HEADER DNA BINDING PROTEIN 21-JUN-11 3SJS TITLE CRYSTAL STRUCTURE OF URE3-BINDING PROTEIN FROM ENTAMOEBA HISTOLYTICA, TITLE 2 (D127A,N129A) MUTANT, NATIVE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: URE3-BP SEQUENCE SPECIFIC DNA BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 5759; SOURCE 4 GENE: URE3-BP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DNA BINDING PROTEIN, EF-HAND, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-SEP-23 3SJS 1 REMARK SEQADV LINK REVDAT 1 06-JUL-11 3SJS 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),A.GARDBERG,T.EDWARDS,B.STAKER,P.SKUBAK,C.GILCHRIST, JRNL AUTH 3 L.STEWART JRNL TITL CRYSTAL STRUCTURE OF URE3-BINDING PROTEIN FROM ENTAMOEBA JRNL TITL 2 HISTOLYTICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1795 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1217 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2442 ; 1.452 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2937 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 5.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;30.761 ;23.218 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 285 ;13.457 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.892 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2003 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 410 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1069 ; 0.719 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 425 ; 0.189 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1721 ; 1.338 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 726 ; 2.417 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 718 ; 3.803 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1660 37.1270 0.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.0855 REMARK 3 T33: 0.1138 T12: 0.0520 REMARK 3 T13: 0.0222 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.4352 L22: 1.4589 REMARK 3 L33: 8.7291 L12: 1.8599 REMARK 3 L13: -4.5511 L23: -3.6008 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.1225 S13: -0.1809 REMARK 3 S21: -0.0394 S22: -0.1214 S23: -0.0427 REMARK 3 S31: 0.0255 S32: 0.2305 S33: 0.1587 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6280 18.0480 9.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.0054 T22: 0.0609 REMARK 3 T33: 0.0628 T12: 0.0096 REMARK 3 T13: 0.0053 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.0975 L22: 2.5174 REMARK 3 L33: 2.2477 L12: 1.0349 REMARK 3 L13: 0.0383 L23: -0.3896 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.1726 S13: -0.1611 REMARK 3 S21: -0.0667 S22: -0.0119 S23: 0.0774 REMARK 3 S31: -0.0491 S32: -0.1270 S33: 0.0887 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6790 17.1320 18.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.0635 T22: 0.0759 REMARK 3 T33: 0.0730 T12: -0.0303 REMARK 3 T13: 0.0177 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.1452 L22: 1.0307 REMARK 3 L33: 2.4049 L12: 0.3221 REMARK 3 L13: 0.2761 L23: 0.3204 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.1053 S13: -0.1445 REMARK 3 S21: 0.1472 S22: -0.1470 S23: 0.2129 REMARK 3 S31: -0.0436 S32: -0.2174 S33: 0.1347 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3350 16.3650 12.8250 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.0885 REMARK 3 T33: 0.0317 T12: 0.0114 REMARK 3 T13: 0.0220 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.8583 L22: 1.7061 REMARK 3 L33: 0.8008 L12: -0.8171 REMARK 3 L13: -0.0721 L23: 0.1958 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: 0.0738 S13: -0.0593 REMARK 3 S21: -0.0850 S22: -0.0187 S23: -0.1328 REMARK 3 S31: -0.0229 S32: 0.1428 S33: -0.0526 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0990 23.8670 25.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0687 REMARK 3 T33: 0.0213 T12: -0.0039 REMARK 3 T13: -0.0098 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.0206 L22: 2.1887 REMARK 3 L33: 1.4170 L12: -0.3943 REMARK 3 L13: -0.5307 L23: 0.8250 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.0222 S13: 0.0368 REMARK 3 S21: 0.0915 S22: 0.0551 S23: 0.0014 REMARK 3 S31: 0.0066 S32: 0.1646 S33: -0.0324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541780 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16665 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.050 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.75 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 215760A3. REMARK 280 FOCUS SCREEN BASED ON CRYOFULL G6. 1 UL 40% PEG600, 0.1 M REMARK 280 CITRATE PH 4.56 + 1 UL ENHIA.01648.A.D18 PD00123 (VCID3088) AT REMARK 280 9.5 MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH REMARK 280 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.44500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.44500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.12500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.14500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.12500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.14500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.44500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.12500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.14500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.44500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.12500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.14500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 46.25000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.44500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 ARG A 164 REMARK 465 GLY A 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 MET A 166 CG SD CE REMARK 470 LYS A 201 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 160 OE1 GLU A 220 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 39.00 -140.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 221 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ASP A 63 OD1 81.8 REMARK 620 3 SER A 65 OG 93.7 77.6 REMARK 620 4 THR A 67 O 91.8 153.5 77.2 REMARK 620 5 GLU A 69 OE1 175.0 102.9 88.8 84.6 REMARK 620 6 GLU A 72 OE2 89.3 81.0 157.7 124.8 90.1 REMARK 620 7 GLU A 72 OE1 120.2 118.7 143.1 86.8 56.3 47.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 222 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD1 REMARK 620 2 ASP A 99 OD1 86.9 REMARK 620 3 ASN A 101 OD1 81.9 88.1 REMARK 620 4 HIS A 103 O 83.7 168.8 84.6 REMARK 620 5 HOH A 278 O 164.8 103.1 109.5 87.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 222 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SIA RELATED DB: PDB REMARK 900 (D127A,N129A) MUTANT, SOLVED BY IODIDE-SAD REMARK 900 RELATED ID: 3SIB RELATED DB: PDB REMARK 900 WILD-TYPE, NATIVE REMARK 900 RELATED ID: ENHIA.01648.A RELATED DB: TARGETDB DBREF 3SJS A 1 220 UNP Q9GSV7 Q9GSV7_ENTHI 1 220 SEQADV 3SJS ALA A 127 UNP Q9GSV7 ASP 127 ENGINEERED MUTATION SEQADV 3SJS ALA A 129 UNP Q9GSV7 ASN 129 ENGINEERED MUTATION SEQRES 1 A 220 MET GLN PRO PRO VAL ALA ASN PHE CYS LEU TRP ASN LEU SEQRES 2 A 220 GLN PRO ILE GLN GLY SER TRP MET GLY ALA ALA CYS ILE SEQRES 3 A 220 TYR GLN MET PRO PRO SER VAL ARG ASN THR TRP TRP PHE SEQRES 4 A 220 PRO LEU LEU ASN THR ILE PRO LEU ASP GLN TYR THR ARG SEQRES 5 A 220 ILE TYR GLN TRP PHE MET GLY VAL ASP ARG ASP ARG SER SEQRES 6 A 220 GLY THR LEU GLU ILE ASN GLU LEU MET MET GLY GLN PHE SEQRES 7 A 220 PRO GLY GLY ILE ARG LEU SER PRO GLN THR ALA LEU ARG SEQRES 8 A 220 MET MET ARG ILE PHE ASP THR ASP PHE ASN GLY HIS ILE SEQRES 9 A 220 SER PHE TYR GLU PHE MET ALA MET TYR LYS PHE MET GLU SEQRES 10 A 220 LEU ALA TYR ASN LEU PHE VAL MET ASN ALA ARG ALA ARG SEQRES 11 A 220 SER GLY THR LEU GLU PRO HIS GLU ILE LEU PRO ALA LEU SEQRES 12 A 220 GLN GLN LEU GLY PHE TYR ILE ASN GLN ARG THR SER LEU SEQRES 13 A 220 LEU LEU HIS ARG LEU PHE ALA ARG GLY MET ALA PHE CYS SEQRES 14 A 220 ASP LEU ASN CYS TRP ILE ALA ILE CYS ALA PHE ALA ALA SEQRES 15 A 220 GLN THR ARG SER ALA TYR GLN MET ILE PHE MET ASN PRO SEQRES 16 A 220 TYR TYR GLY PRO MET LYS PRO PHE ASN PRO MET GLU PHE SEQRES 17 A 220 GLY LYS PHE LEU ASP VAL VAL THR SER LEU LEU GLU HET CA A 221 1 HET CA A 222 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *101(H2 O) HELIX 1 1 SER A 19 MET A 29 1 11 HELIX 2 2 PRO A 30 ASN A 35 1 6 HELIX 3 3 TRP A 38 ILE A 45 5 8 HELIX 4 4 PRO A 46 ASP A 61 1 16 HELIX 5 5 GLU A 69 GLY A 76 1 8 HELIX 6 6 PHE A 78 ILE A 82 5 5 HELIX 7 7 SER A 85 ASP A 97 1 13 HELIX 8 8 SER A 105 ALA A 127 1 23 HELIX 9 9 GLU A 135 GLY A 147 1 13 HELIX 10 10 ASN A 151 ALA A 163 1 13 HELIX 11 11 LEU A 171 MET A 193 1 23 HELIX 12 12 ASN A 194 GLY A 198 5 5 HELIX 13 13 ASN A 204 LEU A 218 1 15 SHEET 1 A 2 THR A 133 LEU A 134 0 SHEET 2 A 2 CYS A 169 ASP A 170 -1 O CYS A 169 N LEU A 134 LINK OD1 ASP A 61 CA CA A 221 1555 1555 2.44 LINK OD1 ASP A 63 CA CA A 221 1555 1555 2.37 LINK OG SER A 65 CA CA A 221 1555 1555 2.39 LINK O THR A 67 CA CA A 221 1555 1555 2.31 LINK OE1 GLU A 69 CA CA A 221 1555 1555 2.48 LINK OE2 GLU A 72 CA CA A 221 1555 1555 2.53 LINK OE1 GLU A 72 CA CA A 221 1555 1555 2.80 LINK OD1 ASP A 97 CA CA A 222 1555 1555 2.23 LINK OD1 ASP A 99 CA CA A 222 1555 1555 2.28 LINK OD1 ASN A 101 CA CA A 222 1555 1555 2.49 LINK O HIS A 103 CA CA A 222 1555 1555 2.36 LINK CA CA A 222 O HOH A 278 1555 1555 2.41 SITE 1 AC1 6 ASP A 61 ASP A 63 SER A 65 THR A 67 SITE 2 AC1 6 GLU A 69 GLU A 72 SITE 1 AC2 6 ASP A 97 ASP A 99 ASN A 101 HIS A 103 SITE 2 AC2 6 GLU A 108 HOH A 278 CRYST1 46.250 68.290 130.890 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021622 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007640 0.00000