HEADER VIRAL PROTEIN 21-JUN-11 3SJP TITLE STRUCTURAL CHARACTERIZATION OF A GII.4 2004 NOROVIRUS VARIANT (TCH05) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTRUDING DOMAIN (UNP RESIDUES 221-531); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII.4/2004/NL; SOURCE 3 ORGANISM_TAXID: 311380; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMAL-C2E KEYWDS CAPSID PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SHANKER,J.-M.CHOI,B.SANKARAN,R.L.ATMAR,M.K.ESTES,B.V.V.PRASAD REVDAT 4 13-SEP-23 3SJP 1 REMARK LINK REVDAT 3 24-JAN-18 3SJP 1 AUTHOR REVDAT 2 24-AUG-11 3SJP 1 JRNL REVDAT 1 13-JUL-11 3SJP 0 JRNL AUTH S.SHANKER,J.M.CHOI,B.SANKARAN,R.L.ATMAR,M.K.ESTES,B.V.PRASAD JRNL TITL STRUCTURAL ANALYSIS OF HISTO-BLOOD GROUP ANTIGEN BINDING JRNL TITL 2 SPECIFICITY IN A NOROVIRUS GII.4 EPIDEMIC VARIANT: JRNL TITL 3 IMPLICATIONS FOR EPOCHAL EVOLUTION. JRNL REF J.VIROL. V. 85 8635 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21715503 JRNL DOI 10.1128/JVI.00848-11 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 22999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1111 - 4.0047 0.97 2792 152 0.1847 0.2089 REMARK 3 2 4.0047 - 3.1801 0.87 2433 139 0.1809 0.2140 REMARK 3 3 3.1801 - 2.7785 0.99 2781 153 0.1926 0.2411 REMARK 3 4 2.7785 - 2.5246 1.00 2806 155 0.1927 0.2482 REMARK 3 5 2.5246 - 2.3438 1.00 2806 158 0.2089 0.2612 REMARK 3 6 2.3438 - 2.2056 0.97 2720 139 0.2778 0.3930 REMARK 3 7 2.2056 - 2.0952 1.00 2805 143 0.2158 0.2738 REMARK 3 8 2.0952 - 2.0040 0.96 2670 147 0.2317 0.3041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 48.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.17090 REMARK 3 B22 (A**2) : -1.94010 REMARK 3 B33 (A**2) : -3.23090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.31540 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2351 REMARK 3 ANGLE : 1.021 3211 REMARK 3 CHIRALITY : 0.070 360 REMARK 3 PLANARITY : 0.005 422 REMARK 3 DIHEDRAL : 12.988 837 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 221:292) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6753 65.3941 2.9022 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.2142 REMARK 3 T33: 0.1818 T12: 0.0011 REMARK 3 T13: 0.0123 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.1948 L22: 0.3223 REMARK 3 L33: 0.9234 L12: -0.0566 REMARK 3 L13: 0.0861 L23: -0.1521 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: 0.0250 S13: -0.0209 REMARK 3 S21: -0.0067 S22: -0.0278 S23: -0.0652 REMARK 3 S31: -0.1302 S32: 0.0727 S33: -0.0115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 293:379) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2175 70.6100 23.7465 REMARK 3 T TENSOR REMARK 3 T11: 0.3367 T22: 0.2807 REMARK 3 T33: 0.2397 T12: -0.0292 REMARK 3 T13: -0.0425 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.6421 L22: 0.9558 REMARK 3 L33: 0.5826 L12: -0.0875 REMARK 3 L13: -0.3828 L23: -0.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: -0.1854 S13: 0.0684 REMARK 3 S21: 0.3513 S22: -0.1290 S23: -0.0526 REMARK 3 S31: -0.0135 S32: -0.1202 S33: -0.0084 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 380:428) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2551 59.0835 11.0378 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.1093 REMARK 3 T33: 0.0878 T12: 0.0150 REMARK 3 T13: 0.0069 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 0.7058 L22: 1.7076 REMARK 3 L33: 0.8950 L12: 1.0711 REMARK 3 L13: 0.4338 L23: 0.8847 REMARK 3 S TENSOR REMARK 3 S11: 0.1707 S12: -0.1354 S13: -0.1802 REMARK 3 S21: 0.2088 S22: -0.0788 S23: -0.2907 REMARK 3 S31: 0.1205 S32: -0.0170 S33: 0.9382 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 429:500) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2010 63.0642 -7.5627 REMARK 3 T TENSOR REMARK 3 T11: 0.2506 T22: 0.2347 REMARK 3 T33: 0.1871 T12: 0.0054 REMARK 3 T13: 0.0121 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.3422 L22: 0.5393 REMARK 3 L33: 0.3415 L12: 0.3900 REMARK 3 L13: 0.0215 L23: 0.2122 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: -0.0630 S13: -0.0421 REMARK 3 S21: 0.0280 S22: -0.0617 S23: -0.0339 REMARK 3 S31: -0.0224 S32: 0.0423 S33: 0.0067 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 501:531) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6522 60.6604 -15.0035 REMARK 3 T TENSOR REMARK 3 T11: 0.3212 T22: 0.2422 REMARK 3 T33: 0.1928 T12: -0.0018 REMARK 3 T13: 0.0486 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.2358 L22: 0.2679 REMARK 3 L33: 0.2970 L12: 0.0213 REMARK 3 L13: 0.1950 L23: 0.2045 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.2793 S13: -0.0347 REMARK 3 S21: -0.2091 S22: 0.0878 S23: -0.1252 REMARK 3 S31: -0.1063 S32: 0.0035 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.004 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 19.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : 0.27300 REMARK 200 FOR SHELL : 3.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OBS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC ACETATE, 0.1M MES, 15% V/V REMARK 280 ETHANOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.50050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.48300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.50050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.48300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 83 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 391 REMARK 465 GLY A 392 REMARK 465 SER A 393 REMARK 465 THR A 394 REMARK 465 THR A 395 REMARK 465 HIS A 396 REMARK 465 GLN A 397 REMARK 465 ASN A 398 REMARK 465 GLU A 399 REMARK 465 PRO A 439 REMARK 465 GLY A 440 REMARK 465 CYS A 441 REMARK 465 SER A 442 REMARK 465 GLY A 443 REMARK 465 TYR A 444 REMARK 465 PRO A 445 REMARK 465 ASN A 446 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 390 CB CG CD OE1 NE2 REMARK 470 ASP A 412 CG OD1 OD2 REMARK 470 MET A 447 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 287 CB ARG A 287 CG -0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 254 25.93 -143.26 REMARK 500 TRP A 308 5.09 91.86 REMARK 500 ALA A 319 170.83 177.39 REMARK 500 SER A 413 -166.47 -122.20 REMARK 500 MET A 530 -78.57 -85.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 161 O REMARK 620 2 HOH A 162 O 94.0 REMARK 620 3 HOH A 167 O 75.3 139.0 REMARK 620 4 HIS A 460 ND1 138.9 124.2 83.1 REMARK 620 5 HOH A 549 O 107.6 84.1 62.9 92.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 169 O REMARK 620 2 GLU A 464 OE2 126.9 REMARK 620 3 GLU A 464 OE1 176.5 51.2 REMARK 620 4 HOH A 538 O 79.7 84.3 102.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 160 O REMARK 620 2 HOH A 216 O 122.5 REMARK 620 3 HIS A 347 ND1 98.6 99.5 REMARK 620 4 ASP A 370 OD1 102.2 124.1 105.6 REMARK 620 5 ASP A 370 OD2 84.8 94.1 161.2 55.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 6 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 157 O REMARK 620 2 HOH A 200 O 117.1 REMARK 620 3 HIS A 292 ND1 72.2 107.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 7 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 339 O REMARK 620 2 ASP A 341 OD2 111.6 REMARK 620 3 GLU A 376 OE1 89.5 114.3 REMARK 620 4 GLU A 376 OE2 142.1 79.4 54.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SEJ RELATED DB: PDB REMARK 900 RELATED ID: 3SLD RELATED DB: PDB REMARK 900 RELATED ID: 3SKB RELATED DB: PDB REMARK 900 RELATED ID: 3SLN RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE MUTATIONS ARE STRAIN SPECIFIC AS UNP DOES NOT HAVE THE STRAIN REMARK 999 SPECIFIC SEQUENCE DBREF 3SJP A 221 531 UNP Q5EGK8 Q5EGK8_9CALI 221 531 SEQADV 3SJP THR A 228 UNP Q5EGK8 SER 228 SEE REMARK 999 SEQADV 3SJP ALA A 271 UNP Q5EGK8 VAL 271 SEE REMARK 999 SEQADV 3SJP ASP A 282 UNP Q5EGK8 ASN 282 SEE REMARK 999 SEQRES 1 A 311 GLU SER ARG THR LYS PRO PHE THR VAL PRO ILE LEU THR SEQRES 2 A 311 VAL GLU GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU SEQRES 3 A 311 GLU LYS LEU PHE THR GLY PRO SER SER ALA PHE VAL VAL SEQRES 4 A 311 GLN PRO GLN ASN GLY ARG CYS THR THR ASP GLY ALA LEU SEQRES 5 A 311 LEU GLY THR THR GLN LEU SER PRO VAL ASP ILE CYS THR SEQRES 6 A 311 PHE ARG GLY ASP VAL THR HIS ILE ALA GLY THR GLN ASN SEQRES 7 A 311 TYR THR MET ASN LEU ALA SER GLN ASN TRP ASN ASN TYR SEQRES 8 A 311 ASP PRO THR GLU GLU ILE PRO ALA PRO LEU GLY THR PRO SEQRES 9 A 311 ASP PHE VAL GLY LYS ILE GLN GLY VAL LEU THR GLN THR SEQRES 10 A 311 THR ARG ARG ASP GLY SER THR ARG GLY HIS LYS ALA THR SEQRES 11 A 311 VAL SER THR GLY SER VAL HIS PHE THR PRO LYS LEU GLY SEQRES 12 A 311 SER VAL GLN PHE SER THR ASP THR SER ASN ASP PHE GLU SEQRES 13 A 311 THR GLY GLN ASN THR ARG PHE THR PRO VAL GLY VAL VAL SEQRES 14 A 311 GLN ASP GLY SER THR THR HIS GLN ASN GLU PRO GLN GLN SEQRES 15 A 311 TRP VAL LEU PRO ASP TYR SER GLY ARG ASP SER HIS ASN SEQRES 16 A 311 VAL HIS LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY SEQRES 17 A 311 GLU GLN LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SEQRES 18 A 311 SER GLY TYR PRO ASN MET ASN LEU ASP CYS LEU LEU PRO SEQRES 19 A 311 GLN GLU TRP VAL GLN HIS PHE TYR GLN GLU SER ALA PRO SEQRES 20 A 311 ALA GLN SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO SEQRES 21 A 311 ASP THR GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SEQRES 22 A 311 SER GLY TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP SEQRES 23 A 311 LEU VAL ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER SEQRES 24 A 311 TRP VAL ASN GLN PHE TYR THR LEU ALA PRO MET GLY HET ZN A 1 1 HET ZN A 2 1 HET ZN A 3 1 HET ZN A 4 1 HET ZN A 5 1 HET ZN A 6 1 HET ZN A 7 1 HETNAM ZN ZINC ION FORMUL 2 ZN 7(ZN 2+) FORMUL 9 HOH *208(H2 O) HELIX 1 1 THR A 233 MET A 237 5 5 HELIX 2 2 SER A 279 ILE A 283 5 5 HELIX 3 3 THR A 359 LEU A 362 5 4 HELIX 4 4 PRO A 454 SER A 465 1 12 SHEET 1 A 4 LEU A 449 CYS A 451 0 SHEET 2 A 4 GLU A 429 SER A 436 -1 N PHE A 434 O CYS A 451 SHEET 3 A 4 LYS A 248 THR A 251 -1 N PHE A 250 O PHE A 433 SHEET 4 A 4 HIS A 505 ASP A 506 -1 O HIS A 505 N THR A 251 SHEET 1 B 6 LEU A 449 CYS A 451 0 SHEET 2 B 6 GLU A 429 SER A 436 -1 N PHE A 434 O CYS A 451 SHEET 3 B 6 TYR A 496 ALA A 500 -1 O VAL A 499 N GLN A 430 SHEET 4 B 6 VAL A 485 HIS A 492 -1 N HIS A 492 O TYR A 496 SHEET 5 B 6 VAL A 472 VAL A 478 -1 N PHE A 477 O LEU A 486 SHEET 6 B 6 TYR A 514 VAL A 521 -1 O SER A 519 N LEU A 474 SHEET 1 C 7 PHE A 286 HIS A 292 0 SHEET 2 C 7 TYR A 299 LEU A 303 -1 O ASN A 302 N ASP A 289 SHEET 3 C 7 SER A 364 THR A 369 -1 O VAL A 365 N MET A 301 SHEET 4 C 7 GLY A 346 SER A 352 -1 N THR A 350 O SER A 368 SHEET 5 C 7 LYS A 329 GLN A 336 -1 N LEU A 334 O HIS A 347 SHEET 6 C 7 THR A 381 VAL A 388 -1 O VAL A 386 N GLN A 331 SHEET 7 C 7 PHE A 286 HIS A 292 -1 N PHE A 286 O PHE A 383 LINK ZN ZN A 1 O HOH A 161 1555 1555 2.37 LINK ZN ZN A 1 O HOH A 162 1555 1555 2.50 LINK ZN ZN A 1 O HOH A 167 1555 1555 2.57 LINK ZN ZN A 1 ND1 HIS A 460 1555 1555 2.29 LINK ZN ZN A 1 O HOH A 549 1555 1555 2.32 LINK ZN ZN A 2 O HOH A 193 1555 1555 2.39 LINK ZN ZN A 4 O HOH A 169 1555 1555 2.34 LINK ZN ZN A 4 OE2 GLU A 464 1555 1555 2.52 LINK ZN ZN A 4 OE1 GLU A 464 1555 1555 2.55 LINK ZN ZN A 4 O HOH A 538 1555 1555 2.32 LINK ZN ZN A 5 O HOH A 160 1555 1555 2.62 LINK ZN ZN A 5 O HOH A 216 1555 1555 2.34 LINK ZN ZN A 5 ND1 HIS A 347 1555 1555 2.26 LINK ZN ZN A 5 OD1 ASP A 370 1555 1555 2.25 LINK ZN ZN A 5 OD2 ASP A 370 1555 1555 2.44 LINK ZN ZN A 6 O HOH A 157 1555 1555 2.22 LINK ZN ZN A 6 O HOH A 200 1555 1555 2.38 LINK ZN ZN A 6 ND1 HIS A 292 1555 1555 2.36 LINK ZN ZN A 7 O ARG A 339 1555 1555 2.47 LINK ZN ZN A 7 OD2 ASP A 341 1555 1555 2.35 LINK ZN ZN A 7 OE1 GLU A 376 1555 1555 2.36 LINK ZN ZN A 7 OE2 GLU A 376 1555 1555 2.47 SITE 1 AC1 5 HOH A 161 HOH A 162 HOH A 167 HIS A 460 SITE 2 AC1 5 HOH A 549 SITE 1 AC2 1 HOH A 193 SITE 1 AC3 6 HOH A 79 HOH A 163 HOH A 177 ASP A 471 SITE 2 AC3 6 VAL A 472 HIS A 492 SITE 1 AC4 4 HOH A 159 HOH A 169 GLU A 464 HOH A 538 SITE 1 AC5 4 HOH A 160 HOH A 216 HIS A 347 ASP A 370 SITE 1 AC6 4 HOH A 117 HOH A 157 HOH A 200 HIS A 292 SITE 1 AC7 5 ARG A 339 ASP A 341 GLU A 376 HIS A 414 SITE 2 AC7 5 VAL A 416 CRYST1 89.001 72.966 55.610 90.00 97.78 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011236 0.000000 0.001534 0.00000 SCALE2 0.000000 0.013705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018149 0.00000