HEADER LYASE 21-JUN-11 3SJN TITLE CRYSTAL STRUCTURE OF ENOLASE SPEA_3858 (TARGET EFI-500646) FROM TITLE 2 SHEWANELLA PEALEANA WITH MAGNESIUM BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA PEALEANA; SOURCE 3 ORGANISM_TAXID: 398579; SOURCE 4 STRAIN: ATCC 700345 / ANG-SQ1; SOURCE 5 GENE: SPEA_3858; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOLASE, MAGNESIUM BINDING SITE, LYASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,J.KIM,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, AUTHOR 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 4 13-SEP-23 3SJN 1 REMARK SEQADV LINK REVDAT 3 22-FEB-12 3SJN 1 AUTHOR REMARK REVDAT 2 03-AUG-11 3SJN 1 VERSN AUTHOR REVDAT 1 06-JUL-11 3SJN 0 JRNL AUTH Y.PATSKOVSKY,J.KIM,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ENOLASE SPEA_3858 FROM SHEWANELLA JRNL TITL 2 PEALEANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -21.05000 REMARK 3 B22 (A**2) : -21.05000 REMARK 3 B33 (A**2) : 42.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.477 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6007 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8152 ; 1.249 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 5.656 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;37.191 ;24.908 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;15.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;11.757 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 904 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4560 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3739 ; 4.330 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6024 ; 5.994 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2268 ; 8.292 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2112 ;10.995 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.711 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.289 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76116 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MQT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 200MM MAGNESIUM CHLORIDE, REMARK 280 25% PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.60350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.60350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.51700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.60350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.60350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.51700 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.60350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.60350 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 70.51700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 54.60350 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.60350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 70.51700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 90250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -184.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -109.20700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -109.20700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -109.20700 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -109.20700 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 95 -48.38 76.91 REMARK 500 HIS A 204 -58.91 64.45 REMARK 500 THR A 255 152.87 80.23 REMARK 500 SER A 304 -86.76 -148.61 REMARK 500 ASN A 341 32.17 -99.36 REMARK 500 ARG B 95 -51.03 70.73 REMARK 500 ASP B 173 -71.81 -56.14 REMARK 500 HIS B 204 -43.51 66.80 REMARK 500 THR B 255 152.20 75.08 REMARK 500 SER B 304 -90.08 -149.99 REMARK 500 ASN B 341 32.00 -95.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 374 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 198 OD2 REMARK 620 2 GLU A 225 OE2 91.2 REMARK 620 3 GLU A 251 OE1 169.4 99.4 REMARK 620 4 HOH A 377 O 84.0 173.4 85.4 REMARK 620 5 HOH A 489 O 93.2 101.8 84.1 83.0 REMARK 620 6 HOH A 490 O 86.6 88.5 94.2 86.7 169.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 374 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 198 OD2 REMARK 620 2 GLU B 225 OE2 96.7 REMARK 620 3 GLU B 251 OE1 162.2 87.9 REMARK 620 4 HOH B 376 O 89.7 87.0 73.3 REMARK 620 5 HOH B 377 O 89.5 93.7 107.5 179.0 REMARK 620 6 HOH B 378 O 87.2 175.6 89.0 95.1 84.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 374 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-500646 RELATED DB: TARGETTRACK DBREF 3SJN A 2 373 UNP A8H9D1 A8H9D1_SHEPA 2 373 DBREF 3SJN B 2 373 UNP A8H9D1 A8H9D1_SHEPA 2 373 SEQADV 3SJN MET A 0 UNP A8H9D1 EXPRESSION TAG SEQADV 3SJN VAL A 1 UNP A8H9D1 EXPRESSION TAG SEQADV 3SJN MET B 0 UNP A8H9D1 EXPRESSION TAG SEQADV 3SJN VAL B 1 UNP A8H9D1 EXPRESSION TAG SEQRES 1 A 374 MET VAL LEU LYS ILE THR ASP ILE GLU VAL LEU HIS LEU SEQRES 2 A 374 ARG VAL PRO ALA MET ASP ALA ASP CYS GLU TRP GLY GLU SEQRES 3 A 374 ASP ALA VAL ILE VAL LYS VAL HIS THR ASP LYS GLY ILE SEQRES 4 A 374 VAL GLY VAL GLY GLU ALA ASP SER SER PRO LEU VAL VAL SEQRES 5 A 374 GLN ALA CYS ILE GLU ALA PRO GLN THR ASN PHE TYR CYS SEQRES 6 A 374 ASN GLY LEU LYS ARG LEU LEU ILE GLY GLU ASN ALA LEU SEQRES 7 A 374 GLU ILE GLU ARG LEU TRP ASN LYS MET TYR TRP GLY SER SEQRES 8 A 374 ASN TYR MET GLY ARG ARG GLY ALA GLY ILE HIS ALA ILE SEQRES 9 A 374 SER ALA ILE ASP ILE ALA LEU TRP ASP ILE ALA GLY GLN SEQRES 10 A 374 PHE TYR GLY VAL PRO VAL HIS THR LEU LEU GLY GLY LYS SEQRES 11 A 374 TYR ARG ASP LYS ILE ARG CYS TYR GLY THR PHE ILE PRO SEQRES 12 A 374 ALA ASP LYS PRO GLU ASP ASN VAL ALA ILE VAL GLN GLY SEQRES 13 A 374 LEU LYS ASP GLN GLY PHE SER SER ILE LYS PHE GLY GLY SEQRES 14 A 374 GLY VAL MET GLY ASP ASP PRO ASP THR ASP TYR ALA ILE SEQRES 15 A 374 VAL LYS ALA VAL ARG GLU ALA ALA GLY PRO GLU MET GLU SEQRES 16 A 374 VAL GLN ILE ASP LEU ALA SER LYS TRP HIS THR CYS GLY SEQRES 17 A 374 HIS SER ALA MET MET ALA LYS ARG LEU GLU GLU PHE ASN SEQRES 18 A 374 LEU ASN TRP ILE GLU GLU PRO VAL LEU ALA ASP SER LEU SEQRES 19 A 374 ILE SER TYR GLU LYS LEU SER ARG GLN VAL SER GLN LYS SEQRES 20 A 374 ILE ALA GLY GLY GLU SER LEU THR THR ARG TYR GLU PHE SEQRES 21 A 374 GLN GLU PHE ILE THR LYS SER ASN ALA ASP ILE VAL GLN SEQRES 22 A 374 PRO ASP ILE THR ARG CYS GLY GLY ILE THR GLU MET LYS SEQRES 23 A 374 LYS ILE TYR ASP ILE ALA GLN MET ASN GLY THR GLN LEU SEQRES 24 A 374 ILE PRO HIS GLY PHE SER THR GLY ILE LEU LEU HIS ALA SEQRES 25 A 374 SER VAL HIS PHE LEU ALA ALA CYS GLU GLN GLY THR LEU SEQRES 26 A 374 MET GLU PHE SER GLN SER SER SER PRO LEU PHE THR SER SEQRES 27 A 374 LEU VAL LYS ASN GLN LEU GLN PHE ASP ASN GLY PHE VAL SEQRES 28 A 374 ALA VAL SER ASP ALA PRO GLY LEU GLY ILE GLU LEU ASP SEQRES 29 A 374 GLU GLU LEU ILE ALA LYS TYR ARG VAL ASN SEQRES 1 B 374 MET VAL LEU LYS ILE THR ASP ILE GLU VAL LEU HIS LEU SEQRES 2 B 374 ARG VAL PRO ALA MET ASP ALA ASP CYS GLU TRP GLY GLU SEQRES 3 B 374 ASP ALA VAL ILE VAL LYS VAL HIS THR ASP LYS GLY ILE SEQRES 4 B 374 VAL GLY VAL GLY GLU ALA ASP SER SER PRO LEU VAL VAL SEQRES 5 B 374 GLN ALA CYS ILE GLU ALA PRO GLN THR ASN PHE TYR CYS SEQRES 6 B 374 ASN GLY LEU LYS ARG LEU LEU ILE GLY GLU ASN ALA LEU SEQRES 7 B 374 GLU ILE GLU ARG LEU TRP ASN LYS MET TYR TRP GLY SER SEQRES 8 B 374 ASN TYR MET GLY ARG ARG GLY ALA GLY ILE HIS ALA ILE SEQRES 9 B 374 SER ALA ILE ASP ILE ALA LEU TRP ASP ILE ALA GLY GLN SEQRES 10 B 374 PHE TYR GLY VAL PRO VAL HIS THR LEU LEU GLY GLY LYS SEQRES 11 B 374 TYR ARG ASP LYS ILE ARG CYS TYR GLY THR PHE ILE PRO SEQRES 12 B 374 ALA ASP LYS PRO GLU ASP ASN VAL ALA ILE VAL GLN GLY SEQRES 13 B 374 LEU LYS ASP GLN GLY PHE SER SER ILE LYS PHE GLY GLY SEQRES 14 B 374 GLY VAL MET GLY ASP ASP PRO ASP THR ASP TYR ALA ILE SEQRES 15 B 374 VAL LYS ALA VAL ARG GLU ALA ALA GLY PRO GLU MET GLU SEQRES 16 B 374 VAL GLN ILE ASP LEU ALA SER LYS TRP HIS THR CYS GLY SEQRES 17 B 374 HIS SER ALA MET MET ALA LYS ARG LEU GLU GLU PHE ASN SEQRES 18 B 374 LEU ASN TRP ILE GLU GLU PRO VAL LEU ALA ASP SER LEU SEQRES 19 B 374 ILE SER TYR GLU LYS LEU SER ARG GLN VAL SER GLN LYS SEQRES 20 B 374 ILE ALA GLY GLY GLU SER LEU THR THR ARG TYR GLU PHE SEQRES 21 B 374 GLN GLU PHE ILE THR LYS SER ASN ALA ASP ILE VAL GLN SEQRES 22 B 374 PRO ASP ILE THR ARG CYS GLY GLY ILE THR GLU MET LYS SEQRES 23 B 374 LYS ILE TYR ASP ILE ALA GLN MET ASN GLY THR GLN LEU SEQRES 24 B 374 ILE PRO HIS GLY PHE SER THR GLY ILE LEU LEU HIS ALA SEQRES 25 B 374 SER VAL HIS PHE LEU ALA ALA CYS GLU GLN GLY THR LEU SEQRES 26 B 374 MET GLU PHE SER GLN SER SER SER PRO LEU PHE THR SER SEQRES 27 B 374 LEU VAL LYS ASN GLN LEU GLN PHE ASP ASN GLY PHE VAL SEQRES 28 B 374 ALA VAL SER ASP ALA PRO GLY LEU GLY ILE GLU LEU ASP SEQRES 29 B 374 GLU GLU LEU ILE ALA LYS TYR ARG VAL ASN HET MG A 374 1 HET UNL A 375 8 HET GOL A 376 6 HET MG B 374 1 HET UNL B 375 4 HETNAM MG MAGNESIUM ION HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *250(H2 O) HELIX 1 1 SER A 47 ALA A 57 1 11 HELIX 2 2 GLY A 66 ILE A 72 1 7 HELIX 3 3 GLU A 78 SER A 90 1 13 HELIX 4 4 GLY A 97 GLY A 119 1 23 HELIX 5 5 PRO A 121 LEU A 126 1 6 HELIX 6 6 LYS A 145 ASP A 148 5 4 HELIX 7 7 ASN A 149 ASP A 158 1 10 HELIX 8 8 ASP A 174 GLY A 190 1 17 HELIX 9 9 THR A 205 LEU A 216 1 12 HELIX 10 10 GLU A 217 ASN A 220 5 4 HELIX 11 11 SER A 232 VAL A 243 1 12 HELIX 12 12 THR A 254 ASN A 267 1 14 HELIX 13 13 GLY A 279 ASN A 294 1 16 HELIX 14 14 THR A 305 ALA A 318 1 14 HELIX 15 15 SER A 332 LEU A 338 1 7 HELIX 16 16 ASP A 363 ARG A 371 1 9 HELIX 17 17 SER B 47 ALA B 57 1 11 HELIX 18 18 GLY B 66 ILE B 72 1 7 HELIX 19 19 GLU B 78 SER B 90 1 13 HELIX 20 20 GLY B 97 GLY B 119 1 23 HELIX 21 21 PRO B 121 LEU B 126 1 6 HELIX 22 22 LYS B 145 ASP B 148 5 4 HELIX 23 23 ASN B 149 GLY B 160 1 12 HELIX 24 24 ASP B 174 GLY B 190 1 17 HELIX 25 25 THR B 205 LEU B 216 1 12 HELIX 26 26 SER B 232 ARG B 241 1 10 HELIX 27 27 THR B 254 ASN B 267 1 14 HELIX 28 28 GLY B 279 ASN B 294 1 16 HELIX 29 29 THR B 305 ALA B 318 1 14 HELIX 30 30 SER B 332 LEU B 338 1 7 HELIX 31 31 ASP B 363 ARG B 371 1 9 SHEET 1 A 3 ILE A 4 ARG A 13 0 SHEET 2 A 3 ASP A 26 THR A 34 -1 O LYS A 31 N GLU A 8 SHEET 3 A 3 VAL A 39 ALA A 44 -1 O GLY A 40 N VAL A 32 SHEET 1 B 8 GLN A 297 LEU A 298 0 SHEET 2 B 8 ILE A 270 VAL A 271 1 N VAL A 271 O GLN A 297 SHEET 3 B 8 LYS A 246 GLY A 249 1 N ILE A 247 O ILE A 270 SHEET 4 B 8 TRP A 223 GLU A 225 1 N ILE A 224 O LYS A 246 SHEET 5 B 8 GLU A 194 ASP A 198 1 N ILE A 197 O GLU A 225 SHEET 6 B 8 SER A 163 GLY A 167 1 N PHE A 166 O ASP A 198 SHEET 7 B 8 LYS A 133 PHE A 140 1 N GLY A 138 O LYS A 165 SHEET 8 B 8 LEU A 324 SER A 328 1 O PHE A 327 N TYR A 137 SHEET 1 C 9 GLN A 297 LEU A 298 0 SHEET 2 C 9 ILE A 270 VAL A 271 1 N VAL A 271 O GLN A 297 SHEET 3 C 9 LYS A 246 GLY A 249 1 N ILE A 247 O ILE A 270 SHEET 4 C 9 TRP A 223 GLU A 225 1 N ILE A 224 O LYS A 246 SHEET 5 C 9 GLU A 194 ASP A 198 1 N ILE A 197 O GLU A 225 SHEET 6 C 9 SER A 163 GLY A 167 1 N PHE A 166 O ASP A 198 SHEET 7 C 9 LYS A 133 PHE A 140 1 N GLY A 138 O LYS A 165 SHEET 8 C 9 PHE A 349 ALA A 351 -1 O VAL A 350 N ILE A 134 SHEET 9 C 9 PHE A 345 ASP A 346 -1 N ASP A 346 O PHE A 349 SHEET 1 D 3 ILE B 4 ARG B 13 0 SHEET 2 D 3 ASP B 26 THR B 34 -1 O ILE B 29 N LEU B 10 SHEET 3 D 3 VAL B 39 ALA B 44 -1 O GLY B 42 N VAL B 30 SHEET 1 E 8 GLN B 297 LEU B 298 0 SHEET 2 E 8 ILE B 270 VAL B 271 1 N VAL B 271 O GLN B 297 SHEET 3 E 8 LYS B 246 GLY B 249 1 N ILE B 247 O ILE B 270 SHEET 4 E 8 TRP B 223 GLU B 225 1 N ILE B 224 O LYS B 246 SHEET 5 E 8 GLU B 194 ASP B 198 1 N ILE B 197 O GLU B 225 SHEET 6 E 8 SER B 163 GLY B 167 1 N PHE B 166 O ASP B 198 SHEET 7 E 8 LYS B 133 PHE B 140 1 N GLY B 138 O LYS B 165 SHEET 8 E 8 LEU B 324 PHE B 327 1 O PHE B 327 N TYR B 137 SHEET 1 F 9 GLN B 297 LEU B 298 0 SHEET 2 F 9 ILE B 270 VAL B 271 1 N VAL B 271 O GLN B 297 SHEET 3 F 9 LYS B 246 GLY B 249 1 N ILE B 247 O ILE B 270 SHEET 4 F 9 TRP B 223 GLU B 225 1 N ILE B 224 O LYS B 246 SHEET 5 F 9 GLU B 194 ASP B 198 1 N ILE B 197 O GLU B 225 SHEET 6 F 9 SER B 163 GLY B 167 1 N PHE B 166 O ASP B 198 SHEET 7 F 9 LYS B 133 PHE B 140 1 N GLY B 138 O LYS B 165 SHEET 8 F 9 PHE B 349 ALA B 351 -1 O VAL B 350 N ILE B 134 SHEET 9 F 9 PHE B 345 ASP B 346 -1 N ASP B 346 O PHE B 349 LINK OD2 ASP A 198 MG MG A 374 1555 1555 2.21 LINK OE2 GLU A 225 MG MG A 374 1555 1555 2.05 LINK OE1 GLU A 251 MG MG A 374 1555 1555 2.12 LINK MG MG A 374 O HOH A 377 1555 1555 2.24 LINK MG MG A 374 O HOH A 489 1555 1555 1.85 LINK MG MG A 374 O HOH A 490 1555 1555 1.90 LINK OD2 ASP B 198 MG MG B 374 1555 1555 2.12 LINK OE2 GLU B 225 MG MG B 374 1555 1555 2.18 LINK OE1 GLU B 251 MG MG B 374 1555 1555 2.13 LINK MG MG B 374 O HOH B 376 1555 1555 2.02 LINK MG MG B 374 O HOH B 377 1555 1555 2.01 LINK MG MG B 374 O HOH B 378 1555 1555 2.04 SITE 1 AC1 6 ASP A 198 GLU A 225 GLU A 251 HOH A 377 SITE 2 AC1 6 HOH A 489 HOH A 490 SITE 1 AC2 2 ARG A 131 HOH A 464 SITE 1 AC3 6 ASP B 198 GLU B 225 GLU B 251 HOH B 376 SITE 2 AC3 6 HOH B 377 HOH B 378 CRYST1 109.207 109.207 141.034 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009157 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007090 0.00000