70 -13.53 0.90 N 50 1 "C1'" C DG 18 ? ? "O4'" C DG 18 ? ? "C4'" C DG 18 ? ? 103.79 110.10 -6.31 1.00 N 51 1 N1 C DG 18 ? ? C6 C DG 18 ? ? O6 C DG 18 ? ? 116.01 119.90 -3.89 0.60 N 52 1 N3 D DC 2 ? ? C4 D DC 2 ? ? N4 D DC 2 ? ? 122.79 118.00 4.79 0.70 N 53 1 C5 D DC 2 ? ? C4 D DC 2 ? ? N4 D DC 2 ? ? 115.70 120.20 -4.50 0.70 N 54 1 "O5'" D DT 3 ? ? P D DT 3 ? ? OP2 D DT 3 ? ? 95.85 105.70 -9.85 0.90 N 55 1 "O4'" D DT 3 ? ? "C4'" D DT 3 ? ? "C3'" D DT 3 ? ? 100.37 104.50 -4.13 0.40 N 56 1 "C3'" D DT 3 ? ? "C2'" D DT 3 ? ? "C1'" D DT 3 ? ? 95.00 102.40 -7.40 0.80 N 57 1 C6 D DT 3 ? ? N1 D DT 3 ? ? C2 D DT 3 ? ? 124.63 121.30 3.33 0.50 N 58 1 N3 D DT 3 ? ? C4 D DT 3 ? ? C5 D DT 3 ? ? 118.85 115.20 3.65 0.60 N 59 1 C5 D DT 3 ? ? C6 D DT 3 ? ? N1 D DT 3 ? ? 119.77 123.70 -3.93 0.60 N 60 1 C5 D DT 3 ? ? C4 D DT 3 ? ? O4 D DT 3 ? ? 119.96 124.90 -4.94 0.70 N 61 1 "C1'" D DA 4 ? ? "O4'" D DA 4 ? ? "C4'" D DA 4 ? ? 115.10 110.30 4.80 0.70 N 62 1 C6 D DA 4 ? ? N1 D DA 4 ? ? C2 D DA 4 ? ? 123.81 118.60 5.21 0.60 N 63 1 N1 D DA 4 ? ? C2 D DA 4 ? ? N3 D DA 4 ? ? 123.73 129.30 -5.57 0.50 N 64 1 C2 D DA 4 ? ? N3 D DA 4 ? ? C4 D DA 4 ? ? 113.92 110.60 3.32 0.50 N 65 1 C4 D DA 5 ? ? C5 D DA 5 ? ? C6 D DA 5 ? ? 113.83 117.00 -3.17 0.50 N 66 1 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? "C2'" D DC 6 ? ? 100.81 105.90 -5.09 0.80 N 67 1 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 110.42 108.30 2.12 0.30 N 68 1 C6 D DC 7 ? ? N1 D DC 7 ? ? C2 D DC 7 ? ? 124.34 120.30 4.04 0.40 N 69 1 N1 D DC 7 ? ? C2 D DC 7 ? ? N3 D DC 7 ? ? 114.12 119.20 -5.08 0.70 N 70 1 C2 D DC 7 ? ? N3 D DC 7 ? ? C4 D DC 7 ? ? 123.03 119.90 3.13 0.50 N 71 1 "O4'" D DC 8 ? ? "C1'" D DC 8 ? ? N1 D DC 8 ? ? 100.86 108.00 -7.14 0.70 N 72 1 C6 D DC 8 ? ? N1 D DC 8 ? ? C2 D DC 8 ? ? 116.54 120.30 -3.76 0.40 N 73 1 C4 D DC 8 ? ? C5 D DC 8 ? ? C6 D DC 8 ? ? 110.85 117.40 -6.55 0.50 N 74 1 C5 D DC 8 ? ? C6 D DC 8 ? ? N1 D DC 8 ? ? 126.70 121.00 5.70 0.50 N 75 1 C6 D DT 9 ? ? N1 D DT 9 ? ? C2 D DT 9 ? ? 124.74 121.30 3.44 0.50 N 76 1 C5 D DT 9 ? ? C6 D DT 9 ? ? N1 D DT 9 ? ? 119.20 123.70 -4.50 0.60 N 77 1 C6 D DA 11 ? ? N1 D DA 11 ? ? C2 D DA 11 ? ? 123.02 118.60 4.42 0.60 N 78 1 N1 D DA 11 ? ? C2 D DA 11 ? ? N3 D DA 11 ? ? 125.75 129.30 -3.55 0.50 N 79 1 C2 D DA 11 ? ? N3 D DA 11 ? ? C4 D DA 11 ? ? 113.77 110.60 3.17 0.50 N 80 1 C4 D DA 11 ? ? C5 D DA 11 ? ? N7 D DA 11 ? ? 107.09 110.70 -3.61 0.50 N 81 1 "O4'" D DC 12 ? ? "C1'" D DC 12 ? ? N1 D DC 12 ? ? 111.05 108.30 2.75 0.30 N 82 1 N3 D DC 12 ? ? C4 D DC 12 ? ? C5 D DC 12 ? ? 118.23 121.90 -3.67 0.40 N 83 1 C4 D DC 12 ? ? C5 D DC 12 ? ? C6 D DC 12 ? ? 120.78 117.40 3.38 0.50 N 84 1 "C3'" D DC 12 ? ? "O3'" D DC 12 ? ? P D DC 13 ? ? 127.64 119.70 7.94 1.20 Y 85 1 "O4'" D DC 13 ? ? "C1'" D DC 13 ? ? N1 D DC 13 ? ? 103.47 108.00 -4.53 0.70 N 86 1 C6 D DC 14 ? ? N1 D DC 14 ? ? C2 D DC 14 ? ? 124.70 120.30 4.40 0.40 N 87 1 C5 D DC 14 ? ? C6 D DC 14 ? ? N1 D DC 14 ? ? 116.44 121.00 -4.56 0.50 N 88 1 "O4'" D DT 15 ? ? "C1'" D DT 15 ? ? "C2'" D DT 15 ? ? 99.96 105.90 -5.94 0.80 N 89 1 "O4'" D DT 15 ? ? "C1'" D DT 15 ? ? N1 D DT 15 ? ? 110.40 108.30 2.10 0.30 N 90 1 C5 D DT 15 ? ? C6 D DT 15 ? ? N1 D DT 15 ? ? 118.68 123.70 -5.02 0.60 N 91 1 C5 D DA 16 ? ? N7 D DA 16 ? ? C8 D DA 16 ? ? 107.16 103.90 3.26 0.50 N 92 1 C8 D DA 16 ? ? N9 D DA 16 ? ? C4 D DA 16 ? ? 108.82 105.80 3.02 0.40 N 93 1 N9 D DA 16 ? ? C4 D DA 16 ? ? C5 D DA 16 ? ? 102.82 105.80 -2.98 0.40 N 94 1 "C3'" D DG 17 ? ? "C2'" D DG 17 ? ? "C1'" D DG 17 ? ? 95.38 102.40 -7.02 0.80 N 95 1 "O4'" D DG 17 ? ? "C1'" D DG 17 ? ? N9 D DG 17 ? ? 113.72 108.30 5.42 0.30 N 96 1 C4 D DG 17 ? ? C5 D DG 17 ? ? N7 D DG 17 ? ? 113.87 110.80 3.07 0.40 N 97 1 "O4'" D DA 18 ? ? "C1'" D DA 18 ? ? N9 D DA 18 ? ? 110.30 108.30 2.00 0.30 N # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 C _pdbx_validate_polymer_linkage.auth_comp_id_1 DT _pdbx_validate_polymer_linkage.auth_seq_id_1 2 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 C _pdbx_validate_polymer_linkage.auth_comp_id_2 DC _pdbx_validate_polymer_linkage.auth_seq_id_2 3 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 2.42 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C DC 1 ? A DC 1 2 1 Y 1 D DT 1 ? B DT 1 3 1 Y 1 A GLY 437 ? C GLY 1 4 1 Y 1 A SER 438 ? C SER 2 5 1 Y 1 A HIS 439 ? C HIS 3 6 1 Y 1 A MET 440 ? C MET 4 7 1 Y 1 A THR 441 ? C THR 5 8 1 Y 1 A THR 442 ? C THR 6 9 1 Y 1 A ASN 443 ? C ASN 7 10 1 Y 1 A ILE 444 ? C ILE 8 11 1 Y 1 A THR 445 ? C THR 9 12 1 Y 1 B GLY 437 ? D GLY 1 13 1 Y 1 B SER 438 ? D SER 2 14 1 Y 1 B HIS 439 ? D HIS 3 15 1 Y 1 B MET 440 ? D MET 4 16 1 Y 1 B THR 441 ? D THR 5 17 1 Y 1 B THR 442 ? D THR 6 18 1 Y 1 B ASN 443 ? D ASN 7 19 1 Y 1 B ILE 444 ? D ILE 8 20 1 Y 1 B THR 445 ? D THR 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 THR N N N N 433 THR CA C N S 434 THR C C N N 435 THR O O N N 436 THR CB C N R 437 THR OG1 O N N 438 THR CG2 C N N 439 THR OXT O N N 440 THR H H N N 441 THR H2 H N N 442 THR HA H N N 443 THR HB H N N 444 THR HG1 H N N 445 THR HG21 H N N 446 THR HG22 H N N 447 THR HG23 H N N 448 THR HXT H N N 449 TRP N N N N 450 TRP CA C N S 451 TRP C C N N 452 TRP O O N N 453 TRP CB C N N 454 TRP CG C Y N 455 TRP CD1 C Y N 456 TRP CD2 C Y N 457 TRP NE1 N Y N 458 TRP CE2 C Y N 459 TRP CE3 C Y N 460 TRP CZ2 C Y N 461 TRP CZ3 C Y N 462 TRP CH2 C Y N 463 TRP OXT O N N 464 TRP H H N N 465 TRP H2 H N N 466 TRP HA H N N 467 TRP HB2 H N N 468 TRP HB3 H N N 469 TRP HD1 H N N 470 TRP HE1 H N N 471 TRP HE3 H N N 472 TRP HZ2 H N N 473 TRP HZ3 H N N 474 TRP HH2 H N N 475 TRP HXT H N N 476 TYR N N N N 477 TYR CA C N S 478 TYR C C N N 479 TYR O O N N 480 TYR CB C N N 481 TYR CG C Y N 482 TYR CD1 C Y N 483 TYR CD2 C Y N 484 TYR CE1 C Y N 485 TYR CE2 C Y N 486 TYR CZ C Y N 487 TYR OH O N N 488 TYR OXT O N N 489 TYR H H N N 490 TYR H2 H N N 491 TYR HA H N N 492 TYR HB2 H N N 493 TYR HB3 H N N 494 TYR HD1 H N N 495 TYR HD2 H N N 496 TYR HE1 H N N 497 TYR HE2 H N N 498 TYR HH H N N 499 TYR HXT H N N 500 VAL N N N N 501 VAL CA C N S 502 VAL C C N N 503 VAL O O N N 504 VAL CB C N N 505 VAL CG1 C N N 506 VAL CG2 C N N 507 VAL OXT O N N 508 VAL H H N N 509 VAL H2 H N N 510 VAL HA H N N 511 VAL HB H N N 512 VAL HG11 H N N 513 VAL HG12 H N N 514 VAL HG13 H N N 515 VAL HG21 H N N 516 VAL HG22 H N N 517 VAL HG23 H N N 518 VAL HXT H N N 519 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 VAL N CA sing N N 494 VAL N H sing N N 495 VAL N H2 sing N N 496 VAL CA C sing N N 497 VAL CA CB sing N N 498 VAL CA HA sing N N 499 VAL C O doub N N 500 VAL C OXT sing N N 501 VAL CB CG1 sing N N 502 VAL CB CG2 sing N N 503 VAL CB HB sing N N 504 VAL CG1 HG11 sing N N 505 VAL CG1 HG12 sing N N 506 VAL CG1 HG13 sing N N 507 VAL CG2 HG21 sing N N 508 VAL CG2 HG22 sing N N 509 VAL CG2 HG23 sing N N 510 VAL OXT HXT sing N N 511 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3SJM 'double helix' 3SJM 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 18 1_555 0.351 0.012 -0.015 -32.179 27.203 -6.312 1 C_DT2:DA18_D C 2 ? D 18 ? 20 1 1 A DC 3 1_555 B DG 17 1_555 -0.133 -0.235 0.017 -11.485 -3.877 -7.753 2 C_DC3:DG17_D C 3 ? D 17 ? 19 1 1 A DT 4 1_555 B DA 16 1_555 -0.050 -0.073 0.161 -12.680 -10.565 -2.972 3 C_DT4:DA16_D C 4 ? D 16 ? 20 1 1 A DA 5 1_555 B DT 15 1_555 0.059 -0.121 -0.116 -5.455 0.149 4.842 4 C_DA5:DT15_D C 5 ? D 15 ? 20 1 1 A DG 6 1_555 B DC 14 1_555 -0.230 -0.096 0.224 10.632 2.427 0.569 5 C_DG6:DC14_D C 6 ? D 14 ? 19 1 1 A DG 7 1_555 B DC 13 1_555 -0.116 -0.117 0.246 13.480 -6.694 -0.796 6 C_DG7:DC13_D C 7 ? D 13 ? 19 1 1 A DG 8 1_555 B DC 12 1_555 -0.300 -0.111 -0.126 -1.578 -8.070 3.134 7 C_DG8:DC12_D C 8 ? D 12 ? 19 1 1 A DT 9 1_555 B DA 11 1_555 -0.139 -0.115 0.091 -4.049 -11.568 1.977 8 C_DT9:DA11_D C 9 ? D 11 ? 20 1 1 A DT 10 1_555 B DA 10 1_555 -0.153 -0.068 0.013 -8.269 -19.318 -1.649 9 C_DT10:DA10_D C 10 ? D 10 ? 20 1 1 A DA 11 1_555 B DT 9 1_555 0.113 -0.034 -0.169 -0.408 4.130 3.418 10 C_DA11:DT9_D C 11 ? D 9 ? 20 1 1 A DG 12 1_555 B DC 8 1_555 -0.282 -0.121 0.348 17.196 2.859 -0.702 11 C_DG12:DC8_D C 12 ? D 8 ? 19 1 1 A DG 13 1_555 B DC 7 1_555 -0.378 -0.207 0.187 11.544 -7.655 -1.921 12 C_DG13:DC7_D C 13 ? D 7 ? 19 1 1 A DG 14 1_555 B DC 6 1_555 -0.235 -0.068 -0.037 -3.490 -12.578 2.154 13 C_DG14:DC6_D C 14 ? D 6 ? 19 1 1 A DT 15 1_555 B DA 5 1_555 -0.144 -0.157 0.061 -5.765 -12.938 1.166 14 C_DT15:DA5_D C 15 ? D 5 ? 20 1 1 A DT 16 1_555 B DA 4 1_555 -0.203 -0.135 0.008 -13.156 -21.563 -2.266 15 C_DT16:DA4_D C 16 ? D 4 ? 20 1 1 A DA 17 1_555 B DT 3 1_555 0.114 -0.114 -0.259 -6.152 1.207 0.415 16 C_DA17:DT3_D C 17 ? D 3 ? 20 1 1 A DG 18 1_555 B DC 2 1_555 -0.231 -0.253 0.425 18.477 1.338 1.241 17 C_DG18:DC2_D C 18 ? D 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 18 1_555 A DC 3 1_555 B DG 17 1_555 -1.246 -0.455 3.349 4.127 -24.389 38.157 1.716 2.011 2.974 -33.381 -5.649 45.222 1 CC_DT2DC3:DG17DA18_DD C 2 ? D 18 ? C 3 ? D 17 ? 1 A DC 3 1_555 B DG 17 1_555 A DT 4 1_555 B DA 16 1_555 -0.502 0.229 3.429 -2.126 -1.566 30.665 0.753 0.510 3.439 -2.954 4.011 30.775 2 CC_DC3DT4:DA16DG17_DD C 3 ? D 17 ? C 4 ? D 16 ? 1 A DT 4 1_555 B DA 16 1_555 A DA 5 1_555 B DT 15 1_555 0.498 1.378 3.172 -0.231 -1.613 46.756 1.865 -0.646 3.123 -2.031 0.291 46.783 3 CC_DT4DA5:DT15DA16_DD C 4 ? D 16 ? C 5 ? D 15 ? 1 A DA 5 1_555 B DT 15 1_555 A DG 6 1_555 B DC 14 1_555 -0.172 0.064 2.967 -3.794 2.014 19.793 -0.656 -1.085 2.939 5.772 10.873 20.249 4 CC_DA5DG6:DC14DT15_DD C 5 ? D 15 ? C 6 ? D 14 ? 1 A DG 6 1_555 B DC 14 1_555 A DG 7 1_555 B DC 13 1_555 -0.115 0.224 3.294 0.702 1.854 39.595 0.112 0.252 3.298 2.735 -1.036 39.642 5 CC_DG6DG7:DC13DC14_DD C 6 ? D 14 ? C 7 ? D 13 ? 1 A DG 7 1_555 B DC 13 1_555 A DG 8 1_555 B DC 12 1_555 0.293 -0.854 3.619 1.244 3.036 38.095 -1.723 -0.275 3.551 4.641 -1.901 38.231 6 CC_DG7DG8:DC12DC13_DD C 7 ? D 13 ? C 8 ? D 12 ? 1 A DG 8 1_555 B DC 12 1_555 A DT 9 1_555 B DA 11 1_555 -0.609 -0.696 3.312 -0.761 -0.137 34.260 -1.159 0.912 3.327 -0.233 1.292 34.269 7 CC_DG8DT9:DA11DC12_DD C 8 ? D 12 ? C 9 ? D 11 ? 1 A DT 9 1_555 B DA 11 1_555 A DT 10 1_555 B DA 10 1_555 -0.561 -0.252 3.245 1.282 -3.260 38.221 0.020 1.012 3.235 -4.966 -1.953 38.375 8 CC_DT9DT10:DA10DA11_DD C 9 ? D 11 ? C 10 ? D 10 ? 1 A DT 10 1_555 B DA 10 1_555 A DA 11 1_555 B DT 9 1_555 0.448 1.503 3.150 -0.454 -3.873 46.679 2.194 -0.599 3.019 -4.878 0.572 46.832 9 CC_DT10DA11:DT9DA10_DD C 10 ? D 10 ? C 11 ? D 9 ? 1 A DA 11 1_555 B DT 9 1_555 A DG 12 1_555 B DC 8 1_555 -0.279 0.057 2.907 -4.679 -0.412 18.680 0.357 -1.284 2.887 -1.243 14.129 19.256 10 CC_DA11DG12:DC8DT9_DD C 11 ? D 9 ? C 12 ? D 8 ? 1 A DG 12 1_555 B DC 8 1_555 A DG 13 1_555 B DC 7 1_555 -0.203 -0.131 3.406 0.619 1.462 41.600 -0.345 0.353 3.396 2.057 -0.872 41.629 11 CC_DG12DG13:DC7DC8_DD C 12 ? D 8 ? C 13 ? D 7 ? 1 A DG 13 1_555 B DC 7 1_555 A DG 14 1_555 B DC 6 1_555 0.657 -0.960 3.670 1.785 2.181 36.431 -1.868 -0.773 3.636 3.483 -2.849 36.536 12 CC_DG13DG14:DC6DC7_DD C 13 ? D 7 ? C 14 ? D 6 ? 1 A DG 14 1_555 B DC 6 1_555 A DT 15 1_555 B DA 5 1_555 -0.592 -0.722 3.300 0.674 -0.283 34.452 -1.174 1.105 3.294 -0.478 -1.137 34.460 13 CC_DG14DT15:DA5DC6_DD C 14 ? D 6 ? C 15 ? D 5 ? 1 A DT 15 1_555 B DA 5 1_555 A DT 16 1_555 B DA 4 1_555 -0.515 0.028 3.310 1.175 -2.264 38.923 0.318 0.915 3.287 -3.393 -1.761 39.004 14 CC_DT15DT16:DA4DA5_DD C 15 ? D 5 ? C 16 ? D 4 ? 1 A DT 16 1_555 B DA 4 1_555 A DA 17 1_555 B DT 3 1_555 0.788 1.639 3.194 0.505 -6.271 45.514 2.613 -0.969 2.963 -8.060 -0.649 45.924 15 CC_DT16DA17:DT3DA4_DD C 16 ? D 4 ? C 17 ? D 3 ? 1 A DA 17 1_555 B DT 3 1_555 A DG 18 1_555 B DC 2 1_555 0.412 -0.642 2.781 -7.129 2.908 23.707 -2.204 -2.711 2.459 6.852 16.795 24.908 16 CC_DA17DG18:DC2DT3_DD C 17 ? D 3 ? C 18 ? D 2 ? # _atom_sites.entry_id 3SJM _atom_sites.fract_transf_matrix[1][1] 0.022690 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021073 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009245 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_