HEADER TRANSLATION 22-JUN-11 3SJY OBSLTE 28-AUG-13 3SJY 4M53 TITLE THE STRUCTURE OF INITIATION FACTOR AIF2 GAMMA SUBUNIT DELTA 37-47 FROM TITLE 2 ARCHAEON SULFOLOBUS SOLFATARICUS COMPLEXED WITH GDPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AIF2-GAMMA, EIF-2-GAMMA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: ATCC 35092 / DSM 1617 / JCM 11322 / P2; SOURCE 5 GENE: EIF2G, SSO0412; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS ZINC FINGER, INITIATE TRANSLATION, TRNA BINDING, MRNA BINDING, GTP KEYWDS 2 BINDING, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR V.I.ARKHIPOVA,A.M.LAZOPULO,S.M.LAZOPULO,E.A.STOLBOUSHKINA, AUTHOR 2 A.G.GABDOULKHAKOV,O.S.NIKONOV,M.B.GARBER,S.V.NIKONOV REVDAT 2 28-AUG-13 3SJY 1 OBSLTE REVDAT 1 04-JUL-12 3SJY 0 JRNL AUTH V.I.ARKHIPOVA,A.M.LAZOPULO,S.M.LAZOPULO,E.A.STOLBOUSHKINA, JRNL AUTH 2 A.G.GABDOULKHAKOV,O.S.NIKONOV,M.B.GARBER,S.V.NIKONOV JRNL TITL HOLD FOR PUBLICATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 72653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.0753 - 4.2946 1.00 7077 372 0.1488 0.1665 REMARK 3 2 4.2946 - 3.4151 1.00 6969 367 0.1396 0.1605 REMARK 3 3 3.4151 - 2.9853 1.00 6916 364 0.1681 0.1871 REMARK 3 4 2.9853 - 2.7132 1.00 6892 363 0.1778 0.1971 REMARK 3 5 2.7132 - 2.5192 1.00 6887 362 0.1798 0.2224 REMARK 3 6 2.5192 - 2.3709 1.00 6895 363 0.1767 0.2269 REMARK 3 7 2.3709 - 2.2524 1.00 6868 362 0.1852 0.2162 REMARK 3 8 2.2524 - 2.1545 1.00 6865 361 0.2011 0.2390 REMARK 3 9 2.1545 - 2.0716 1.00 6892 363 0.2121 0.2353 REMARK 3 10 2.0716 - 2.0002 0.98 6759 356 0.2347 0.2574 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 40.79 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42470 REMARK 3 B22 (A**2) : -1.42470 REMARK 3 B33 (A**2) : -1.42470 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3259 REMARK 3 ANGLE : 1.498 4420 REMARK 3 CHIRALITY : 0.097 514 REMARK 3 PLANARITY : 0.006 548 REMARK 3 DIHEDRAL : 18.640 1249 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-11. REMARK 100 THE RCSB ID CODE IS RCSB066294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 192.6 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2AHO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M SODIUM FORMATE, 44MM SODIUM REMARK 280 CACODYLATE, GDPCP, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 93.44550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 93.44550 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 93.44550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 93.44550 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 93.44550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 93.44550 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 93.44550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 93.44550 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 93.44550 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 93.44550 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 93.44550 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 93.44550 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 93.44550 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 93.44550 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 93.44550 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 93.44550 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 93.44550 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 93.44550 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 93.44550 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 93.44550 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 93.44550 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 93.44550 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 93.44550 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 93.44550 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 93.44550 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 93.44550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 230 -15.66 98.12 REMARK 500 ASP A 250 -3.07 87.16 REMARK 500 LYS A 354 -6.74 78.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GCP A 417 O2B REMARK 620 2 HOH A 485 O 171.0 REMARK 620 3 GCP A 417 O1G 93.4 95.4 REMARK 620 4 THR A 23 OG1 74.1 96.9 164.1 REMARK 620 5 HOH A 432 O 88.5 90.9 84.0 85.9 REMARK 620 6 HOH A 768 O 81.4 98.3 101.4 86.6 168.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 416 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 492 O REMARK 620 2 HOH A 761 O 89.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 422 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 68 O REMARK 620 2 ASP A 192 OD2 109.4 REMARK 620 3 GLU A 66 O 89.3 102.2 REMARK 620 4 HOH A 448 O 140.6 106.2 99.3 REMARK 620 5 HOH A 447 O 82.9 89.8 167.4 80.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 420 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 111 O REMARK 620 2 HOH A 444 O 83.4 REMARK 620 3 HOH A 751 O 94.0 92.7 REMARK 620 4 HOH A 443 O 163.9 92.5 101.8 REMARK 620 5 HOH A 446 O 97.5 179.1 87.3 86.6 REMARK 620 6 HOH A 878 O 82.5 101.4 165.0 83.1 78.7 REMARK 620 7 HOH A 473 O 140.6 118.4 55.3 54.5 60.9 120.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 421 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 54 OG1 REMARK 620 2 HOH A 844 O 91.2 REMARK 620 3 HOH A 469 O 161.1 95.2 REMARK 620 4 HOH A 802 O 97.7 105.1 97.8 REMARK 620 5 HOH A 885 O 81.9 77.0 82.2 177.9 REMARK 620 6 THR A 70 O 85.9 155.8 81.0 99.1 78.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 418 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 323 O REMARK 620 2 HOH A 879 O 87.1 REMARK 620 3 HOH A 437 O 94.4 90.4 REMARK 620 4 HOH A 435 O 172.0 94.7 93.3 REMARK 620 5 HOH A 438 O 78.8 162.4 101.1 97.9 REMARK 620 6 HOH A 436 O 84.2 88.6 178.3 88.0 79.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 429 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 439 O REMARK 620 2 HOH A 440 O 84.6 REMARK 620 3 HOH A 790 O 95.3 88.7 REMARK 620 4 HOH A 486 O 77.2 72.6 160.3 REMARK 620 5 HOH A 801 O 86.1 170.4 89.7 107.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 419 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 439 O REMARK 620 2 HOH A 450 O 96.5 REMARK 620 3 LYS A 171 O 90.2 72.1 REMARK 620 4 GLN A 168 O 167.0 93.4 100.9 REMARK 620 5 HOH A 790 O 91.0 92.0 164.1 80.2 REMARK 620 6 PHE A 169 O 91.3 165.2 95.3 81.1 100.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 430 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 647 O REMARK 620 2 HOH A 486 O 89.5 REMARK 620 3 HOH A 488 O 177.1 90.3 REMARK 620 4 HOH A 487 O 102.6 92.0 80.4 REMARK 620 5 HOH A 735 O 72.9 159.5 107.8 81.9 REMARK 620 6 HOH A 801 O 83.5 103.3 93.7 163.6 85.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GCP A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 428 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 430 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PEN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GDP AND GPP(NH)P REMARK 900 RELATED ID: 2PMD RELATED DB: PDB REMARK 900 AIF2GAMMA IN COMPLEX WITH GDP AND GPP(NH)P REMARK 900 RELATED ID: 2PLF RELATED DB: PDB REMARK 900 AIF2GAMMA IN THE NUCLEOTIDE-FREE FORM DBREF 3SJY A 2 415 UNP Q980A5 IF2G_SULSO 2 415 SEQADV 3SJY A UNP Q980A5 HIS 37 DELETION SEQADV 3SJY A UNP Q980A5 SER 38 DELETION SEQADV 3SJY A UNP Q980A5 GLU 39 DELETION SEQADV 3SJY A UNP Q980A5 GLU 40 DELETION SEQADV 3SJY A UNP Q980A5 LEU 41 DELETION SEQADV 3SJY A UNP Q980A5 LYS 42 DELETION SEQADV 3SJY A UNP Q980A5 ARG 43 DELETION SEQADV 3SJY A UNP Q980A5 GLY 44 DELETION SEQADV 3SJY A UNP Q980A5 MET 45 DELETION SEQADV 3SJY A UNP Q980A5 THR 46 DELETION SEQADV 3SJY A UNP Q980A5 ILE 47 DELETION SEQRES 1 A 403 ALA TRP PRO LYS VAL GLN PRO GLU VAL ASN ILE GLY VAL SEQRES 2 A 403 VAL GLY HIS VAL ASP HIS GLY LYS THR THR LEU VAL GLN SEQRES 3 A 403 ALA ILE THR GLY ILE TRP THR SER LYS LYS LEU GLY TYR SEQRES 4 A 403 ALA GLU THR ASN ILE GLY VAL CYS GLU SER CYS LYS LYS SEQRES 5 A 403 PRO GLU ALA TYR VAL THR GLU PRO SER CYS LYS SER CYS SEQRES 6 A 403 GLY SER ASP ASP GLU PRO LYS PHE LEU ARG ARG ILE SER SEQRES 7 A 403 PHE ILE ASP ALA PRO GLY HIS GLU VAL LEU MET ALA THR SEQRES 8 A 403 MET LEU SER GLY ALA ALA LEU MET ASP GLY ALA ILE LEU SEQRES 9 A 403 VAL VAL ALA ALA ASN GLU PRO PHE PRO GLN PRO GLN THR SEQRES 10 A 403 ARG GLU HIS PHE VAL ALA LEU GLY ILE ILE GLY VAL LYS SEQRES 11 A 403 ASN LEU ILE ILE VAL GLN ASN LYS VAL ASP VAL VAL SER SEQRES 12 A 403 LYS GLU GLU ALA LEU SER GLN TYR ARG GLN ILE LYS GLN SEQRES 13 A 403 PHE THR LYS GLY THR TRP ALA GLU ASN VAL PRO ILE ILE SEQRES 14 A 403 PRO VAL SER ALA LEU HIS LYS ILE ASN ILE ASP SER LEU SEQRES 15 A 403 ILE GLU GLY ILE GLU GLU TYR ILE LYS THR PRO TYR ARG SEQRES 16 A 403 ASP LEU SER GLN LYS PRO VAL MET LEU VAL ILE ARG SER SEQRES 17 A 403 PHE ASP VAL ASN LYS PRO GLY THR GLN PHE ASN GLU LEU SEQRES 18 A 403 LYS GLY GLY VAL ILE GLY GLY SER ILE ILE GLN GLY LEU SEQRES 19 A 403 PHE LYS VAL ASP GLN GLU ILE LYS VAL LEU PRO GLY LEU SEQRES 20 A 403 ARG VAL GLU LYS GLN GLY LYS VAL SER TYR GLU PRO ILE SEQRES 21 A 403 PHE THR LYS ILE SER SER ILE ARG PHE GLY ASP GLU GLU SEQRES 22 A 403 PHE LYS GLU ALA LYS PRO GLY GLY LEU VAL ALA ILE GLY SEQRES 23 A 403 THR TYR LEU ASP PRO SER LEU THR LYS ALA ASP ASN LEU SEQRES 24 A 403 LEU GLY SER ILE ILE THR LEU ALA ASP ALA GLU VAL PRO SEQRES 25 A 403 VAL LEU TRP ASN ILE ARG ILE LYS TYR ASN LEU LEU GLU SEQRES 26 A 403 ARG VAL VAL GLY ALA LYS GLU MET LEU LYS VAL ASP PRO SEQRES 27 A 403 ILE ARG ALA LYS GLU THR LEU MET LEU SER VAL GLY SER SEQRES 28 A 403 SER THR THR LEU GLY ILE VAL THR SER VAL LYS LYS ASP SEQRES 29 A 403 GLU ILE GLU VAL GLU LEU ARG ARG PRO VAL ALA VAL TRP SEQRES 30 A 403 SER ASN ASN ILE ARG THR VAL ILE SER ARG GLN ILE ALA SEQRES 31 A 403 GLY ARG TRP ARG MET ILE GLY TRP GLY LEU VAL GLU ILE HET GCP A 417 32 HET MG A 1 1 HET MG A 416 1 HET MG A 418 1 HET MG A 419 1 HET MG A 420 1 HET MG A 421 1 HET MG A 422 1 HET BME A 423 4 HET FMT A 424 3 HET FMT A 425 3 HET FMT A 426 3 HET FMT A 427 3 HET GDP A 428 28 HET MG A 429 1 HET MG A 430 1 HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM FMT FORMIC ACID HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GCP C11 H18 N5 O13 P3 FORMUL 3 MG 9(MG 2+) FORMUL 10 BME C2 H6 O S FORMUL 11 FMT 4(C H2 O2) FORMUL 15 GDP C10 H15 N5 O11 P2 FORMUL 18 HOH *490(H2 O) HELIX 1 1 GLY A 21 GLY A 31 1 11 HELIX 2 2 CYS A 74 GLY A 78 5 5 HELIX 3 3 HIS A 97 VAL A 99 5 3 HELIX 4 4 LEU A 100 ALA A 109 1 10 HELIX 5 5 GLN A 126 GLY A 140 1 15 HELIX 6 6 LYS A 150 VAL A 154 5 5 HELIX 7 7 SER A 155 LYS A 171 1 17 HELIX 8 8 ASN A 190 ILE A 202 1 13 HELIX 9 9 ASP A 302 LYS A 307 1 6 HELIX 10 10 ALA A 308 ASN A 310 5 3 SHEET 1 A 7 TYR A 68 VAL A 69 0 SHEET 2 A 7 GLY A 50 VAL A 58 -1 N GLY A 57 O VAL A 69 SHEET 3 A 7 LYS A 84 ASP A 93 -1 O ILE A 89 N THR A 54 SHEET 4 A 7 ASN A 11 VAL A 15 1 N ILE A 12 O SER A 90 SHEET 5 A 7 GLY A 113 ALA A 119 1 O GLY A 113 N GLY A 13 SHEET 6 A 7 LEU A 144 ASN A 149 1 O VAL A 147 N VAL A 118 SHEET 7 A 7 ILE A 180 PRO A 182 1 O ILE A 181 N ILE A 146 SHEET 1 B 8 GLU A 284 PHE A 286 0 SHEET 2 B 8 LYS A 266 PHE A 281 -1 N ILE A 279 O PHE A 286 SHEET 3 B 8 VAL A 295 THR A 299 -1 O ALA A 296 N ARG A 280 SHEET 4 B 8 VAL A 237 GLN A 244 -1 N ILE A 238 O ILE A 297 SHEET 5 B 8 VAL A 214 PHE A 221 -1 N ARG A 219 O GLY A 239 SHEET 6 B 8 ILE A 315 LEU A 318 -1 O ILE A 316 N MET A 215 SHEET 7 B 8 GLU A 252 LYS A 263 -1 N LEU A 256 O ILE A 315 SHEET 8 B 8 LYS A 266 PHE A 281 -1 O SER A 268 N VAL A 261 SHEET 1 C 2 PHE A 247 LYS A 248 0 SHEET 2 C 2 GLU A 288 ALA A 289 -1 O ALA A 289 N PHE A 247 SHEET 1 D 7 VAL A 325 LEU A 335 0 SHEET 2 D 7 GLU A 377 ALA A 387 -1 O ILE A 378 N ILE A 331 SHEET 3 D 7 SER A 364 VAL A 373 -1 N LEU A 367 O ARG A 383 SHEET 4 D 7 THR A 356 VAL A 361 -1 N LEU A 359 O THR A 366 SHEET 5 D 7 ARG A 394 ILE A 401 -1 O VAL A 396 N SER A 360 SHEET 6 D 7 ARG A 404 GLU A 414 -1 O ARG A 404 N ILE A 401 SHEET 7 D 7 VAL A 325 LEU A 335 -1 N ASN A 334 O TRP A 410 SSBOND 1 CYS A 59 CYS A 74 1555 1555 2.05 SSBOND 2 CYS A 62 CYS A 77 1555 1555 2.03 LINK O2B GCP A 417 MG MG A 1 1555 1555 2.21 LINK MG MG A 1 O HOH A 485 1555 1555 2.22 LINK O1G GCP A 417 MG MG A 1 1555 1555 2.23 LINK OG1 THR A 23 MG MG A 1 1555 1555 2.28 LINK MG MG A 1 O HOH A 432 1555 1555 2.29 LINK MG MG A 1 O HOH A 768 1555 1555 2.31 LINK MG MG A 416 O HOH A 492 1555 1555 2.33 LINK O TYR A 68 MG MG A 422 1555 1555 2.36 LINK OD2 ASP A 192 MG MG A 422 1555 1555 2.42 LINK O MET A 111 MG MG A 420 1555 1555 2.43 LINK OG1 THR A 54 MG MG A 421 1555 1555 2.43 LINK MG MG A 416 O HOH A 761 1555 1555 2.44 LINK O GLU A 66 MG MG A 422 1555 1555 2.46 LINK MG MG A 420 O HOH A 444 1555 1555 2.46 LINK O VAL A 323 MG MG A 418 1555 1555 2.47 LINK MG MG A 420 O HOH A 751 1555 1555 2.47 LINK MG MG A 422 O HOH A 448 1555 1555 2.49 LINK MG MG A 418 O HOH A 879 1555 1555 2.52 LINK MG MG A 429 O HOH A 439 1555 1555 2.52 LINK MG MG A 421 O HOH A 844 1555 1555 2.53 LINK MG MG A 418 O HOH A 437 1555 1555 2.54 LINK MG MG A 421 O HOH A 469 1555 1555 2.55 LINK MG MG A 429 O HOH A 440 1555 1555 2.57 LINK MG MG A 421 O HOH A 802 1555 1555 2.57 LINK MG MG A 420 O HOH A 443 1555 1555 2.58 LINK MG MG A 419 O HOH A 439 1555 1555 2.59 LINK MG MG A 419 O HOH A 450 1555 1555 2.59 LINK MG MG A 418 O HOH A 435 1555 1555 2.59 LINK MG MG A 430 O HOH A 647 1555 1555 2.60 LINK MG MG A 429 O HOH A 790 1555 1555 2.61 LINK MG MG A 418 O HOH A 438 1555 1555 2.61 LINK O LYS A 171 MG MG A 419 1555 1555 2.61 LINK MG MG A 429 O HOH A 486 1555 1555 2.63 LINK MG MG A 418 O HOH A 436 1555 1555 2.63 LINK O GLN A 168 MG MG A 419 1555 1555 2.64 LINK MG MG A 420 O HOH A 446 1555 1555 2.65 LINK MG MG A 422 O HOH A 447 1555 1555 2.67 LINK MG MG A 421 O HOH A 885 1555 1555 2.69 LINK MG MG A 430 O HOH A 486 1555 1555 2.71 LINK MG MG A 430 O HOH A 488 1555 1555 2.72 LINK MG MG A 430 O HOH A 487 1555 1555 2.72 LINK MG MG A 419 O HOH A 790 1555 1555 2.73 LINK MG MG A 430 O HOH A 735 1555 1555 2.75 LINK MG MG A 429 O HOH A 801 1555 1555 2.75 LINK O PHE A 169 MG MG A 419 1555 1555 2.77 LINK MG MG A 420 O HOH A 878 1555 1555 2.77 LINK MG MG A 420 O HOH A 473 1555 1555 2.80 LINK MG MG A 430 O HOH A 801 1555 1555 2.83 LINK O THR A 70 MG MG A 421 1555 1555 2.85 CISPEP 1 LYS A 64 PRO A 65 0 -1.32 CISPEP 2 PHE A 124 PRO A 125 0 -5.40 CISPEP 3 LEU A 256 PRO A 257 0 0.57 SITE 1 AC1 30 MG A 1 VAL A 18 ASP A 19 HIS A 20 SITE 2 AC1 30 GLY A 21 LYS A 22 THR A 23 THR A 24 SITE 3 AC1 30 HOH A 42 LYS A 48 PRO A 95 GLY A 96 SITE 4 AC1 30 ASN A 149 LYS A 150 ASP A 152 VAL A 153 SITE 5 AC1 30 SER A 184 ALA A 185 LEU A 186 FMT A 427 SITE 6 AC1 30 HOH A 432 HOH A 501 HOH A 504 HOH A 525 SITE 7 AC1 30 HOH A 531 HOH A 607 HOH A 620 HOH A 671 SITE 8 AC1 30 HOH A 759 HOH A 768 SITE 1 AC2 5 THR A 23 GCP A 417 HOH A 432 HOH A 485 SITE 2 AC2 5 HOH A 768 SITE 1 AC3 6 VAL A 151 VAL A 154 TRP A 327 ASN A 328 SITE 2 AC3 6 HOH A 492 HOH A 761 SITE 1 AC4 6 VAL A 323 HOH A 435 HOH A 436 HOH A 437 SITE 2 AC4 6 HOH A 438 HOH A 879 SITE 1 AC5 7 GLN A 168 PHE A 169 LYS A 171 MG A 429 SITE 2 AC5 7 HOH A 439 HOH A 450 HOH A 790 SITE 1 AC6 7 MET A 111 HOH A 443 HOH A 444 HOH A 446 SITE 2 AC6 7 HOH A 473 HOH A 751 HOH A 878 SITE 1 AC7 6 THR A 54 THR A 70 HOH A 469 HOH A 802 SITE 2 AC7 6 HOH A 844 HOH A 885 SITE 1 AC8 5 GLU A 66 TYR A 68 ASP A 192 HOH A 447 SITE 2 AC8 5 HOH A 448 SITE 1 AC9 6 THR A 34 SER A 35 LYS A 36 TYR A 51 SITE 2 AC9 6 HOH A 858 HOH A 898 SITE 1 BC1 5 GLN A 251 GLU A 252 GLU A 344 MET A 345 SITE 2 BC1 5 HOH A 491 SITE 1 BC2 6 LEU A 312 SER A 364 THR A 365 ARG A 384 SITE 2 BC2 6 HOH A 517 HOH A 881 SITE 1 BC3 6 ARG A 130 VAL A 340 HOH A 735 HOH A 806 SITE 2 BC3 6 HOH A 847 HOH A 895 SITE 1 BC4 10 ASP A 152 VAL A 153 HIS A 187 PRO A 324 SITE 2 BC4 10 LEU A 326 GCP A 417 HOH A 437 HOH A 457 SITE 3 BC4 10 HOH A 525 HOH A 879 SITE 1 BC5 11 VAL A 223 LYS A 234 SER A 278 ARG A 280 SITE 2 BC5 11 GLY A 282 ALA A 296 GLY A 298 HOH A 474 SITE 3 BC5 11 HOH A 701 HOH A 827 HOH A 903 SITE 1 BC6 8 MG A 419 MG A 430 HOH A 439 HOH A 440 SITE 2 BC6 8 HOH A 451 HOH A 486 HOH A 790 HOH A 801 SITE 1 BC7 7 MG A 429 HOH A 486 HOH A 487 HOH A 488 SITE 2 BC7 7 HOH A 647 HOH A 735 HOH A 801 CRYST1 186.891 186.891 186.891 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005351 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005351 0.00000