HEADER RNA 22-JUN-11 3SKI TITLE CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- TITLE 2 DEOXYGUANOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (68-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (68-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIBED RNA; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: IN VITRO TRANSCRIBED RNA KEYWDS THREE-WAY JUNCTION, RIBOSWITCH, DEOXYGUANOSINE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV REVDAT 3 28-FEB-24 3SKI 1 REMARK LINK REVDAT 2 26-OCT-11 3SKI 1 JRNL REVDAT 1 17-AUG-11 3SKI 0 JRNL AUTH O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV JRNL TITL STRUCTURAL PRINCIPLES OF NUCLEOSIDE SELECTIVITY IN A JRNL TITL 2 2'-DEOXYGUANOSINE RIBOSWITCH. JRNL REF NAT.CHEM.BIOL. V. 7 748 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 21841796 JRNL DOI 10.1038/NCHEMBIO.631 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 14911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1678 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1021 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2903 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3324 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5167 ; 0.983 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1432 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1167 ; 0.141 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2012 ; 0.267 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 30 REMARK 3 RESIDUE RANGE : A 81 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6850 0.8200 -71.0300 REMARK 3 T TENSOR REMARK 3 T11: -0.0479 T22: -0.2088 REMARK 3 T33: -0.0433 T12: 0.0393 REMARK 3 T13: -0.0655 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 2.8795 L22: 6.0832 REMARK 3 L33: 1.9736 L12: 0.6804 REMARK 3 L13: -0.1266 L23: 3.3841 REMARK 3 S TENSOR REMARK 3 S11: 0.3311 S12: 0.6550 S13: -0.2070 REMARK 3 S21: -0.0445 S22: 0.2055 S23: -0.1763 REMARK 3 S31: 0.0948 S32: 0.2804 S33: -0.5366 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 120 REMARK 3 RESIDUE RANGE : A 31 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3510 3.6970 -42.7560 REMARK 3 T TENSOR REMARK 3 T11: -0.1284 T22: -0.3713 REMARK 3 T33: -0.0507 T12: -0.0832 REMARK 3 T13: 0.0051 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.2661 L22: 0.1322 REMARK 3 L33: 5.2996 L12: -0.3860 REMARK 3 L13: -1.8066 L23: 0.3522 REMARK 3 S TENSOR REMARK 3 S11: -0.1173 S12: 0.0060 S13: 0.0303 REMARK 3 S21: -0.0147 S22: 0.1218 S23: 0.0139 REMARK 3 S31: 0.2250 S32: -0.3219 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5830 -0.6650 -42.4610 REMARK 3 T TENSOR REMARK 3 T11: -0.1179 T22: -0.1607 REMARK 3 T33: -0.1033 T12: -0.0589 REMARK 3 T13: 0.0143 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 2.2288 L22: 1.2453 REMARK 3 L33: 2.4269 L12: -0.7278 REMARK 3 L13: 0.0303 L23: 0.7949 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.3104 S13: -0.1283 REMARK 3 S21: -0.2036 S22: 0.3427 S23: 0.0818 REMARK 3 S31: -0.1635 S32: 0.5471 S33: -0.2687 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 30 REMARK 3 RESIDUE RANGE : B 81 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9110 0.0390 24.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.4151 T22: 0.2419 REMARK 3 T33: -0.1289 T12: -0.0440 REMARK 3 T13: -0.0569 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 3.9118 L22: 5.2935 REMARK 3 L33: 18.5109 L12: 0.7056 REMARK 3 L13: 3.4110 L23: 5.3826 REMARK 3 S TENSOR REMARK 3 S11: 0.8536 S12: 0.6486 S13: 0.2399 REMARK 3 S21: -0.1163 S22: 0.1144 S23: -0.3147 REMARK 3 S31: 2.3736 S32: -0.5355 S33: -0.9680 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 120 B 120 REMARK 3 RESIDUE RANGE : B 31 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0260 -1.7460 -3.5660 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: -0.0408 REMARK 3 T33: -0.0601 T12: -0.0636 REMARK 3 T13: 0.0237 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.8171 L22: 2.3790 REMARK 3 L33: 9.7111 L12: 0.6493 REMARK 3 L13: 2.8087 L23: -0.4020 REMARK 3 S TENSOR REMARK 3 S11: 0.3411 S12: -0.5201 S13: 0.0722 REMARK 3 S21: 0.6086 S22: -0.0426 S23: -0.0383 REMARK 3 S31: 0.5862 S32: -0.6287 S33: -0.2985 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 80 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6830 3.1970 -3.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.2538 T22: 0.0797 REMARK 3 T33: -0.0564 T12: -0.0235 REMARK 3 T13: 0.0964 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 5.5962 L22: 1.4716 REMARK 3 L33: 0.1431 L12: -0.0382 REMARK 3 L13: -0.7230 L23: -0.2654 REMARK 3 S TENSOR REMARK 3 S11: 0.4406 S12: -0.6005 S13: -0.0438 REMARK 3 S21: 0.6609 S22: 0.0380 S23: 0.0264 REMARK 3 S31: -0.1261 S32: 0.7141 S33: -0.4786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.080901 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M NA-ACETATE OR NA-SUCCINATE, PH REMARK 280 4.7-5.1, ~3.0 M AMMONIUM SULFATE, 0.5 MM SPERMINE AND 20 MM REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.46500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.14050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.89750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.14050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.46500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.89750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNG A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNG B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SKI RELATED DB: PDB REMARK 900 RELATED ID: 3SKZ RELATED DB: PDB REMARK 900 RELATED ID: 3SLQ RELATED DB: PDB REMARK 900 RELATED ID: 3SLM RELATED DB: PDB REMARK 900 RELATED ID: 3SKL RELATED DB: PDB REMARK 900 RELATED ID: 3SKW RELATED DB: PDB REMARK 900 RELATED ID: 3SKT RELATED DB: PDB REMARK 900 RELATED ID: 3SKR RELATED DB: PDB DBREF 3SKI A 22 89 PDB 3SKI 3SKI 22 89 DBREF 3SKI B 22 89 PDB 3SKI 3SKI 22 89 SEQRES 1 A 68 GTP G C C U U A U A C A G G SEQRES 2 A 68 G U A G C A U A A U G G G SEQRES 3 A 68 C U A C U G A C C C C G C SEQRES 4 A 68 C U U C A A A C C U A U U SEQRES 5 A 68 U G G A G A C U A U A A G SEQRES 6 A 68 G U CCC SEQRES 1 B 68 G G C C U U A U A C A G G SEQRES 2 B 68 G U A G C A U A A U G G G SEQRES 3 B 68 C U A C U G A C C C C G C SEQRES 4 B 68 C U U C A A A C C U A U U SEQRES 5 B 68 U G G A G A C U A U A A G SEQRES 6 B 68 G U CCC MODRES 3SKI GTP A 22 G GUANOSINE-5'-TRIPHOSPHATE MODRES 3SKI CCC A 89 C MODRES 3SKI CCC B 89 C HET GTP A 22 32 HET CCC A 89 23 HET CCC B 89 23 HET GNG A 120 19 HET MG A 201 1 HET MG A 204 1 HET MG A 228 1 HET SIN A 301 8 HET SO4 A 211 5 HET SO4 A 212 5 HET SO4 A 213 5 HET SO4 A 216 5 HET SO4 A 229 5 HET GNG B 120 19 HET MG B 206 1 HET SO4 B 214 5 HET SO4 B 217 5 HET SO4 B 219 5 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM GNG 2'-DEOXY-GUANOSINE HETNAM MG MAGNESIUM ION HETNAM SIN SUCCINIC ACID HETNAM SO4 SULFATE ION FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 1 CCC 2(C9 H13 N3 O10 P2) FORMUL 3 GNG 2(C10 H13 N5 O4) FORMUL 4 MG 4(MG 2+) FORMUL 7 SIN C4 H6 O4 FORMUL 8 SO4 8(O4 S 2-) FORMUL 18 HOH *111(H2 O) LINK O3' GTP A 22 P G A 23 1555 1555 1.60 LINK O3' U A 88 P CCC A 89 1555 1555 1.60 LINK O3' U B 88 P CCC B 89 1555 1555 1.60 SITE 1 AC1 12 HOH A 4 A A 30 C A 31 C A 56 SITE 2 AC1 12 C A 57 C A 58 G A 59 C A 80 SITE 3 AC1 12 U A 81 A A 82 HOH A 117 HOH A 145 SITE 1 AC2 9 A B 30 C B 31 C B 55 C B 56 SITE 2 AC2 9 C B 57 C B 58 G B 59 C B 80 SITE 3 AC2 9 U B 81 SITE 1 AC3 5 HOH A 15 A A 30 C A 31 A A 32 SITE 2 AC3 5 G A 53 SITE 1 AC4 2 A B 67 HOH B 99 SITE 1 AC5 2 C A 58 G A 59 SITE 1 AC6 1 C A 57 SITE 1 AC7 3 C A 24 C A 25 HOH A 123 SITE 1 AC8 3 C A 64 A A 65 HOH A 130 SITE 1 AC9 5 A A 30 A A 79 C A 80 HOH A 92 SITE 2 AC9 5 HOH A 114 SITE 1 BC1 2 C B 24 C B 25 SITE 1 BC2 4 C A 39 A A 40 U A 41 HOH A 151 SITE 1 BC3 3 U B 63 C B 64 A B 65 SITE 1 BC4 2 C B 39 A B 40 SITE 1 BC5 1 C A 68 CRYST1 34.930 47.795 228.281 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004381 0.00000 HETATM 1 PG GTP A 22 -10.042 1.053 -77.347 1.00 54.37 P ANISOU 1 PG GTP A 22 7245 6212 7202 856 -1492 -368 P HETATM 2 O1G GTP A 22 -10.386 2.020 -76.232 1.00 53.05 O ANISOU 2 O1G GTP A 22 7059 5835 7262 780 -1340 -204 O HETATM 3 O2G GTP A 22 -9.246 -0.110 -76.792 1.00 53.02 O ANISOU 3 O2G GTP A 22 7027 6034 7083 776 -1401 -536 O HETATM 4 O3G GTP A 22 -9.212 1.759 -78.394 1.00 55.90 O ANISOU 4 O3G GTP A 22 7638 6599 7004 888 -1459 -242 O HETATM 5 O3B GTP A 22 -11.422 0.535 -78.011 1.00 54.98 O ANISOU 5 O3B GTP A 22 7185 6288 7418 981 -1786 -531 O HETATM 6 PB GTP A 22 -12.644 -0.019 -77.111 1.00 53.21 P ANISOU 6 PB GTP A 22 6732 5832 7652 939 -1809 -696 P HETATM 7 O1B GTP A 22 -13.688 -0.648 -78.005 1.00 55.46 O ANISOU 7 O1B GTP A 22 6865 6173 8033 1071 -2104 -925 O HETATM 8 O2B GTP A 22 -13.251 1.079 -76.264 1.00 52.78 O ANISOU 8 O2B GTP A 22 6640 5578 7838 889 -1700 -554 O HETATM 9 O3A GTP A 22 -11.948 -1.159 -76.211 1.00 49.10 O ANISOU 9 O3A GTP A 22 6209 5234 7213 800 -1628 -809 O HETATM 10 PA GTP A 22 -12.375 -1.433 -74.683 1.00 45.72 P ANISOU 10 PA GTP A 22 5741 4516 7115 633 -1423 -836 P HETATM 11 O1A GTP A 22 -13.876 -1.324 -74.532 1.00 47.23 O ANISOU 11 O1A GTP A 22 5742 4549 7653 628 -1471 -964 O HETATM 12 O2A GTP A 22 -11.663 -0.502 -73.736 1.00 43.87 O ANISOU 12 O2A GTP A 22 5645 4203 6819 534 -1206 -615 O HETATM 13 O5' GTP A 22 -11.904 -2.954 -74.445 1.00 43.65 O ANISOU 13 O5' GTP A 22 5498 4212 6874 582 -1418 -1015 O HETATM 14 C5' GTP A 22 -12.850 -3.996 -74.341 1.00 41.62 C ANISOU 14 C5' GTP A 22 5112 3817 6885 545 -1458 -1245 C HETATM 15 C4' GTP A 22 -12.282 -5.301 -74.889 1.00 39.80 C ANISOU 15 C4' GTP A 22 4875 3672 6575 593 -1571 -1424 C HETATM 16 O4' GTP A 22 -12.097 -5.233 -76.284 1.00 40.16 O ANISOU 16 O4' GTP A 22 4851 4003 6405 748 -1775 -1493 O HETATM 17 C3' GTP A 22 -10.897 -5.620 -74.369 1.00 37.69 C ANISOU 17 C3' GTP A 22 4785 3392 6142 558 -1497 -1338 C HETATM 18 O3' GTP A 22 -10.924 -6.181 -73.073 1.00 37.01 O ANISOU 18 O3' GTP A 22 4833 3010 6219 419 -1359 -1321 O HETATM 19 C2' GTP A 22 -10.303 -6.566 -75.406 1.00 37.98 C ANISOU 19 C2' GTP A 22 4753 3615 6064 662 -1660 -1534 C HETATM 20 O2' GTP A 22 -10.816 -7.872 -75.243 1.00 38.14 O ANISOU 20 O2' GTP A 22 4705 3471 6314 628 -1702 -1747 O HETATM 21 C1' GTP A 22 -10.912 -5.928 -76.653 1.00 38.63 C ANISOU 21 C1' GTP A 22 4722 3936 6018 774 -1799 -1558 C HETATM 22 N9 GTP A 22 -9.913 -5.005 -77.236 1.00 36.87 N ANISOU 22 N9 GTP A 22 4609 3936 5462 822 -1774 -1404 N HETATM 23 C8 GTP A 22 -9.963 -3.632 -77.231 1.00 36.29 C ANISOU 23 C8 GTP A 22 4621 3902 5264 827 -1709 -1169 C HETATM 24 N7 GTP A 22 -8.857 -3.154 -77.847 1.00 35.89 N ANISOU 24 N7 GTP A 22 4680 4047 4910 844 -1653 -1101 N HETATM 25 C5 GTP A 22 -8.097 -4.202 -78.242 1.00 36.00 C ANISOU 25 C5 GTP A 22 4653 4157 4870 852 -1684 -1314 C HETATM 26 C6 GTP A 22 -6.876 -4.279 -78.908 1.00 35.93 C ANISOU 26 C6 GTP A 22 4685 4338 4628 848 -1617 -1403 C HETATM 27 O6 GTP A 22 -6.289 -3.256 -79.250 1.00 35.74 O ANISOU 27 O6 GTP A 22 4780 4425 4374 821 -1487 -1260 O HETATM 28 N1 GTP A 22 -6.326 -5.514 -79.185 1.00 36.05 N ANISOU 28 N1 GTP A 22 4599 4397 4701 861 -1675 -1678 N HETATM 29 C2 GTP A 22 -6.982 -6.669 -78.801 1.00 36.49 C ANISOU 29 C2 GTP A 22 4542 4296 5026 880 -1803 -1833 C HETATM 30 N2 GTP A 22 -6.445 -7.857 -79.071 1.00 36.69 N ANISOU 30 N2 GTP A 22 4468 4340 5133 900 -1868 -2100 N HETATM 31 N3 GTP A 22 -8.197 -6.586 -78.139 1.00 36.16 N ANISOU 31 N3 GTP A 22 4484 4060 5195 866 -1839 -1734 N HETATM 32 C4 GTP A 22 -8.748 -5.372 -77.864 1.00 36.30 C ANISOU 32 C4 GTP A 22 4572 4046 5176 851 -1778 -1494 C