data_3SKZ # _entry.id 3SKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SKZ pdb_00003skz 10.2210/pdb3skz/pdb NDB NA1183 ? ? RCSB RCSB066331 ? ? WWPDB D_1000066331 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-17 2 'Structure model' 1 1 2011-10-26 3 'Structure model' 1 2 2024-02-28 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Source and taxonomy' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_site 6 4 'Structure model' entity 7 4 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 4 'Structure model' '_entity.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SKZ _pdbx_database_status.recvd_initial_deposition_date 2011-06-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SKI . unspecified PDB 3SKT . unspecified PDB 3SKL . unspecified PDB 3SKW . unspecified PDB 3SKR . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pikovskaya, O.' 1 'Polonskaia, A.' 2 'Patel, D.J.' 3 'Serganov, A.' 4 # _citation.id primary _citation.title ;Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. ; _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 7 _citation.page_first 748 _citation.page_last 755 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21841796 _citation.pdbx_database_id_DOI 10.1038/nchembio.631 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pikovskaya, O.' 1 ? primary 'Polonskaia, A.' 2 ? primary 'Patel, D.J.' 3 ? primary 'Serganov, A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (68-MER)' 22018.873 2 ? ? ? 'dG riboswitch' 2 non-polymer syn GUANOSINE 283.241 2 ? ? ? 'in vitro transcribed RNA' 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 8 ? ? ? ? 5 non-polymer syn 'SUCCINIC ACID' 118.088 1 ? ? ? ? 6 water nat water 18.015 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GTP)GCCUUAUACAGGGUAGCAUAAUGGGCUACUGACCCCGCCUUCAAACCUAUUUGGAGACUAUAAGGU(CCC)' _entity_poly.pdbx_seq_one_letter_code_can GGCCUUAUACAGGGUAGCAUAAUGGGCUACUGACCCCGCCUUCAAACCUAUUUGGAGACUAUAAGGUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GUANOSINE GMP 3 'MAGNESIUM ION' MG 4 'SULFATE ION' SO4 5 'SUCCINIC ACID' SIN 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 C n 1 4 C n 1 5 U n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 C n 1 11 A n 1 12 G n 1 13 G n 1 14 G n 1 15 U n 1 16 A n 1 17 G n 1 18 C n 1 19 A n 1 20 U n 1 21 A n 1 22 A n 1 23 U n 1 24 G n 1 25 G n 1 26 G n 1 27 C n 1 28 U n 1 29 A n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 C n 1 35 C n 1 36 C n 1 37 C n 1 38 G n 1 39 C n 1 40 C n 1 41 U n 1 42 U n 1 43 C n 1 44 A n 1 45 A n 1 46 A n 1 47 C n 1 48 C n 1 49 U n 1 50 A n 1 51 U n 1 52 U n 1 53 U n 1 54 G n 1 55 G n 1 56 A n 1 57 G n 1 58 A n 1 59 C n 1 60 U n 1 61 A n 1 62 U n 1 63 A n 1 64 A n 1 65 G n 1 66 G n 1 67 U n 1 68 CCC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'in vitro transcribed RNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GMP non-polymer . GUANOSINE ? 'C10 H13 N5 O5' 283.241 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SIN non-polymer . 'SUCCINIC ACID' ? 'C4 H6 O4' 118.088 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 22 22 GTP GTP A . n A 1 2 G 2 23 23 G G A . n A 1 3 C 3 24 24 C C A . n A 1 4 C 4 25 25 C C A . n A 1 5 U 5 26 26 U U A . n A 1 6 U 6 27 27 U U A . n A 1 7 A 7 28 28 A A A . n A 1 8 U 8 29 29 U U A . n A 1 9 A 9 30 30 A A A . n A 1 10 C 10 31 31 C C A . n A 1 11 A 11 32 32 A A A . n A 1 12 G 12 33 33 G G A . n A 1 13 G 13 34 34 G G A . n A 1 14 G 14 35 35 G G A . n A 1 15 U 15 36 36 U U A . n A 1 16 A 16 37 37 A A A . n A 1 17 G 17 38 38 G G A . n A 1 18 C 18 39 39 C C A . n A 1 19 A 19 40 40 A A A . n A 1 20 U 20 41 41 U U A . n A 1 21 A 21 42 42 A A A . n A 1 22 A 22 43 43 A A A . n A 1 23 U 23 44 44 U U A . n A 1 24 G 24 45 45 G G A . n A 1 25 G 25 46 46 G G A . n A 1 26 G 26 47 47 G G A . n A 1 27 C 27 48 48 C C A . n A 1 28 U 28 49 49 U U A . n A 1 29 A 29 50 50 A A A . n A 1 30 C 30 51 51 C C A . n A 1 31 U 31 52 52 U U A . n A 1 32 G 32 53 53 G G A . n A 1 33 A 33 54 54 A A A . n A 1 34 C 34 55 55 C C A . n A 1 35 C 35 56 56 C C A . n A 1 36 C 36 57 57 C C A . n A 1 37 C 37 58 58 C C A . n A 1 38 G 38 59 59 G G A . n A 1 39 C 39 60 60 C C A . n A 1 40 C 40 61 61 C C A . n A 1 41 U 41 62 62 U U A . n A 1 42 U 42 63 63 U U A . n A 1 43 C 43 64 64 C C A . n A 1 44 A 44 65 65 A A A . n A 1 45 A 45 66 66 A A A . n A 1 46 A 46 67 67 A A A . n A 1 47 C 47 68 68 C C A . n A 1 48 C 48 69 69 C C A . n A 1 49 U 49 70 70 U U A . n A 1 50 A 50 71 71 A A A . n A 1 51 U 51 72 72 U U A . n A 1 52 U 52 73 73 U U A . n A 1 53 U 53 74 74 U U A . n A 1 54 G 54 75 75 G G A . n A 1 55 G 55 76 76 G G A . n A 1 56 A 56 77 77 A A A . n A 1 57 G 57 78 78 G G A . n A 1 58 A 58 79 79 A A A . n A 1 59 C 59 80 80 C C A . n A 1 60 U 60 81 81 U U A . n A 1 61 A 61 82 82 A A A . n A 1 62 U 62 83 83 U U A . n A 1 63 A 63 84 84 A A A . n A 1 64 A 64 85 85 A A A . n A 1 65 G 65 86 86 G G A . n A 1 66 G 66 87 87 G G A . n A 1 67 U 67 88 88 U U A . n A 1 68 CCC 68 89 89 CCC CCC A . n B 1 1 GTP 1 22 22 GTP GTP B . n B 1 2 G 2 23 23 G G B . n B 1 3 C 3 24 24 C C B . n B 1 4 C 4 25 25 C C B . n B 1 5 U 5 26 26 U U B . n B 1 6 U 6 27 27 U U B . n B 1 7 A 7 28 28 A A B . n B 1 8 U 8 29 29 U U B . n B 1 9 A 9 30 30 A A B . n B 1 10 C 10 31 31 C C B . n B 1 11 A 11 32 32 A A B . n B 1 12 G 12 33 33 G G B . n B 1 13 G 13 34 34 G G B . n B 1 14 G 14 35 35 G G B . n B 1 15 U 15 36 36 U U B . n B 1 16 A 16 37 37 A A B . n B 1 17 G 17 38 38 G G B . n B 1 18 C 18 39 39 C C B . n B 1 19 A 19 40 40 A A B . n B 1 20 U 20 41 41 U U B . n B 1 21 A 21 42 42 A A B . n B 1 22 A 22 43 43 A A B . n B 1 23 U 23 44 44 U U B . n B 1 24 G 24 45 45 G G B . n B 1 25 G 25 46 46 G G B . n B 1 26 G 26 47 47 G G B . n B 1 27 C 27 48 48 C C B . n B 1 28 U 28 49 49 U U B . n B 1 29 A 29 50 50 A A B . n B 1 30 C 30 51 51 C C B . n B 1 31 U 31 52 52 U U B . n B 1 32 G 32 53 53 G G B . n B 1 33 A 33 54 54 A A B . n B 1 34 C 34 55 55 C C B . n B 1 35 C 35 56 56 C C B . n B 1 36 C 36 57 57 C C B . n B 1 37 C 37 58 58 C C B . n B 1 38 G 38 59 59 G G B . n B 1 39 C 39 60 60 C C B . n B 1 40 C 40 61 61 C C B . n B 1 41 U 41 62 62 U U B . n B 1 42 U 42 63 63 U U B . n B 1 43 C 43 64 64 C C B . n B 1 44 A 44 65 65 A A B . n B 1 45 A 45 66 66 A A B . n B 1 46 A 46 67 67 A A B . n B 1 47 C 47 68 68 C C B . n B 1 48 C 48 69 69 C C B . n B 1 49 U 49 70 70 U U B . n B 1 50 A 50 71 71 A A B . n B 1 51 U 51 72 72 U U B . n B 1 52 U 52 73 73 U U B . n B 1 53 U 53 74 74 U U B . n B 1 54 G 54 75 75 G G B . n B 1 55 G 55 76 76 G G B . n B 1 56 A 56 77 77 A A B . n B 1 57 G 57 78 78 G G B . n B 1 58 A 58 79 79 A A B . n B 1 59 C 59 80 80 C C B . n B 1 60 U 60 81 81 U U B . n B 1 61 A 61 82 82 A A B . n B 1 62 U 62 83 83 U U B . n B 1 63 A 63 84 84 A A B . n B 1 64 A 64 85 85 A A B . n B 1 65 G 65 86 86 G G B . n B 1 66 G 66 87 87 G G B . n B 1 67 U 67 88 88 U U B . n B 1 68 CCC 68 89 89 CCC CCC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GMP 1 120 120 GMP GMP A . D 3 MG 1 228 228 MG MG A . E 4 SO4 1 211 211 SO4 SO4 A . F 4 SO4 1 212 212 SO4 SO4 A . G 4 SO4 1 213 213 SO4 SO4 A . H 4 SO4 1 216 216 SO4 SO4 A . I 4 SO4 1 229 229 SO4 SO4 A . J 5 SIN 1 301 301 SIN SIN A . K 2 GMP 1 120 120 GMP GMP B . L 3 MG 1 172 172 MG MG B . M 3 MG 1 175 175 MG MG B . N 4 SO4 1 214 214 SO4 SO4 B . O 4 SO4 1 217 217 SO4 SO4 B . P 4 SO4 1 219 219 SO4 SO4 B . Q 6 HOH 1 90 69 HOH HOH A . Q 6 HOH 2 91 87 HOH HOH A . Q 6 HOH 3 92 83 HOH HOH A . Q 6 HOH 4 171 171 HOH HOH A . Q 6 HOH 5 180 180 HOH HOH A . R 6 HOH 1 90 64 HOH HOH B . R 6 HOH 2 174 174 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GTP 22 ? PG ? B GTP 1 PG 2 1 Y 1 B GTP 22 ? O1G ? B GTP 1 O1G 3 1 Y 1 B GTP 22 ? O2G ? B GTP 1 O2G 4 1 Y 1 B GTP 22 ? O3G ? B GTP 1 O3G 5 1 N 1 A SIN 301 ? C4 ? J SIN 1 C4 6 1 N 1 A SIN 301 ? O3 ? J SIN 1 O3 7 1 N 1 A SIN 301 ? O4 ? J SIN 1 O4 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 MOLREP phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7_650)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3SKZ _cell.length_a 34.806 _cell.length_b 47.208 _cell.length_c 227.279 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SKZ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3SKZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details ;0.05 M Na-succinate, ~3.0 M ammonium sulfate, 0.5 mM spermine and 20 mM magnesium chloride, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-04-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.075 # _reflns.entry_id 3SKZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.6 _reflns.number_obs 11024 _reflns.number_all 12208 _reflns.percent_possible_obs 90.3 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 39.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 87.2 _reflns_shell.Rmerge_I_obs 0.209 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.8 _reflns_shell.pdbx_redundancy 8.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1046 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SKZ _refine.ls_number_reflns_obs 10910 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.89 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.605 _refine.ls_percent_reflns_obs 89.51 _refine.ls_R_factor_obs 0.2221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2194 _refine.ls_R_factor_R_free 0.2751 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.77 _refine.ls_number_reflns_R_free 520 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -8.7938 _refine.aniso_B[2][2] 34.9925 _refine.aniso_B[3][3] -26.1987 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.337 _refine.solvent_model_param_bsol 36.610 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.72 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.46 _refine.pdbx_overall_phase_error 34.77 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2908 _refine_hist.pdbx_number_atoms_ligand 88 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 3003 _refine_hist.d_res_high 2.605 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 3328 ? 'X-RAY DIFFRACTION' f_angle_d 1.000 ? ? 5175 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 22.025 ? ? 1657 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.059 ? ? 684 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 141 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.6047 2.8661 2394 0.3960 85.00 0.5270 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.8661 3.2793 2327 0.2590 82.00 0.3054 . . 113 . . . . 'X-RAY DIFFRACTION' . 3.2793 4.1256 2626 0.2013 91.00 0.2371 . . 134 . . . . 'X-RAY DIFFRACTION' . 4.1256 20.0336 3043 0.1699 99.00 0.2133 . . 135 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3SKZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3SKZ _struct.title ;Crystal structure of the 2'- deoxyguanosine riboswitch bound to guanosine ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SKZ _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;three-way junction, riboswitch, 2'-deoxy guanosine, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 6 ? R N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3SKZ _struct_ref.pdbx_db_accession 3SKZ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3SKZ A 1 ? 68 ? 3SKZ 22 ? 89 ? 22 89 2 1 3SKZ B 1 ? 68 ? 3SKZ 22 ? 89 ? 22 89 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,Q 2 1 B,K,L,M,N,O,P,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 22 A G 23 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale2 covale both ? A U 67 "O3'" ? ? ? 1_555 A CCC 68 P ? ? A U 88 A CCC 89 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GTP 22 B G 23 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale both ? B U 67 "O3'" ? ? ? 1_555 B CCC 68 P ? ? B U 88 B CCC 89 1_555 ? ? ? ? ? ? ? 1.589 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A CCC 68 N3 ? ? A GTP 22 A CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A CCC 68 O2 ? ? A GTP 22 A CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A CCC 68 N4 ? ? A GTP 22 A CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 67 O2 ? ? A G 23 A U 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 67 N3 ? ? A G 23 A U 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 24 A G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 24 A G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 24 A G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 65 N1 ? ? A C 25 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 25 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 65 N2 ? ? A C 25 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 26 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 26 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 63 N1 ? ? A U 27 A A 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 63 N6 ? ? A U 27 A A 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 62 N3 ? ? A A 28 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 62 O4 ? ? A A 28 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 61 N1 ? ? A U 29 A A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 61 N6 ? ? A U 29 A A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 60 N3 ? ? A A 30 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 60 O4 ? ? A A 30 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 31 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 31 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 31 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 32 A G 53 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A G 12 N2 ? ? ? 1_555 A G 13 O6 ? ? A G 33 A G 34 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog27 hydrog ? ? A G 12 N2 ? ? ? 1_555 A U 31 O4 ? ? A G 33 A U 52 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 A U 31 O2 ? ? A G 34 A U 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 A U 31 N3 ? ? A G 34 A U 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 35 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 35 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 35 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 36 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 36 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 37 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 37 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 38 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 38 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 38 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 39 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 39 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 39 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 21 N1 ? ? ? 1_555 A G 24 N2 ? ? A A 42 A G 45 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog44 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 45 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 45 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 45 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 46 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 46 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 46 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 53 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 53 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 53 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 60 O2 ? ? A C 57 A U 81 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 57 N1 ? ? A C 61 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 57 O6 ? ? A C 61 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 57 N2 ? ? A C 61 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 56 N1 ? ? A U 62 A A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 41 O4 ? ? ? 1_555 A A 56 N6 ? ? A U 62 A A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 42 N3 ? ? ? 1_555 A G 55 O6 ? ? A U 63 A G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog60 hydrog ? ? A U 42 O2 ? ? ? 1_555 A G 55 N1 ? ? A U 63 A G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog61 hydrog ? ? A C 43 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 64 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 43 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 64 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 43 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 64 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 65 A U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 65 A U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 52 N3 ? ? A A 66 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 52 O4 ? ? A A 66 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 51 N3 ? ? A A 67 A U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 51 O4 ? ? A A 67 A U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B GTP 1 N1 ? ? ? 1_555 B CCC 68 N3 ? ? B GTP 22 B CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B GTP 1 N2 ? ? ? 1_555 B CCC 68 O2 ? ? B GTP 22 B CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B GTP 1 O6 ? ? ? 1_555 B CCC 68 N4 ? ? B GTP 22 B CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B G 2 N1 ? ? ? 1_555 B U 67 O2 ? ? B G 23 B U 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? B G 2 O6 ? ? ? 1_555 B U 67 N3 ? ? B G 23 B U 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog75 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 66 N1 ? ? B C 24 B G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 66 O6 ? ? B C 24 B G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 66 N2 ? ? B C 24 B G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 65 N1 ? ? B C 25 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 65 O6 ? ? B C 25 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 65 N2 ? ? B C 25 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 64 N1 ? ? B U 26 B A 85 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog82 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 63 N1 ? ? B U 27 B A 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 63 N6 ? ? B U 27 B A 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 62 N3 ? ? B A 28 B U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 62 O4 ? ? B A 28 B U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 61 N1 ? ? B U 29 B A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 61 N6 ? ? B U 29 B A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 60 N3 ? ? B A 30 B U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 60 O4 ? ? B A 30 B U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 38 N1 ? ? B C 31 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 38 O6 ? ? B C 31 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 38 N2 ? ? B C 31 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B A 11 N1 ? ? ? 1_555 B G 32 N2 ? ? B A 32 B G 53 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog94 hydrog ? ? B A 11 N6 ? ? ? 1_555 B G 32 N3 ? ? B A 32 B G 53 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog95 hydrog ? ? B G 12 N2 ? ? ? 1_555 B G 13 O6 ? ? B G 33 B G 34 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog96 hydrog ? ? B G 12 N2 ? ? ? 1_555 B U 31 O4 ? ? B G 33 B U 52 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog97 hydrog ? ? B G 13 N1 ? ? ? 1_555 B U 31 O2 ? ? B G 34 B U 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog98 hydrog ? ? B G 13 O6 ? ? ? 1_555 B U 31 N3 ? ? B G 34 B U 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog99 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 30 N3 ? ? B G 35 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 14 N2 ? ? ? 1_555 B C 30 O2 ? ? B G 35 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 14 O6 ? ? ? 1_555 B C 30 N4 ? ? B G 35 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B U 15 N3 ? ? ? 1_555 B A 29 N1 ? ? B U 36 B A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 15 O4 ? ? ? 1_555 B A 29 N6 ? ? B U 36 B A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B A 16 N1 ? ? ? 1_555 B U 28 N3 ? ? B A 37 B U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B A 16 N6 ? ? ? 1_555 B U 28 O4 ? ? B A 37 B U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 27 N3 ? ? B G 38 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 27 O2 ? ? B G 38 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 27 N4 ? ? B G 38 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 18 N3 ? ? ? 1_555 B G 26 N1 ? ? B C 39 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B C 18 N4 ? ? ? 1_555 B G 26 O6 ? ? B C 39 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B C 18 O2 ? ? ? 1_555 B G 26 N2 ? ? B C 39 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B A 21 N1 ? ? ? 1_555 B G 24 N2 ? ? B A 42 B G 45 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog113 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 45 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 45 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 45 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 47 N3 ? ? B G 46 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 47 O2 ? ? B G 46 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 47 N4 ? ? B G 46 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? B G 53 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? B G 53 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? B G 53 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B C 36 N4 ? ? ? 1_555 B U 60 O2 ? ? B C 57 B U 81 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog123 hydrog ? ? B C 40 N3 ? ? ? 1_555 B G 57 N1 ? ? B C 61 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B C 40 N4 ? ? ? 1_555 B G 57 O6 ? ? B C 61 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B C 40 O2 ? ? ? 1_555 B G 57 N2 ? ? B C 61 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B U 41 N3 ? ? ? 1_555 B A 56 N1 ? ? B U 62 B A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B U 41 O4 ? ? ? 1_555 B A 56 N6 ? ? B U 62 B A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B U 42 N3 ? ? ? 1_555 B G 55 O6 ? ? B U 63 B G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog129 hydrog ? ? B U 42 O2 ? ? ? 1_555 B G 55 N1 ? ? B U 63 B G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog130 hydrog ? ? B C 43 N3 ? ? ? 1_555 B G 54 N1 ? ? B C 64 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B C 43 N4 ? ? ? 1_555 B G 54 O6 ? ? B C 64 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B C 43 O2 ? ? ? 1_555 B G 54 N2 ? ? B C 64 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B A 44 N1 ? ? ? 1_555 B U 53 N3 ? ? B A 65 B U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B A 44 N6 ? ? ? 1_555 B U 53 O4 ? ? B A 65 B U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B A 45 N1 ? ? ? 1_555 B U 52 N3 ? ? B A 66 B U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? B A 45 N6 ? ? ? 1_555 B U 52 O4 ? ? B A 66 B U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B A 46 N1 ? ? ? 1_555 B U 51 N3 ? ? B A 67 B U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B A 46 N6 ? ? ? 1_555 B U 51 O4 ? ? B A 67 B U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B C 47 O2 ? ? ? 1_555 B U 51 N3 ? ? B C 68 B U 72 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GMP 120 ? 8 'BINDING SITE FOR RESIDUE GMP A 120' AC2 Software A MG 228 ? 2 'BINDING SITE FOR RESIDUE MG A 228' AC3 Software A SO4 211 ? 3 'BINDING SITE FOR RESIDUE SO4 A 211' AC4 Software A SO4 212 ? 2 'BINDING SITE FOR RESIDUE SO4 A 212' AC5 Software A SO4 213 ? 4 'BINDING SITE FOR RESIDUE SO4 A 213' AC6 Software A SO4 216 ? 4 'BINDING SITE FOR RESIDUE SO4 A 216' AC7 Software A SO4 229 ? 2 'BINDING SITE FOR RESIDUE SO4 A 229' AC8 Software A SIN 301 ? 2 'BINDING SITE FOR RESIDUE SIN A 301' AC9 Software B GMP 120 ? 9 'BINDING SITE FOR RESIDUE GMP B 120' BC1 Software B MG 172 ? 4 'BINDING SITE FOR RESIDUE MG B 172' BC2 Software B SO4 214 ? 2 'BINDING SITE FOR RESIDUE SO4 B 214' BC3 Software B SO4 217 ? 2 'BINDING SITE FOR RESIDUE SO4 B 217' BC4 Software B SO4 219 ? 3 'BINDING SITE FOR RESIDUE SO4 B 219' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 A A 9 ? A A 30 . ? 1_555 ? 2 AC1 8 C A 10 ? C A 31 . ? 1_555 ? 3 AC1 8 C A 34 ? C A 55 . ? 1_555 ? 4 AC1 8 C A 36 ? C A 57 . ? 1_555 ? 5 AC1 8 C A 37 ? C A 58 . ? 1_555 ? 6 AC1 8 G A 38 ? G A 59 . ? 1_555 ? 7 AC1 8 C A 59 ? C A 80 . ? 1_555 ? 8 AC1 8 U A 60 ? U A 81 . ? 1_555 ? 9 AC2 2 C A 37 ? C A 58 . ? 1_555 ? 10 AC2 2 G A 38 ? G A 59 . ? 1_555 ? 11 AC3 3 C A 3 ? C A 24 . ? 1_555 ? 12 AC3 3 C A 4 ? C A 25 . ? 1_555 ? 13 AC3 3 G A 65 ? G A 86 . ? 1_555 ? 14 AC4 2 C A 43 ? C A 64 . ? 1_555 ? 15 AC4 2 A A 44 ? A A 65 . ? 1_555 ? 16 AC5 4 A A 9 ? A A 30 . ? 1_555 ? 17 AC5 4 A A 58 ? A A 79 . ? 1_555 ? 18 AC5 4 C A 59 ? C A 80 . ? 1_555 ? 19 AC5 4 U A 60 ? U A 81 . ? 1_555 ? 20 AC6 4 C A 18 ? C A 39 . ? 1_555 ? 21 AC6 4 A A 19 ? A A 40 . ? 1_555 ? 22 AC6 4 U A 20 ? U A 41 . ? 1_555 ? 23 AC6 4 HOH Q . ? HOH A 91 . ? 1_555 ? 24 AC7 2 C A 47 ? C A 68 . ? 1_555 ? 25 AC7 2 HOH Q . ? HOH A 180 . ? 1_555 ? 26 AC8 2 C A 36 ? C A 57 . ? 1_555 ? 27 AC8 2 C A 37 ? C A 58 . ? 1_555 ? 28 AC9 9 A B 9 ? A B 30 . ? 1_555 ? 29 AC9 9 C B 10 ? C B 31 . ? 1_555 ? 30 AC9 9 A B 33 ? A B 54 . ? 1_555 ? 31 AC9 9 C B 34 ? C B 55 . ? 1_555 ? 32 AC9 9 C B 36 ? C B 57 . ? 1_555 ? 33 AC9 9 C B 37 ? C B 58 . ? 1_555 ? 34 AC9 9 G B 38 ? G B 59 . ? 1_555 ? 35 AC9 9 C B 59 ? C B 80 . ? 1_555 ? 36 AC9 9 U B 60 ? U B 81 . ? 1_555 ? 37 BC1 4 A B 11 ? A B 32 . ? 1_555 ? 38 BC1 4 C B 40 ? C B 61 . ? 1_555 ? 39 BC1 4 A B 56 ? A B 77 . ? 1_555 ? 40 BC1 4 G B 57 ? G B 78 . ? 1_555 ? 41 BC2 2 C B 3 ? C B 24 . ? 1_555 ? 42 BC2 2 C B 4 ? C B 25 . ? 1_555 ? 43 BC3 2 C B 43 ? C B 64 . ? 1_555 ? 44 BC3 2 A B 44 ? A B 65 . ? 1_555 ? 45 BC4 3 C B 18 ? C B 39 . ? 1_555 ? 46 BC4 3 A B 19 ? A B 40 . ? 1_555 ? 47 BC4 3 U B 20 ? U B 41 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B GTP 22 ? ? "O3'" B GTP 22 ? ? P B G 23 ? ? 109.19 119.70 -10.51 1.20 Y 2 1 "O3'" B GTP 22 ? ? P B G 23 ? ? "O5'" B G 23 ? ? 83.99 104.00 -20.01 1.90 Y 3 1 "O3'" B GTP 22 ? ? P B G 23 ? ? OP2 B G 23 ? ? 125.55 110.50 15.05 1.10 Y # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 A GTP 22 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 A CCC 68 A CCC 89 ? C ? 3 B GTP 1 B GTP 22 ? G "GUANOSINE-5'-TRIPHOSPHATE" 4 B CCC 68 B CCC 89 ? C ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 0.4428 -1.3913 22.4553 0.4770 0.8071 0.3427 0.0767 0.0244 0.0908 0.0241 0.1230 0.0974 0.0231 -0.0319 0.0523 0.2219 -0.1179 -0.1122 -0.0546 0.1691 -0.2160 -0.0954 0.0655 0.2387 'X-RAY DIFFRACTION' 2 ? refined 1.4940 0.7691 26.6713 0.4718 0.6741 0.3627 0.0345 0.0784 -0.0301 0.3478 0.0423 0.5510 -0.1187 -0.4324 0.1401 0.0543 0.1165 -0.0948 -0.2975 0.1990 -0.0725 -0.4050 0.0181 0.1428 'X-RAY DIFFRACTION' 3 ? refined 9.1231 1.8765 -3.9012 0.2651 0.4763 0.2456 -0.1303 0.0392 -0.0962 0.2746 0.8900 0.1165 -0.1983 0.1114 -0.2949 -0.0690 -0.3583 -0.1310 0.3116 0.1144 0.0115 -0.2457 0.0525 0.5835 'X-RAY DIFFRACTION' 4 ? refined -4.6414 -3.0737 -3.3964 0.3953 0.6876 0.2334 -0.0581 -0.0016 -0.0633 0.0025 0.2258 0.1251 -0.0125 -0.0101 0.1681 0.1434 -0.0286 -0.0018 0.3396 -0.0280 -0.0667 0.1510 -0.2359 0.1316 'X-RAY DIFFRACTION' 5 ? refined 1.2815 0.5230 -68.6889 0.4789 0.4892 0.4561 -0.0675 0.0872 0.2238 0.6503 2.0796 0.3788 -0.4128 0.2467 0.5598 0.1336 -0.0229 0.1209 -0.2582 0.0597 -0.3350 -0.1173 0.1272 0.2153 'X-RAY DIFFRACTION' 6 ? refined 2.3500 -0.8187 -72.7823 0.2434 0.4231 0.3013 -0.1007 -0.0390 0.1872 0.0179 0.6423 0.2592 -0.1051 -0.0651 0.4065 0.0939 -0.0943 0.1207 0.1888 0.0154 -0.2554 0.1711 -0.0101 0.1950 'X-RAY DIFFRACTION' 7 ? refined 9.5970 -3.0693 -41.9137 0.1517 0.1444 0.1864 0.0581 -0.0214 -0.0307 0.2394 0.4223 0.1571 0.2563 0.1664 0.1051 -0.0960 -0.0375 0.1692 -0.2247 0.2561 0.2113 -0.2220 -0.0804 0.2280 'X-RAY DIFFRACTION' 8 ? refined -4.5634 1.2110 -42.1991 0.0921 0.8398 0.0867 0.1090 0.2113 -0.0742 0.0559 0.1162 0.0590 -0.0592 -0.0008 0.0186 -0.0623 -0.2075 -0.0047 0.0008 0.1557 -0.1041 0.0115 -0.0746 0.1412 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 22:30)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 81:89)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 31:47)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 61:80)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain B and resid 22:30)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain B and resid 81:89)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain B and resid 31:47)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain X and resid 61:80)' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CCC PC P N S 73 CCC O1C O N N 74 CCC O2C O N N 75 CCC P P N N 76 CCC OP1 O N N 77 CCC OP2 O N N 78 CCC OP3 O N N 79 CCC "O5'" O N N 80 CCC "C5'" C N N 81 CCC "C4'" C N R 82 CCC "O4'" O N N 83 CCC "C3'" C N R 84 CCC "O3'" O N N 85 CCC "C2'" C N R 86 CCC "O2'" O N N 87 CCC "C1'" C N R 88 CCC N1 N N N 89 CCC C2 C N N 90 CCC O2 O N N 91 CCC N3 N N N 92 CCC C4 C N N 93 CCC N4 N N N 94 CCC C5 C N N 95 CCC C6 C N N 96 CCC HOC2 H N N 97 CCC HOP2 H N N 98 CCC HOP3 H N N 99 CCC "H5'" H N N 100 CCC "H5''" H N N 101 CCC "H4'" H N N 102 CCC "H3'" H N N 103 CCC "H2'" H N N 104 CCC "H1'" H N N 105 CCC H41 H N N 106 CCC H42 H N N 107 CCC H5 H N N 108 CCC H6 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 GMP "O5'" O N N 148 GMP "C5'" C N N 149 GMP "C4'" C N R 150 GMP "O4'" O N N 151 GMP "C3'" C N S 152 GMP "O3'" O N N 153 GMP "C2'" C N R 154 GMP "O2'" O N N 155 GMP "C1'" C N R 156 GMP N9 N Y N 157 GMP C8 C Y N 158 GMP N7 N Y N 159 GMP C5 C Y N 160 GMP C6 C N N 161 GMP O6 O N N 162 GMP N1 N N N 163 GMP C2 C N N 164 GMP N2 N N N 165 GMP N3 N N N 166 GMP C4 C Y N 167 GMP "HO5'" H N N 168 GMP "H5'1" H N N 169 GMP "H5'2" H N N 170 GMP "H4'" H N N 171 GMP "H3'" H N N 172 GMP "HO3'" H N N 173 GMP "H2'" H N N 174 GMP "HO2'" H N N 175 GMP "H1'" H N N 176 GMP H8 H N N 177 GMP HN1 H N N 178 GMP HN21 H N N 179 GMP HN22 H N N 180 GTP PG P N N 181 GTP O1G O N N 182 GTP O2G O N N 183 GTP O3G O N N 184 GTP O3B O N N 185 GTP PB P N N 186 GTP O1B O N N 187 GTP O2B O N N 188 GTP O3A O N N 189 GTP PA P N N 190 GTP O1A O N N 191 GTP O2A O N N 192 GTP "O5'" O N N 193 GTP "C5'" C N N 194 GTP "C4'" C N R 195 GTP "O4'" O N N 196 GTP "C3'" C N S 197 GTP "O3'" O N N 198 GTP "C2'" C N R 199 GTP "O2'" O N N 200 GTP "C1'" C N R 201 GTP N9 N Y N 202 GTP C8 C Y N 203 GTP N7 N Y N 204 GTP C5 C Y N 205 GTP C6 C N N 206 GTP O6 O N N 207 GTP N1 N N N 208 GTP C2 C N N 209 GTP N2 N N N 210 GTP N3 N N N 211 GTP C4 C Y N 212 GTP HOG2 H N N 213 GTP HOG3 H N N 214 GTP HOB2 H N N 215 GTP HOA2 H N N 216 GTP "H5'" H N N 217 GTP "H5''" H N N 218 GTP "H4'" H N N 219 GTP "H3'" H N N 220 GTP "HO3'" H N N 221 GTP "H2'" H N N 222 GTP "HO2'" H N N 223 GTP "H1'" H N N 224 GTP H8 H N N 225 GTP HN1 H N N 226 GTP HN21 H N N 227 GTP HN22 H N N 228 HOH O O N N 229 HOH H1 H N N 230 HOH H2 H N N 231 MG MG MG N N 232 SIN C1 C N N 233 SIN O1 O N N 234 SIN O2 O N N 235 SIN C2 C N N 236 SIN C3 C N N 237 SIN C4 C N N 238 SIN O3 O N N 239 SIN O4 O N N 240 SIN HO2 H N N 241 SIN H21 H N N 242 SIN H22 H N N 243 SIN H31 H N N 244 SIN H32 H N N 245 SIN HO4 H N N 246 SO4 S S N N 247 SO4 O1 O N N 248 SO4 O2 O N N 249 SO4 O3 O N N 250 SO4 O4 O N N 251 U OP3 O N N 252 U P P N N 253 U OP1 O N N 254 U OP2 O N N 255 U "O5'" O N N 256 U "C5'" C N N 257 U "C4'" C N R 258 U "O4'" O N N 259 U "C3'" C N S 260 U "O3'" O N N 261 U "C2'" C N R 262 U "O2'" O N N 263 U "C1'" C N R 264 U N1 N N N 265 U C2 C N N 266 U O2 O N N 267 U N3 N N N 268 U C4 C N N 269 U O4 O N N 270 U C5 C N N 271 U C6 C N N 272 U HOP3 H N N 273 U HOP2 H N N 274 U "H5'" H N N 275 U "H5''" H N N 276 U "H4'" H N N 277 U "H3'" H N N 278 U "HO3'" H N N 279 U "H2'" H N N 280 U "HO2'" H N N 281 U "H1'" H N N 282 U H3 H N N 283 U H5 H N N 284 U H6 H N N 285 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CCC PC O1C doub N N 76 CCC PC O2C sing N N 77 CCC PC "O3'" sing N N 78 CCC PC "O2'" sing N N 79 CCC O2C HOC2 sing N N 80 CCC P OP1 doub N N 81 CCC P OP2 sing N N 82 CCC P OP3 sing N N 83 CCC P "O5'" sing N N 84 CCC OP2 HOP2 sing N N 85 CCC OP3 HOP3 sing N N 86 CCC "O5'" "C5'" sing N N 87 CCC "C5'" "C4'" sing N N 88 CCC "C5'" "H5'" sing N N 89 CCC "C5'" "H5''" sing N N 90 CCC "C4'" "O4'" sing N N 91 CCC "C4'" "C3'" sing N N 92 CCC "C4'" "H4'" sing N N 93 CCC "O4'" "C1'" sing N N 94 CCC "C3'" "O3'" sing N N 95 CCC "C3'" "C2'" sing N N 96 CCC "C3'" "H3'" sing N N 97 CCC "C2'" "O2'" sing N N 98 CCC "C2'" "C1'" sing N N 99 CCC "C2'" "H2'" sing N N 100 CCC "C1'" N1 sing N N 101 CCC "C1'" "H1'" sing N N 102 CCC N1 C2 sing N N 103 CCC N1 C6 sing N N 104 CCC C2 O2 doub N N 105 CCC C2 N3 sing N N 106 CCC N3 C4 doub N N 107 CCC C4 N4 sing N N 108 CCC C4 C5 sing N N 109 CCC N4 H41 sing N N 110 CCC N4 H42 sing N N 111 CCC C5 C6 doub N N 112 CCC C5 H5 sing N N 113 CCC C6 H6 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 GMP "O5'" "C5'" sing N N 155 GMP "O5'" "HO5'" sing N N 156 GMP "C5'" "C4'" sing N N 157 GMP "C5'" "H5'1" sing N N 158 GMP "C5'" "H5'2" sing N N 159 GMP "C4'" "O4'" sing N N 160 GMP "C4'" "C3'" sing N N 161 GMP "C4'" "H4'" sing N N 162 GMP "O4'" "C1'" sing N N 163 GMP "C3'" "O3'" sing N N 164 GMP "C3'" "C2'" sing N N 165 GMP "C3'" "H3'" sing N N 166 GMP "O3'" "HO3'" sing N N 167 GMP "C2'" "O2'" sing N N 168 GMP "C2'" "C1'" sing N N 169 GMP "C2'" "H2'" sing N N 170 GMP "O2'" "HO2'" sing N N 171 GMP "C1'" N9 sing N N 172 GMP "C1'" "H1'" sing N N 173 GMP N9 C8 sing Y N 174 GMP N9 C4 sing Y N 175 GMP C8 N7 doub Y N 176 GMP C8 H8 sing N N 177 GMP N7 C5 sing Y N 178 GMP C5 C6 sing N N 179 GMP C5 C4 doub Y N 180 GMP C6 O6 doub N N 181 GMP C6 N1 sing N N 182 GMP N1 C2 sing N N 183 GMP N1 HN1 sing N N 184 GMP C2 N2 sing N N 185 GMP C2 N3 doub N N 186 GMP N2 HN21 sing N N 187 GMP N2 HN22 sing N N 188 GMP N3 C4 sing N N 189 GTP PG O1G doub N N 190 GTP PG O2G sing N N 191 GTP PG O3G sing N N 192 GTP PG O3B sing N N 193 GTP O2G HOG2 sing N N 194 GTP O3G HOG3 sing N N 195 GTP O3B PB sing N N 196 GTP PB O1B doub N N 197 GTP PB O2B sing N N 198 GTP PB O3A sing N N 199 GTP O2B HOB2 sing N N 200 GTP O3A PA sing N N 201 GTP PA O1A doub N N 202 GTP PA O2A sing N N 203 GTP PA "O5'" sing N N 204 GTP O2A HOA2 sing N N 205 GTP "O5'" "C5'" sing N N 206 GTP "C5'" "C4'" sing N N 207 GTP "C5'" "H5'" sing N N 208 GTP "C5'" "H5''" sing N N 209 GTP "C4'" "O4'" sing N N 210 GTP "C4'" "C3'" sing N N 211 GTP "C4'" "H4'" sing N N 212 GTP "O4'" "C1'" sing N N 213 GTP "C3'" "O3'" sing N N 214 GTP "C3'" "C2'" sing N N 215 GTP "C3'" "H3'" sing N N 216 GTP "O3'" "HO3'" sing N N 217 GTP "C2'" "O2'" sing N N 218 GTP "C2'" "C1'" sing N N 219 GTP "C2'" "H2'" sing N N 220 GTP "O2'" "HO2'" sing N N 221 GTP "C1'" N9 sing N N 222 GTP "C1'" "H1'" sing N N 223 GTP N9 C8 sing Y N 224 GTP N9 C4 sing Y N 225 GTP C8 N7 doub Y N 226 GTP C8 H8 sing N N 227 GTP N7 C5 sing Y N 228 GTP C5 C6 sing N N 229 GTP C5 C4 doub Y N 230 GTP C6 O6 doub N N 231 GTP C6 N1 sing N N 232 GTP N1 C2 sing N N 233 GTP N1 HN1 sing N N 234 GTP C2 N2 sing N N 235 GTP C2 N3 doub N N 236 GTP N2 HN21 sing N N 237 GTP N2 HN22 sing N N 238 GTP N3 C4 sing N N 239 HOH O H1 sing N N 240 HOH O H2 sing N N 241 SIN C1 O1 doub N N 242 SIN C1 O2 sing N N 243 SIN C1 C2 sing N N 244 SIN O2 HO2 sing N N 245 SIN C2 C3 sing N N 246 SIN C2 H21 sing N N 247 SIN C2 H22 sing N N 248 SIN C3 C4 sing N N 249 SIN C3 H31 sing N N 250 SIN C3 H32 sing N N 251 SIN C4 O3 doub N N 252 SIN C4 O4 sing N N 253 SIN O4 HO4 sing N N 254 SO4 S O1 doub N N 255 SO4 S O2 doub N N 256 SO4 S O3 sing N N 257 SO4 S O4 sing N N 258 U OP3 P sing N N 259 U OP3 HOP3 sing N N 260 U P OP1 doub N N 261 U P OP2 sing N N 262 U P "O5'" sing N N 263 U OP2 HOP2 sing N N 264 U "O5'" "C5'" sing N N 265 U "C5'" "C4'" sing N N 266 U "C5'" "H5'" sing N N 267 U "C5'" "H5''" sing N N 268 U "C4'" "O4'" sing N N 269 U "C4'" "C3'" sing N N 270 U "C4'" "H4'" sing N N 271 U "O4'" "C1'" sing N N 272 U "C3'" "O3'" sing N N 273 U "C3'" "C2'" sing N N 274 U "C3'" "H3'" sing N N 275 U "O3'" "HO3'" sing N N 276 U "C2'" "O2'" sing N N 277 U "C2'" "C1'" sing N N 278 U "C2'" "H2'" sing N N 279 U "O2'" "HO2'" sing N N 280 U "C1'" N1 sing N N 281 U "C1'" "H1'" sing N N 282 U N1 C2 sing N N 283 U N1 C6 sing N N 284 U C2 O2 doub N N 285 U C2 N3 sing N N 286 U N3 C4 sing N N 287 U N3 H3 sing N N 288 U C4 O4 doub N N 289 U C4 C5 sing N N 290 U C5 C6 doub N N 291 U C5 H5 sing N N 292 U C6 H6 sing N N 293 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3SKZ 'double helix' 3SKZ 'a-form double helix' 3SKZ 'mismatched base pair' 3SKZ 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A CCC 68 1_555 -0.892 -0.153 -0.322 -12.906 -14.244 1.865 1 A_GTP22:CCC89_A A 22 ? A 89 ? 19 1 1 A G 2 1_555 A U 67 1_555 -2.679 -0.502 0.710 11.285 -12.395 3.092 2 A_G23:U88_A A 23 ? A 88 ? 28 1 1 A C 3 1_555 A G 66 1_555 0.092 -0.259 0.253 7.422 -21.010 0.801 3 A_C24:G87_A A 24 ? A 87 ? 19 1 1 A C 4 1_555 A G 65 1_555 0.385 -0.107 0.452 -10.232 -11.427 2.334 4 A_C25:G86_A A 25 ? A 86 ? 19 1 1 A U 5 1_555 A A 64 1_555 0.280 0.159 0.411 -0.946 -5.862 1.317 5 A_U26:A85_A A 26 ? A 85 ? 20 1 1 A U 6 1_555 A A 63 1_555 0.084 -0.055 -0.457 7.242 -16.060 -2.381 6 A_U27:A84_A A 27 ? A 84 ? 20 1 1 A A 7 1_555 A U 62 1_555 -0.055 0.257 -0.224 -17.848 -15.685 6.552 7 A_A28:U83_A A 28 ? A 83 ? 20 1 1 A U 8 1_555 A A 61 1_555 -0.194 0.069 0.306 -12.391 -17.913 4.547 8 A_U29:A82_A A 29 ? A 82 ? 20 1 1 A A 9 1_555 A U 60 1_555 -0.330 0.037 0.490 11.262 -2.621 -8.769 9 A_A30:U81_A A 30 ? A 81 ? 20 1 1 A G 26 1_555 A C 18 1_555 -0.391 -0.007 0.304 -9.282 -11.199 4.498 10 A_G47:C39_A A 47 ? A 39 ? 19 1 1 A C 27 1_555 A G 17 1_555 0.071 -0.042 0.321 4.858 -13.362 3.393 11 A_C48:G38_A A 48 ? A 38 ? 19 1 1 A U 28 1_555 A A 16 1_555 -0.457 -0.181 0.114 -0.809 -4.429 0.357 12 A_U49:A37_A A 49 ? A 37 ? 20 1 1 A A 29 1_555 A U 15 1_555 -0.286 -0.172 0.136 7.074 -10.175 3.522 13 A_A50:U36_A A 50 ? A 36 ? 20 1 1 A C 30 1_555 A G 14 1_555 0.043 -0.055 0.203 5.352 -12.522 -1.945 14 A_C51:G35_A A 51 ? A 35 ? 19 1 1 A U 31 1_555 A G 13 1_555 1.975 -0.471 0.299 -8.792 -19.179 1.824 15 A_U52:G34_A A 52 ? A 34 ? 28 1 1 A G 32 1_555 A C 39 1_555 -0.020 -0.133 0.421 14.083 -14.020 -3.037 16 A_G53:C60_A A 53 ? A 60 ? 19 1 1 A C 10 1_555 A G 38 1_555 0.583 -0.230 -0.183 4.336 -12.499 -2.226 17 A_C31:G59_A A 31 ? A 59 ? 19 1 1 A G 24 1_555 A C 48 1_555 -0.618 -0.232 -0.261 -15.962 -9.672 -3.900 18 A_G45:C69_A A 45 ? A 69 ? 19 1 1 A G 25 1_555 A C 47 1_555 -0.395 -0.171 0.139 -6.626 -10.520 -0.772 19 A_G46:C68_A A 46 ? A 68 ? 19 1 1 A U 51 1_555 A A 46 1_555 -0.137 0.122 -0.261 -8.600 -10.208 9.713 20 A_U72:A67_A A 72 ? A 67 ? 20 1 1 A U 52 1_555 A A 45 1_555 -0.943 0.034 -0.494 -3.971 -7.691 1.757 21 A_U73:A66_A A 73 ? A 66 ? 20 1 1 A U 53 1_555 A A 44 1_555 -0.098 -0.206 -0.434 11.079 -11.314 2.983 22 A_U74:A65_A A 74 ? A 65 ? 20 1 1 A G 54 1_555 A C 43 1_555 -0.158 -0.227 -0.512 -10.558 -18.893 -7.118 23 A_G75:C64_A A 75 ? A 64 ? 19 1 1 A G 55 1_555 A U 42 1_555 -1.200 -0.433 0.100 -1.709 0.146 -2.794 24 A_G76:U63_A A 76 ? A 63 ? 28 1 1 A A 56 1_555 A U 41 1_555 -0.314 -0.130 0.114 1.381 -12.147 1.445 25 A_A77:U62_A A 77 ? A 62 ? 20 1 1 A G 57 1_555 A C 40 1_555 -0.178 -0.100 -0.334 -6.365 -12.072 0.185 26 A_G78:C61_A A 78 ? A 61 ? 19 1 1 B GTP 1 1_555 B CCC 68 1_555 -0.350 -0.014 0.003 -2.999 -1.175 0.837 27 B_GTP22:CCC89_B B 22 ? B 89 ? 19 1 1 B G 2 1_555 B U 67 1_555 -2.162 -0.152 0.201 4.173 -19.242 8.525 28 B_G23:U88_B B 23 ? B 88 ? 28 1 1 B C 3 1_555 B G 66 1_555 -0.267 -0.099 -0.028 5.792 -15.317 2.515 29 B_C24:G87_B B 24 ? B 87 ? 19 1 1 B C 4 1_555 B G 65 1_555 0.135 0.174 0.592 4.630 -8.724 -0.255 30 B_C25:G86_B B 25 ? B 86 ? 19 1 1 B U 5 1_555 B A 64 1_555 -0.100 0.163 0.089 1.139 -12.421 14.343 31 B_U26:A85_B B 26 ? B 85 ? ? 1 1 B U 6 1_555 B A 63 1_555 -0.764 -0.126 -0.539 5.676 -16.510 13.254 32 B_U27:A84_B B 27 ? B 84 ? 20 1 1 B A 7 1_555 B U 62 1_555 0.112 0.107 0.385 -5.881 -4.272 6.142 33 B_A28:U83_B B 28 ? B 83 ? 20 1 1 B U 8 1_555 B A 61 1_555 -0.176 -0.086 0.261 0.513 -13.938 -2.108 34 B_U29:A82_B B 29 ? B 82 ? 20 1 1 B A 9 1_555 B U 60 1_555 0.298 0.163 0.783 10.120 -4.541 1.230 35 B_A30:U81_B B 30 ? B 81 ? 20 1 1 B G 26 1_555 B C 18 1_555 -0.363 -0.056 0.361 -5.067 -5.307 4.334 36 B_G47:C39_B B 47 ? B 39 ? 19 1 1 B C 27 1_555 B G 17 1_555 0.120 0.117 0.666 -7.325 -8.753 6.037 37 B_C48:G38_B B 48 ? B 38 ? 19 1 1 B U 28 1_555 B A 16 1_555 -0.100 -0.186 0.385 -2.476 -0.677 1.183 38 B_U49:A37_B B 49 ? B 37 ? 20 1 1 B A 29 1_555 B U 15 1_555 0.267 0.156 0.414 12.711 -15.991 7.279 39 B_A50:U36_B B 50 ? B 36 ? 20 1 1 B C 30 1_555 B G 14 1_555 0.096 0.125 0.219 1.790 -21.329 4.555 40 B_C51:G35_B B 51 ? B 35 ? 19 1 1 B U 31 1_555 B G 13 1_555 2.515 -0.535 0.221 -6.671 -13.916 4.112 41 B_U52:G34_B B 52 ? B 34 ? 28 1 1 B G 32 1_555 B C 39 1_555 0.207 -0.109 0.479 16.452 -10.335 2.108 42 B_G53:C60_B B 53 ? B 60 ? 19 1 1 B C 10 1_555 B G 38 1_555 1.179 -0.320 -0.110 5.872 -10.533 -0.257 43 B_C31:G59_B B 31 ? B 59 ? 19 1 1 B G 24 1_555 B C 48 1_555 -0.707 0.126 -0.201 -12.908 12.081 7.568 44 B_G45:C69_B B 45 ? B 69 ? 19 1 1 B G 25 1_555 B C 47 1_555 -0.718 0.105 -1.039 -24.009 -19.250 8.416 45 B_G46:C68_B B 46 ? B 68 ? 19 1 1 B U 51 1_555 B A 46 1_555 0.330 0.002 -0.307 -7.047 -2.359 7.005 46 B_U72:A67_B B 72 ? B 67 ? 20 1 1 B U 52 1_555 B A 45 1_555 -0.553 -0.023 -0.496 -4.116 -3.884 -1.188 47 B_U73:A66_B B 73 ? B 66 ? 20 1 1 B U 53 1_555 B A 44 1_555 -0.057 -0.106 -0.274 7.170 -15.318 -2.548 48 B_U74:A65_B B 74 ? B 65 ? 20 1 1 B G 54 1_555 B C 43 1_555 -1.026 -0.147 -0.405 -10.332 -8.720 6.296 49 B_G75:C64_B B 75 ? B 64 ? 19 1 1 B G 55 1_555 B U 42 1_555 -1.792 -0.519 -0.100 -4.619 -11.474 -1.795 50 B_G76:U63_B B 76 ? B 63 ? 28 1 1 B A 56 1_555 B U 41 1_555 0.494 -0.095 0.202 1.836 0.070 1.787 51 B_A77:U62_B B 77 ? B 62 ? 20 1 1 B G 57 1_555 B C 40 1_555 0.716 0.262 0.310 3.414 -8.936 -0.324 52 B_G78:C61_B B 78 ? B 61 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A CCC 68 1_555 A G 2 1_555 A U 67 1_555 -0.063 -1.827 2.407 -12.399 6.531 22.399 -5.174 -2.081 1.632 15.065 28.601 26.374 1 AA_GTP22G23:U88CCC89_AA A 22 ? A 89 ? A 23 ? A 88 ? 1 A G 2 1_555 A U 67 1_555 A C 3 1_555 A G 66 1_555 -0.341 -1.405 3.247 0.416 9.791 44.654 -2.624 0.474 2.891 12.705 -0.540 45.663 2 AA_G23C24:G87U88_AA A 23 ? A 88 ? A 24 ? A 87 ? 1 A C 3 1_555 A G 66 1_555 A C 4 1_555 A G 65 1_555 -0.054 -1.811 3.453 -0.821 10.420 35.145 -4.286 -0.025 2.820 16.803 1.324 36.619 3 AA_C24C25:G86G87_AA A 24 ? A 87 ? A 25 ? A 86 ? 1 A C 4 1_555 A G 65 1_555 A U 5 1_555 A A 64 1_555 -0.428 -1.956 2.839 -1.203 5.814 24.370 -5.885 0.701 2.335 13.517 2.797 25.073 4 AA_C25U26:A85G86_AA A 25 ? A 86 ? A 26 ? A 85 ? 1 A U 5 1_555 A A 64 1_555 A U 6 1_555 A A 63 1_555 0.230 -1.502 2.938 5.377 1.161 32.414 -2.833 0.418 2.884 2.061 -9.547 32.865 5 AA_U26U27:A84A85_AA A 26 ? A 85 ? A 27 ? A 84 ? 1 A U 6 1_555 A A 63 1_555 A A 7 1_555 A U 62 1_555 0.408 -1.411 3.650 -2.140 20.333 33.554 -4.559 -0.868 2.412 31.820 3.350 39.138 6 AA_U27A28:U83A84_AA A 27 ? A 84 ? A 28 ? A 83 ? 1 A A 7 1_555 A U 62 1_555 A U 8 1_555 A A 61 1_555 -0.225 -1.139 3.146 -0.726 9.083 32.017 -3.382 0.282 2.734 16.065 1.284 33.256 7 AA_A28U29:A82U83_AA A 28 ? A 83 ? A 29 ? A 82 ? 1 A U 8 1_555 A A 61 1_555 A A 9 1_555 A U 60 1_555 0.071 -1.430 2.641 2.255 9.227 23.816 -5.132 0.306 1.957 21.305 -5.207 25.615 8 AA_U29A30:U81A82_AA A 29 ? A 82 ? A 30 ? A 81 ? 1 A G 26 1_555 A C 18 1_555 A C 27 1_555 A G 17 1_555 -0.708 -1.430 2.954 1.122 1.489 32.894 -2.746 1.419 2.863 2.626 -1.980 32.945 9 AA_G47C48:G38C39_AA A 47 ? A 39 ? A 48 ? A 38 ? 1 A C 27 1_555 A G 17 1_555 A U 28 1_555 A A 16 1_555 0.216 -1.320 3.181 0.914 11.296 29.457 -4.332 -0.244 2.521 21.250 -1.720 31.516 10 AA_C48U49:A37G38_AA A 48 ? A 38 ? A 49 ? A 37 ? 1 A U 28 1_555 A A 16 1_555 A A 29 1_555 A U 15 1_555 -0.141 -1.250 3.022 -1.437 5.995 33.146 -3.027 0.034 2.764 10.396 2.492 33.699 11 AA_U49A50:U36A37_AA A 49 ? A 37 ? A 50 ? A 36 ? 1 A A 29 1_555 A U 15 1_555 A C 30 1_555 A G 14 1_555 0.046 -1.443 3.144 -2.616 6.004 34.164 -3.262 -0.446 2.846 10.105 4.403 34.768 12 AA_A50C51:G35U36_AA A 50 ? A 36 ? A 51 ? A 35 ? 1 A C 30 1_555 A G 14 1_555 A U 31 1_555 A G 13 1_555 0.718 -1.554 3.457 5.851 8.698 44.684 -2.772 -0.399 3.181 11.258 -7.573 45.836 13 AA_C51U52:G34G35_AA A 51 ? A 35 ? A 52 ? A 34 ? 1 A U 31 1_555 A G 13 1_555 A G 32 1_555 A C 39 1_555 2.900 -2.081 2.744 -3.164 4.248 47.845 -2.814 -3.751 2.377 5.219 3.887 48.120 14 AA_U52G53:C60G34_AA A 52 ? A 34 ? A 53 ? A 60 ? 1 A G 32 1_555 A C 39 1_555 A C 10 1_555 A G 38 1_555 -2.191 -0.782 3.081 -3.429 9.501 58.878 -1.235 2.040 3.045 9.588 3.460 59.662 15 AA_G53C31:G59C60_AA A 53 ? A 60 ? A 31 ? A 59 ? 1 A G 24 1_555 A C 48 1_555 A G 25 1_555 A C 47 1_555 0.153 -2.280 2.957 -2.574 6.594 31.063 -5.158 -0.669 2.414 12.116 4.729 31.839 16 AA_G45G46:C68C69_AA A 45 ? A 69 ? A 46 ? A 68 ? 1 A G 25 1_555 A C 47 1_555 A U 51 1_555 A A 46 1_555 -0.951 -2.621 3.379 2.992 1.820 27.321 -5.947 2.723 3.082 3.833 -6.302 27.540 17 AA_G46U72:A67C68_AA A 46 ? A 68 ? A 72 ? A 67 ? 1 A U 51 1_555 A A 46 1_555 A U 52 1_555 A A 45 1_555 -1.093 -0.771 2.916 -6.234 9.010 28.080 -3.129 0.966 2.720 17.738 12.274 30.102 18 AA_U72U73:A66A67_AA A 72 ? A 67 ? A 73 ? A 66 ? 1 A U 52 1_555 A A 45 1_555 A U 53 1_555 A A 44 1_555 0.421 -1.212 3.112 -1.059 1.258 36.528 -2.096 -0.809 3.057 2.006 1.689 36.564 19 AA_U73U74:A65A66_AA A 73 ? A 66 ? A 74 ? A 65 ? 1 A U 53 1_555 A A 44 1_555 A G 54 1_555 A C 43 1_555 -0.658 -1.957 3.888 -0.203 14.571 27.654 -6.549 1.183 2.564 28.143 0.392 31.192 20 AA_U74G75:C64A65_AA A 74 ? A 65 ? A 75 ? A 64 ? 1 A G 54 1_555 A C 43 1_555 A G 55 1_555 A U 42 1_555 0.243 -2.057 2.996 -5.743 4.177 31.236 -4.385 -1.342 2.620 7.634 10.496 32.013 21 AA_G75G76:U63C64_AA A 75 ? A 64 ? A 76 ? A 63 ? 1 A G 55 1_555 A U 42 1_555 A A 56 1_555 A U 41 1_555 0.204 -1.623 3.264 3.029 2.147 28.064 -3.807 0.272 3.138 4.403 -6.211 28.303 22 AA_G76A77:U62U63_AA A 76 ? A 63 ? A 77 ? A 62 ? 1 A A 56 1_555 A U 41 1_555 A G 57 1_555 A C 40 1_555 1.061 -2.099 3.407 4.755 14.624 28.543 -6.148 -1.131 2.239 27.302 -8.877 32.346 23 AA_A77G78:C61U62_AA A 77 ? A 62 ? A 78 ? A 61 ? 1 B GTP 1 1_555 B CCC 68 1_555 B G 2 1_555 B U 67 1_555 -0.015 -2.154 2.883 -2.168 11.303 23.432 -7.050 -0.403 1.676 25.921 4.972 26.070 24 BB_GTP22G23:U88CCC89_BB B 22 ? B 89 ? B 23 ? B 88 ? 1 B G 2 1_555 B U 67 1_555 B C 3 1_555 B G 66 1_555 0.006 -1.332 3.186 -0.939 6.741 37.520 -2.842 -0.121 2.911 10.375 1.445 38.110 25 BB_G23C24:G87U88_BB B 23 ? B 88 ? B 24 ? B 87 ? 1 B C 3 1_555 B G 66 1_555 B C 4 1_555 B G 65 1_555 0.172 -2.244 3.068 -4.163 7.219 30.868 -5.201 -0.961 2.451 13.262 7.647 31.947 26 BB_C24C25:G86G87_BB B 24 ? B 87 ? B 25 ? B 86 ? 1 B C 4 1_555 B G 65 1_555 B U 5 1_555 B A 64 1_555 0.068 -1.931 2.995 3.284 8.137 26.611 -5.594 0.507 2.306 17.097 -6.901 27.996 27 BB_C25U26:A85G86_BB B 25 ? B 86 ? B 26 ? B 85 ? 1 B U 5 1_555 B A 64 1_555 B U 6 1_555 B A 63 1_555 0.089 -0.934 3.086 3.909 10.659 29.927 -3.432 0.475 2.600 19.767 -7.249 31.962 28 BB_U26U27:A84A85_BB B 26 ? B 85 ? B 27 ? B 84 ? 1 B U 6 1_555 B A 63 1_555 B A 7 1_555 B U 62 1_555 0.046 -0.656 3.532 -8.133 12.042 39.116 -2.266 -0.971 3.137 17.278 11.669 41.628 29 BB_U27A28:U83A84_BB B 27 ? B 84 ? B 28 ? B 83 ? 1 B A 7 1_555 B U 62 1_555 B U 8 1_555 B A 61 1_555 -0.056 -1.571 3.072 5.271 7.292 31.795 -3.862 0.891 2.615 12.987 -9.389 33.012 30 BB_A28U29:A82U83_BB B 28 ? B 83 ? B 29 ? B 82 ? 1 B U 8 1_555 B A 61 1_555 B A 9 1_555 B U 60 1_555 0.266 -1.470 2.862 -0.169 7.540 29.296 -4.072 -0.538 2.415 14.605 0.328 30.230 31 BB_U29A30:U81A82_BB B 29 ? B 82 ? B 30 ? B 81 ? 1 B G 26 1_555 B C 18 1_555 B C 27 1_555 B G 17 1_555 0.090 -1.706 3.216 0.760 6.917 34.217 -3.824 -0.042 2.829 11.607 -1.275 34.896 32 BB_G47C48:G38C39_BB B 47 ? B 39 ? B 48 ? B 38 ? 1 B C 27 1_555 B G 17 1_555 B U 28 1_555 B A 16 1_555 -0.559 -1.526 2.840 0.120 7.199 31.697 -3.759 1.017 2.441 12.971 -0.215 32.484 33 BB_C48U49:A37G38_BB B 48 ? B 38 ? B 49 ? B 37 ? 1 B U 28 1_555 B A 16 1_555 B A 29 1_555 B U 15 1_555 0.177 -1.198 2.838 0.873 3.294 31.350 -2.727 -0.187 2.705 6.074 -1.610 31.530 34 BB_U49A50:U36A37_BB B 49 ? B 37 ? B 50 ? B 36 ? 1 B A 29 1_555 B U 15 1_555 B C 30 1_555 B G 14 1_555 0.074 -1.175 3.328 1.350 11.904 31.986 -3.814 0.079 2.730 20.716 -2.349 34.101 35 BB_A50C51:G35U36_BB B 50 ? B 36 ? B 51 ? B 35 ? 1 B C 30 1_555 B G 14 1_555 B U 31 1_555 B G 13 1_555 0.404 -1.325 3.377 3.403 9.857 46.864 -2.409 -0.228 3.075 12.216 -4.218 47.947 36 BB_C51U52:G34G35_BB B 51 ? B 35 ? B 52 ? B 34 ? 1 B U 31 1_555 B G 13 1_555 B G 32 1_555 B C 39 1_555 2.825 -1.833 2.685 -4.472 -0.823 49.847 -2.121 -3.595 2.467 -0.974 5.293 50.040 37 BB_U52G53:C60G34_BB B 52 ? B 34 ? B 53 ? B 60 ? 1 B G 32 1_555 B C 39 1_555 B C 10 1_555 B G 38 1_555 -2.221 -0.617 3.177 -1.790 11.969 58.389 -1.204 2.151 3.070 12.126 1.814 59.522 38 BB_G53C31:G59C60_BB B 53 ? B 60 ? B 31 ? B 59 ? 1 B G 24 1_555 B C 48 1_555 B G 25 1_555 B C 47 1_555 0.109 -2.358 3.569 9.137 18.104 25.297 -7.067 1.233 1.539 35.032 -17.679 32.318 39 BB_G45G46:C68C69_BB B 45 ? B 69 ? B 46 ? B 68 ? 1 B G 25 1_555 B C 47 1_555 B U 51 1_555 B A 46 1_555 -1.360 -2.249 2.957 -9.454 2.270 33.128 -4.124 0.915 3.062 3.878 16.152 34.487 40 BB_G46U72:A67C68_BB B 46 ? B 68 ? B 72 ? B 67 ? 1 B U 51 1_555 B A 46 1_555 B U 52 1_555 B A 45 1_555 -1.247 -0.960 3.053 -4.476 3.757 27.292 -2.838 1.578 3.057 7.849 9.351 27.899 41 BB_U72U73:A66A67_BB B 72 ? B 67 ? B 73 ? B 66 ? 1 B U 52 1_555 B A 45 1_555 B U 53 1_555 B A 44 1_555 0.436 -1.717 3.166 -0.686 -0.041 33.509 -2.972 -0.865 3.159 -0.071 1.190 33.516 42 BB_U73U74:A65A66_BB B 73 ? B 66 ? B 74 ? B 65 ? 1 B U 53 1_555 B A 44 1_555 B G 54 1_555 B C 43 1_555 0.007 -2.299 3.526 -0.675 16.282 26.082 -7.182 -0.131 1.809 32.368 1.342 30.680 43 BB_U74G75:C64A65_BB B 74 ? B 65 ? B 75 ? B 64 ? 1 B G 54 1_555 B C 43 1_555 B G 55 1_555 B U 42 1_555 -0.003 -1.533 3.097 -1.196 4.056 29.201 -3.802 -0.227 2.860 7.992 2.357 29.499 44 BB_G75G76:U63C64_BB B 75 ? B 64 ? B 76 ? B 63 ? 1 B G 55 1_555 B U 42 1_555 B A 56 1_555 B U 41 1_555 0.446 -1.862 3.070 -3.807 5.956 40.866 -3.199 -0.993 2.734 8.453 5.403 41.447 45 BB_G76A77:U62U63_BB B 76 ? B 63 ? B 77 ? B 62 ? 1 B A 56 1_555 B U 41 1_555 B G 57 1_555 B C 40 1_555 0.739 -2.367 2.976 6.131 4.636 29.854 -5.251 -0.340 2.681 8.816 -11.658 30.806 46 BB_A77G78:C61U62_BB B 77 ? B 62 ? B 78 ? B 61 ? # _atom_sites.entry_id 3SKZ _atom_sites.fract_transf_matrix[1][1] 0.028731 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021183 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004400 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_