HEADER GRISEOLUTEATE-BINDING PROTEIN 22-JUN-11 3SK1 TITLE CRYSTAL STRUCTURE OF PHENAZINE RESISTANCE PROTEIN EHPR FROM TITLE 2 ENTEROBACTER AGGLOMERANS (ERWINIA HERBICOLA, PANTOEA AGGLOMERANS) TITLE 3 EH1087, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EHPR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PANTOEA AGGLOMERANS; SOURCE 3 ORGANISM_COMMON: ERWINIA HERBICOLA; SOURCE 4 ORGANISM_TAXID: 549; SOURCE 5 STRAIN: EH1087; SOURCE 6 GENE: EHPR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYS(S); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ANTIBIOTIC RESISTANCE, GRISEOLUTEATE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.BLANKENFELDT,S.YU REVDAT 2 28-FEB-24 3SK1 1 SEQADV REVDAT 1 31-AUG-11 3SK1 0 JRNL AUTH S.YU,A.VIT,S.DEVENISH,H.K.MAHANTY,A.ITZEN,R.S.GOODY, JRNL AUTH 2 W.BLANKENFELDT JRNL TITL ATOMIC RESOLUTION STRUCTURE OF EHPR: PHENAZINE RESISTANCE IN JRNL TITL 2 ENTEROBACTER AGGLOMERANS EH1087 FOLLOWS PRINCIPLES OF JRNL TITL 3 BLEOMYCIN / MITOMYCIN C RESISTANCE IN OTHER BACTERIA. JRNL REF BMC STRUCT.BIOL. V. 11 33 2011 JRNL REFN ESSN 1472-6807 JRNL PMID 21849072 JRNL DOI 10.1186/1472-6807-11-33 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 26266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1708 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : 1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4041 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2735 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5525 ; 1.733 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6651 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 6.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;37.177 ;23.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 609 ;15.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4479 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 864 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2475 ; 0.945 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 971 ; 0.235 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4072 ; 1.628 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1566 ; 2.486 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1452 ; 3.790 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0751 76.2642 29.6353 REMARK 3 T TENSOR REMARK 3 T11: 0.1677 T22: 0.2103 REMARK 3 T33: 0.1709 T12: -0.0587 REMARK 3 T13: 0.0112 T23: 0.1199 REMARK 3 L TENSOR REMARK 3 L11: 6.1441 L22: 7.2327 REMARK 3 L33: 2.6915 L12: 0.9925 REMARK 3 L13: 0.2700 L23: 1.5178 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: -0.8189 S13: -0.5214 REMARK 3 S21: 0.9749 S22: -0.1936 S23: 0.0455 REMARK 3 S31: 0.2630 S32: -0.1717 S33: 0.0665 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): 42.6850 84.3236 12.8388 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1572 REMARK 3 T33: 0.1005 T12: 0.0474 REMARK 3 T13: -0.0394 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 6.6696 L22: 9.0411 REMARK 3 L33: 3.4774 L12: -0.0586 REMARK 3 L13: 0.6564 L23: 0.3176 REMARK 3 S TENSOR REMARK 3 S11: 0.1482 S12: 0.6807 S13: 0.2260 REMARK 3 S21: -1.0963 S22: -0.1483 S23: 0.2573 REMARK 3 S31: -0.0793 S32: -0.2299 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 129 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7469 68.6213 20.4026 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.0775 REMARK 3 T33: 0.1188 T12: 0.0455 REMARK 3 T13: -0.0123 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.1166 L22: 7.9606 REMARK 3 L33: 3.7332 L12: -0.4701 REMARK 3 L13: -0.0180 L23: 0.5148 REMARK 3 S TENSOR REMARK 3 S11: 0.1022 S12: 0.1151 S13: -0.2241 REMARK 3 S21: -0.1428 S22: -0.0559 S23: -0.0457 REMARK 3 S31: 0.4231 S32: 0.1930 S33: -0.0463 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 129 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9972 87.2807 22.1206 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.0660 REMARK 3 T33: 0.1139 T12: -0.0255 REMARK 3 T13: -0.0105 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: 4.4414 L22: 7.5171 REMARK 3 L33: 3.2393 L12: -0.3468 REMARK 3 L13: 1.5267 L23: 0.1655 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: 0.3635 S13: 0.3734 REMARK 3 S21: 0.0172 S22: -0.1113 S23: -0.1055 REMARK 3 S31: -0.5750 S32: 0.2184 S33: 0.1430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 35.9000 REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-CITRATE, 0.2 M AMMONIUM REMARK 280 ACETATE, 27-30% (W/V) PEG 4000, PH 5.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.28000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 ASP A 129 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 PRO B 7 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 LEU C 4 REMARK 465 ALA C 5 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASP D 3 REMARK 465 LEU D 4 REMARK 465 ALA D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 LYS A 85 CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS B 85 CD CE NZ REMARK 470 ASN B 88 CG OD1 ND2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 LYS B 94 CD CE NZ REMARK 470 GLN B 97 CG CD OE1 NE2 REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 LYS C 85 CD CE NZ REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 LYS C 102 CE NZ REMARK 470 LYS D 34 CD CE NZ REMARK 470 GLU D 81 CG CD OE1 OE2 REMARK 470 LYS D 92 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG D 23 CA CB CG CD NE CZ NH1 REMARK 480 ARG D 23 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 48 -144.98 -120.05 REMARK 500 ALA A 65 -63.77 -20.20 REMARK 500 ILE B 9 86.50 84.19 REMARK 500 SER B 48 -146.33 -124.20 REMARK 500 SER C 48 -151.00 -107.96 REMARK 500 ASP C 107 -155.09 -113.47 REMARK 500 PRO D 104 129.89 -38.83 REMARK 500 ASP D 107 -158.96 -117.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 3SK1 A 1 129 UNP Q8GPH6 Q8GPH6_ENTAG 1 129 DBREF 3SK1 B 1 129 UNP Q8GPH6 Q8GPH6_ENTAG 1 129 DBREF 3SK1 C 1 129 UNP Q8GPH6 Q8GPH6_ENTAG 1 129 DBREF 3SK1 D 1 129 UNP Q8GPH6 Q8GPH6_ENTAG 1 129 SEQADV 3SK1 GLY A -2 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 SER A -1 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 HIS A 0 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 GLY B -2 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 SER B -1 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 HIS B 0 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 GLY C -2 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 SER C -1 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 HIS C 0 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 GLY D -2 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 SER D -1 UNP Q8GPH6 EXPRESSION TAG SEQADV 3SK1 HIS D 0 UNP Q8GPH6 EXPRESSION TAG SEQRES 1 A 132 GLY SER HIS MET THR ASP LEU ALA GLY PRO THR ILE THR SEQRES 2 A 132 PRO ASN LEU GLN LEU VAL TYR VAL SER ASN VAL GLU ARG SEQRES 3 A 132 SER THR ASP PHE TYR ARG PHE ILE PHE LYS LYS GLU PRO SEQRES 4 A 132 VAL PHE VAL THR PRO ARG TYR VAL ALA PHE PRO SER SER SEQRES 5 A 132 GLY ASP ALA LEU PHE ALA ILE TRP SER GLY GLY GLU GLU SEQRES 6 A 132 PRO VAL ALA GLU ILE PRO ARG PHE SER GLU ILE GLY ILE SEQRES 7 A 132 MET LEU PRO THR GLY GLU ASP VAL ASP LYS LEU PHE ASN SEQRES 8 A 132 GLU TRP THR LYS GLN LYS SER HIS GLN ILE ILE VAL ILE SEQRES 9 A 132 LYS GLU PRO TYR THR ASP VAL PHE GLY ARG THR PHE LEU SEQRES 10 A 132 ILE SER ASP PRO ASP GLY HIS ILE ILE ARG VAL CYS PRO SEQRES 11 A 132 LEU ASP SEQRES 1 B 132 GLY SER HIS MET THR ASP LEU ALA GLY PRO THR ILE THR SEQRES 2 B 132 PRO ASN LEU GLN LEU VAL TYR VAL SER ASN VAL GLU ARG SEQRES 3 B 132 SER THR ASP PHE TYR ARG PHE ILE PHE LYS LYS GLU PRO SEQRES 4 B 132 VAL PHE VAL THR PRO ARG TYR VAL ALA PHE PRO SER SER SEQRES 5 B 132 GLY ASP ALA LEU PHE ALA ILE TRP SER GLY GLY GLU GLU SEQRES 6 B 132 PRO VAL ALA GLU ILE PRO ARG PHE SER GLU ILE GLY ILE SEQRES 7 B 132 MET LEU PRO THR GLY GLU ASP VAL ASP LYS LEU PHE ASN SEQRES 8 B 132 GLU TRP THR LYS GLN LYS SER HIS GLN ILE ILE VAL ILE SEQRES 9 B 132 LYS GLU PRO TYR THR ASP VAL PHE GLY ARG THR PHE LEU SEQRES 10 B 132 ILE SER ASP PRO ASP GLY HIS ILE ILE ARG VAL CYS PRO SEQRES 11 B 132 LEU ASP SEQRES 1 C 132 GLY SER HIS MET THR ASP LEU ALA GLY PRO THR ILE THR SEQRES 2 C 132 PRO ASN LEU GLN LEU VAL TYR VAL SER ASN VAL GLU ARG SEQRES 3 C 132 SER THR ASP PHE TYR ARG PHE ILE PHE LYS LYS GLU PRO SEQRES 4 C 132 VAL PHE VAL THR PRO ARG TYR VAL ALA PHE PRO SER SER SEQRES 5 C 132 GLY ASP ALA LEU PHE ALA ILE TRP SER GLY GLY GLU GLU SEQRES 6 C 132 PRO VAL ALA GLU ILE PRO ARG PHE SER GLU ILE GLY ILE SEQRES 7 C 132 MET LEU PRO THR GLY GLU ASP VAL ASP LYS LEU PHE ASN SEQRES 8 C 132 GLU TRP THR LYS GLN LYS SER HIS GLN ILE ILE VAL ILE SEQRES 9 C 132 LYS GLU PRO TYR THR ASP VAL PHE GLY ARG THR PHE LEU SEQRES 10 C 132 ILE SER ASP PRO ASP GLY HIS ILE ILE ARG VAL CYS PRO SEQRES 11 C 132 LEU ASP SEQRES 1 D 132 GLY SER HIS MET THR ASP LEU ALA GLY PRO THR ILE THR SEQRES 2 D 132 PRO ASN LEU GLN LEU VAL TYR VAL SER ASN VAL GLU ARG SEQRES 3 D 132 SER THR ASP PHE TYR ARG PHE ILE PHE LYS LYS GLU PRO SEQRES 4 D 132 VAL PHE VAL THR PRO ARG TYR VAL ALA PHE PRO SER SER SEQRES 5 D 132 GLY ASP ALA LEU PHE ALA ILE TRP SER GLY GLY GLU GLU SEQRES 6 D 132 PRO VAL ALA GLU ILE PRO ARG PHE SER GLU ILE GLY ILE SEQRES 7 D 132 MET LEU PRO THR GLY GLU ASP VAL ASP LYS LEU PHE ASN SEQRES 8 D 132 GLU TRP THR LYS GLN LYS SER HIS GLN ILE ILE VAL ILE SEQRES 9 D 132 LYS GLU PRO TYR THR ASP VAL PHE GLY ARG THR PHE LEU SEQRES 10 D 132 ILE SER ASP PRO ASP GLY HIS ILE ILE ARG VAL CYS PRO SEQRES 11 D 132 LEU ASP FORMUL 5 HOH *66(H2 O) HELIX 1 1 ASN A 20 LYS A 33 1 14 HELIX 2 2 THR A 79 GLN A 93 1 15 HELIX 3 3 ASN B 20 LYS B 33 1 14 HELIX 4 4 THR B 79 GLN B 93 1 15 HELIX 5 5 ASN C 20 LYS C 33 1 14 HELIX 6 6 THR C 79 GLN C 93 1 15 HELIX 7 7 ASN D 20 LYS D 33 1 14 HELIX 8 8 THR D 79 GLN D 93 1 15 SHEET 1 A 8 PHE A 38 VAL A 39 0 SHEET 2 A 8 TYR A 43 PRO A 47 -1 O ALA A 45 N PHE A 38 SHEET 3 A 8 LEU A 53 TRP A 57 -1 O PHE A 54 N PHE A 46 SHEET 4 A 8 LEU A 13 TYR A 17 1 N VAL A 16 O ALA A 55 SHEET 5 A 8 SER B 71 LEU B 77 -1 O GLU B 72 N LEU A 15 SHEET 6 A 8 ILE B 122 PRO B 127 1 O ILE B 122 N ILE B 73 SHEET 7 A 8 ARG B 111 SER B 116 -1 N ILE B 115 O ILE B 123 SHEET 8 A 8 ILE B 99 THR B 106 -1 N ILE B 101 O LEU B 114 SHEET 1 B 8 ILE A 99 ASP A 107 0 SHEET 2 B 8 GLY A 110 SER A 116 -1 O THR A 112 N TYR A 105 SHEET 3 B 8 ILE A 122 PRO A 127 -1 O ILE A 123 N ILE A 115 SHEET 4 B 8 SER A 71 LEU A 77 1 N ILE A 75 O ARG A 124 SHEET 5 B 8 LEU B 13 TYR B 17 -1 O LEU B 13 N GLY A 74 SHEET 6 B 8 LEU B 53 TRP B 57 1 O ALA B 55 N VAL B 16 SHEET 7 B 8 TYR B 43 PRO B 47 -1 N PHE B 46 O PHE B 54 SHEET 8 B 8 PHE B 38 VAL B 39 -1 N PHE B 38 O ALA B 45 SHEET 1 C 8 PHE C 38 VAL C 39 0 SHEET 2 C 8 TYR C 43 PRO C 47 -1 O ALA C 45 N PHE C 38 SHEET 3 C 8 LEU C 53 TRP C 57 -1 O PHE C 54 N PHE C 46 SHEET 4 C 8 LEU C 13 TYR C 17 1 N VAL C 16 O ALA C 55 SHEET 5 C 8 SER D 71 LEU D 77 -1 O GLY D 74 N LEU C 13 SHEET 6 C 8 ILE D 122 PRO D 127 1 O CYS D 126 N LEU D 77 SHEET 7 C 8 ARG D 111 SER D 116 -1 N ILE D 115 O ILE D 123 SHEET 8 C 8 ILE D 99 THR D 106 -1 N TYR D 105 O THR D 112 SHEET 1 D 8 ILE C 99 THR C 106 0 SHEET 2 D 8 ARG C 111 SER C 116 -1 O THR C 112 N TYR C 105 SHEET 3 D 8 ILE C 122 PRO C 127 -1 O ILE C 123 N ILE C 115 SHEET 4 D 8 SER C 71 LEU C 77 1 N ILE C 75 O ARG C 124 SHEET 5 D 8 LEU D 13 TYR D 17 -1 O LEU D 13 N GLY C 74 SHEET 6 D 8 LEU D 53 TRP D 57 1 O ALA D 55 N VAL D 16 SHEET 7 D 8 TYR D 43 PRO D 47 -1 N PHE D 46 O PHE D 54 SHEET 8 D 8 PHE D 38 VAL D 39 -1 N PHE D 38 O ALA D 45 CRYST1 72.560 79.340 87.940 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013782 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011371 0.00000