HEADER HYDROLASE 23-JUN-11 3SKS TITLE CRYSTAL STRUCTURE OF A PUTATIVE OLIGOENDOPEPTIDASE F FROM BACILLUS TITLE 2 ANTHRACIS STR. AMES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OLIGOENDOPEPTIDASE F; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX, ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 198094; SOURCE 5 STRAIN: AMES; SOURCE 6 GENE: BAS1254, BA_1353, GBAA_1353; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, OLIGOENDOPEPTIDASE, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WAJEROWICZ,O.ONOPRIYENKO,P.POREBSKI,M.DOMAGALSKI,M.CHRUSZCZ, AUTHOR 2 A.SAVCHENKO,W.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 4 13-SEP-23 3SKS 1 REMARK REVDAT 3 13-APR-22 3SKS 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 08-NOV-17 3SKS 1 REMARK REVDAT 1 06-JUL-11 3SKS 0 JRNL AUTH W.WAJEROWICZ,O.ONOPRIYENKO,P.POREBSKI,M.DOMAGALSKI, JRNL AUTH 2 M.CHRUSZCZ,A.SAVCHENKO,W.ANDERSON,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE OLIGOENDOPEPTIDASE F FROM JRNL TITL 2 BACILLUS ANTHRACIS STR. AMES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4426 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 378 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : -2.19000 REMARK 3 B33 (A**2) : 2.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4567 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3059 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6191 ; 1.493 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7424 ; 0.970 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 5.301 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;35.905 ;24.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 755 ;14.497 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.651 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5146 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 986 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2724 ; 0.844 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1098 ; 0.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4379 ; 1.501 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1843 ; 2.678 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1812 ; 4.319 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 52.5720 94.7000 7.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.1052 REMARK 3 T33: 0.0193 T12: 0.0063 REMARK 3 T13: 0.0234 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 1.6249 L22: 0.8090 REMARK 3 L33: 1.2036 L12: 0.1077 REMARK 3 L13: -0.5520 L23: -0.3122 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.2083 S13: 0.1448 REMARK 3 S21: -0.2782 S22: -0.0142 S23: -0.0126 REMARK 3 S31: -0.1150 S32: -0.0333 S33: -0.0146 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1790 71.7310 14.9640 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.0938 REMARK 3 T33: 0.0206 T12: -0.0100 REMARK 3 T13: -0.0406 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.3262 L22: 0.7920 REMARK 3 L33: 0.6223 L12: -0.0663 REMARK 3 L13: -0.0315 L23: -0.3086 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: 0.0416 S13: -0.0306 REMARK 3 S21: -0.2096 S22: -0.0059 S23: 0.1305 REMARK 3 S31: 0.0745 S32: -0.0053 S33: -0.0735 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9110 72.6630 26.9890 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0834 REMARK 3 T33: 0.0047 T12: -0.0038 REMARK 3 T13: 0.0002 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3531 L22: 1.0422 REMARK 3 L33: 0.3244 L12: 0.0746 REMARK 3 L13: -0.0822 L23: -0.2424 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0045 S13: -0.0114 REMARK 3 S21: -0.0633 S22: 0.0143 S23: 0.0039 REMARK 3 S31: 0.0236 S32: -0.0418 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 483 A 564 REMARK 3 ORIGIN FOR THE GROUP (A): 63.6110 66.7720 22.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.0939 REMARK 3 T33: 0.0687 T12: 0.0348 REMARK 3 T13: 0.0243 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.4687 L22: 2.1483 REMARK 3 L33: 1.4172 L12: -0.4534 REMARK 3 L13: 0.2190 L23: -0.8282 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: 0.0905 S13: -0.0775 REMARK 3 S21: -0.2057 S22: -0.0573 S23: -0.1623 REMARK 3 S31: 0.1203 S32: 0.0414 S33: 0.0315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SKS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : 0.70000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: 3AHN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%PEG 3350,0.2M K DIHYDROGEN REMARK 280 PHOSPHATE, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.99200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.04150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.27550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.04150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.99200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.27550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 460 REMARK 465 ASP A 461 REMARK 465 TYR A 462 REMARK 465 GLU A 463 REMARK 465 ASP A 464 REMARK 465 ASN A 465 REMARK 465 ASP A 466 REMARK 465 TYR A 467 REMARK 465 LEU A 468 REMARK 465 GLU A 469 REMARK 465 ARG A 470 REMARK 465 GLY A 471 REMARK 465 GLY A 472 REMARK 465 PHE A 473 REMARK 465 TRP A 474 REMARK 465 GLN A 475 REMARK 465 ARG A 476 REMARK 465 GLN A 477 REMARK 465 GLY A 478 REMARK 465 HIS A 479 REMARK 465 ILE A 480 REMARK 465 TYR A 481 REMARK 465 SER A 482 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CD OE1 OE2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 LYS A 31 CD CE NZ REMARK 470 LYS A 90 NZ REMARK 470 LYS A 129 CE NZ REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 LYS A 201 CD CE NZ REMARK 470 LYS A 253 NZ REMARK 470 TYR A 380 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 399 CE NZ REMARK 470 GLU A 443 CG CD OE1 OE2 REMARK 470 GLU A 444 CG CD OE1 OE2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 453 CD OE1 OE2 REMARK 470 HIS A 459 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 485 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 486 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 563 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 754 O HOH A 791 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 345 17.60 -145.22 REMARK 500 GLU A 403 -122.45 49.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 568 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 356 NE2 REMARK 620 2 HIS A 360 NE2 104.9 REMARK 620 3 GLU A 384 OE2 141.0 93.5 REMARK 620 4 GLU A 384 OE1 86.3 107.5 55.2 REMARK 620 5 PO4 A 566 O1 105.7 105.5 101.9 140.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 565 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 566 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 567 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 568 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP01133 RELATED DB: TARGETDB DBREF 3SKS A 1 564 UNP Q81TD1 Q81TD1_BACAN 1 564 SEQADV 3SKS SER A -2 UNP Q81TD1 EXPRESSION TAG SEQADV 3SKS ASN A -1 UNP Q81TD1 EXPRESSION TAG SEQADV 3SKS ALA A 0 UNP Q81TD1 EXPRESSION TAG SEQRES 1 A 567 SER ASN ALA MET SER PHE LYS ASP TYR GLU TYR LYS ARG SEQRES 2 A 567 PRO ASN ILE GLU GLU LEU LYS GLU LYS PHE THR VAL ALA SEQRES 3 A 567 LEU GLU LYS PHE ASP ASN ALA LYS THR VAL GLU GLU GLN SEQRES 4 A 567 LYS GLN VAL ILE HIS SER ILE ASN GLU ILE ARG ASN ASP SEQRES 5 A 567 PHE GLY THR MET GLY ASN LEU CYS TYR ILE ARG HIS SER SEQRES 6 A 567 VAL ASP THR THR ASP ALA PHE TYR LYS GLU GLU GLN ASP SEQRES 7 A 567 PHE PHE ASP GLU PHE SER PRO VAL VAL GLN GLY TYR GLY SEQRES 8 A 567 THR LYS TYR TYR ASN ALA LEU ILE HIS SER PRO PHE ARG SEQRES 9 A 567 GLU GLU LEU GLU ALA TYR TYR GLY LYS GLN LEU PHE ALA SEQRES 10 A 567 LEU ALA GLU CYS ASP LEU LYS THR TYR SER ASP GLU VAL SEQRES 11 A 567 VAL LYS ASP LEU GLN LEU GLU ASN LYS LEU SER SER GLN SEQRES 12 A 567 TYR THR GLN LEU LEU ALA SER ALA LYS ILE ASP PHE ALA SEQRES 13 A 567 GLY GLU GLU ARG THR LEU SER GLN LEU ILE PRO PHE MET SEQRES 14 A 567 GLN GLY LYS GLU ARG SER GLU ARG LYS ALA ALA SER GLU SEQRES 15 A 567 ALA TYR TYR GLY PHE LEU ALA GLU ASN GLU GLU GLU LEU SEQRES 16 A 567 ASP ARG ILE TYR ASP GLU LEU VAL LYS VAL ARG THR LYS SEQRES 17 A 567 ILE ALA LYS SER LEU GLY PHE LYS ASN PHE VAL GLU LEU SEQRES 18 A 567 GLY TYR ALA ARG MET TYR ARG THR ASP TYR ASN ALA GLU SEQRES 19 A 567 MET VAL ALA ASN TYR ARG GLN GLN VAL LEU ASP TYR ILE SEQRES 20 A 567 VAL PRO VAL THR THR GLU LEU ARG LYS ARG GLN GLN ALA SEQRES 21 A 567 ARG ILE GLY VAL GLU LYS LEU ALA TYR TYR ASP GLU ASN SEQRES 22 A 567 PHE GLU PHE PRO THR GLY ASN PRO THR PRO LYS GLY ASP SEQRES 23 A 567 ALA ASP TRP ILE VAL ASN HIS GLY LYS THR MET TYR LYS SEQRES 24 A 567 GLU LEU SER ALA GLU THR ASP GLU PHE PHE ASN PHE MET SEQRES 25 A 567 LEU ASP ASN ASP LEU LEU ASP LEU VAL ALA LYS LYS GLY SEQRES 26 A 567 LYS ALA GLY GLY GLY TYR CYS THR TYR ILE GLU ASN TYR SEQRES 27 A 567 LYS ALA PRO PHE ILE PHE SER ASN PHE ASN GLY THR SER SEQRES 28 A 567 GLY ASP ILE ASP VAL LEU THR HIS GLU ALA GLY HIS ALA SEQRES 29 A 567 PHE GLN VAL TYR GLU SER ARG LYS PHE GLU ILE PRO GLU SEQRES 30 A 567 TYR ASN TRP PRO THR TYR GLU ALA CYS GLU ILE HIS SER SEQRES 31 A 567 MET SER MET GLU PHE PHE THR TRP PRO TRP MET LYS LEU SEQRES 32 A 567 PHE PHE GLU GLU ASP ALA ASP LYS TYR TYR PHE SER HIS SEQRES 33 A 567 LEU SER SER ALA LEU LEU PHE LEU PRO TYR GLY VAL SER SEQRES 34 A 567 VAL ASP GLU TYR GLN HIS TYR VAL TYR GLU ASN PRO GLU SEQRES 35 A 567 ALA SER PRO GLU GLU ARG LYS THR ALA TRP ARG ASN ILE SEQRES 36 A 567 GLU LYS LYS TYR LEU PRO HIS ARG ASP TYR GLU ASP ASN SEQRES 37 A 567 ASP TYR LEU GLU ARG GLY GLY PHE TRP GLN ARG GLN GLY SEQRES 38 A 567 HIS ILE TYR SER SER PRO PHE TYR TYR ILE ASP TYR THR SEQRES 39 A 567 LEU ALA GLN ILE CYS ALA LEU GLN PHE TRP LYS ARG ALA SEQRES 40 A 567 ARG ASP ASN ARG GLN GLU ALA TRP GLU ASP TYR VAL ASN SEQRES 41 A 567 LEU CYS GLN GLN GLY GLY SER LYS SER PHE LEU GLU LEU SEQRES 42 A 567 VAL GLU VAL ALA ASN LEU THR SER PRO PHE ALA GLU GLY SEQRES 43 A 567 CYS VAL LYS SER VAL ILE THR GLU ILE GLU ALA TRP LEU SEQRES 44 A 567 HIS ALA ILE ASP ASP THR LYS LEU HET PO4 A 565 5 HET PO4 A 566 5 HET PO4 A 567 5 HET ZN A 568 1 HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION FORMUL 2 PO4 3(O4 P 3-) FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *378(H2 O) HELIX 1 1 SER A 2 TYR A 6 5 5 HELIX 2 2 ASN A 12 ALA A 30 1 19 HELIX 3 3 THR A 32 ASP A 64 1 33 HELIX 4 4 ASP A 67 HIS A 97 1 31 HELIX 5 5 PHE A 100 GLY A 109 1 10 HELIX 6 6 GLY A 109 THR A 122 1 14 HELIX 7 7 TYR A 123 GLU A 126 5 4 HELIX 8 8 VAL A 127 SER A 147 1 21 HELIX 9 9 THR A 158 GLN A 167 1 10 HELIX 10 10 GLU A 170 ASN A 188 1 19 HELIX 11 11 ASN A 188 LEU A 210 1 23 HELIX 12 12 ASN A 214 MET A 223 1 10 HELIX 13 13 ASN A 229 ILE A 244 1 16 HELIX 14 14 ILE A 244 ILE A 259 1 16 HELIX 15 15 ASP A 283 SER A 299 1 17 HELIX 16 16 SER A 299 ASN A 312 1 14 HELIX 17 17 GLU A 333 LYS A 336 5 4 HELIX 18 18 SER A 348 SER A 367 1 20 HELIX 19 19 ILE A 372 ASN A 376 5 5 HELIX 20 20 THR A 379 THR A 394 1 16 HELIX 21 21 TRP A 397 GLU A 403 1 7 HELIX 22 22 ASP A 405 ASN A 437 1 33 HELIX 23 23 SER A 441 LEU A 457 1 17 HELIX 24 24 SER A 483 PHE A 485 5 3 HELIX 25 25 TYR A 486 ASN A 507 1 22 HELIX 26 26 ASN A 507 GLN A 521 1 15 HELIX 27 27 SER A 526 ALA A 534 1 9 HELIX 28 28 GLY A 543 ALA A 558 1 16 HELIX 29 29 ILE A 559 LEU A 564 5 6 SHEET 1 A 2 ILE A 150 PHE A 152 0 SHEET 2 A 2 GLU A 155 ARG A 157 -1 O ARG A 157 N ILE A 150 SHEET 1 B 3 LEU A 315 VAL A 318 0 SHEET 2 B 3 ALA A 337 PHE A 344 1 O PHE A 344 N LEU A 317 SHEET 3 B 3 TYR A 328 ILE A 332 -1 N ILE A 332 O ALA A 337 LINK NE2 HIS A 356 ZN ZN A 568 1555 1555 2.09 LINK NE2 HIS A 360 ZN ZN A 568 1555 1555 2.12 LINK OE2 GLU A 384 ZN ZN A 568 1555 1555 2.31 LINK OE1 GLU A 384 ZN ZN A 568 1555 1555 2.36 LINK O1 PO4 A 566 ZN ZN A 568 1555 1555 2.07 SITE 1 AC1 6 ARG A 60 TYR A 70 LYS A 175 HOH A 646 SITE 2 AC1 6 HOH A 661 HOH A 801 SITE 1 AC2 9 GLY A 327 TYR A 328 HIS A 356 GLU A 357 SITE 2 AC2 9 HIS A 360 GLU A 384 TYR A 490 PO4 A 567 SITE 3 AC2 9 ZN A 568 SITE 1 AC3 3 GLY A 326 GLY A 327 PO4 A 566 SITE 1 AC4 4 HIS A 356 HIS A 360 GLU A 384 PO4 A 566 CRYST1 63.984 84.551 116.083 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008615 0.00000