HEADER TRANSFERASE 23-JUN-11 3SL2 TITLE ATP FORMS A STABLE COMPLEX WITH THE ESSENTIAL HISTIDINE KINASE WALK TITLE 2 (YYCG) DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR HISTIDINE KINASE YYCG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ATP BINDING DOMAIN; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YYCG, BSU40400; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS HISTIDINE KINASE, ATP BINDING, INTACT ATP, BERGERAT FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.CELIKEL,V.H.VELDORE,I.MATHEWS,K.DEVINE,K.I.VARUGHESE REVDAT 5 13-SEP-23 3SL2 1 REMARK REVDAT 4 21-OCT-20 3SL2 1 REMARK SEQADV LINK REVDAT 3 17-JUL-19 3SL2 1 REMARK REVDAT 2 23-JAN-13 3SL2 1 JRNL REVDAT 1 27-JUN-12 3SL2 0 JRNL AUTH R.CELIKEL,V.H.VELDORE,I.MATHEWS,K.M.DEVINE,K.I.VARUGHESE JRNL TITL ATP FORMS A STABLE COMPLEX WITH THE ESSENTIAL HISTIDINE JRNL TITL 2 KINASE WALK (YYCG) DOMAIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 839 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22751669 JRNL DOI 10.1107/S090744491201373X REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.636 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1207 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1634 ; 1.592 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 142 ; 6.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;37.256 ;24.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 215 ;13.669 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;26.074 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 183 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 878 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 714 ; 0.892 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1154 ; 1.639 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 493 ; 2.327 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 480 ; 3.864 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 450 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9392 15.1863 0.5588 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0643 REMARK 3 T33: 0.1174 T12: 0.0296 REMARK 3 T13: 0.0599 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 2.6614 L22: 1.9654 REMARK 3 L33: 1.4536 L12: 0.0911 REMARK 3 L13: -0.4647 L23: -0.2000 REMARK 3 S TENSOR REMARK 3 S11: -0.1982 S12: -0.2120 S13: -0.5345 REMARK 3 S21: -0.2323 S22: 0.1242 S23: -0.0980 REMARK 3 S31: 0.0768 S32: 0.0965 S33: 0.0741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 28.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.02300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2C2A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS-HCL, 100 MM NACL, 5% REMARK 280 GLYCEROL, 1.5 MM NAN3, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.52000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 29.52000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.65500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.52000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.82750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.52000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.48250 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.52000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.52000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.65500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 29.52000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 74.48250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 29.52000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.82750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -59.04000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 59.04000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 702 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 472 REMARK 465 VAL A 473 REMARK 465 LYS A 555 REMARK 465 ALA A 556 REMARK 465 ARG A 557 REMARK 465 THR A 558 REMARK 465 ARG A 559 REMARK 465 LYS A 560 REMARK 465 GLU A 603 REMARK 465 GLN A 604 REMARK 465 GLU A 605 REMARK 465 ASP A 606 REMARK 465 ASP A 607 REMARK 465 TRP A 608 REMARK 465 ASP A 609 REMARK 465 GLU A 610 REMARK 465 ALA A 611 REMARK 465 GLU A 612 REMARK 465 ASN A 613 REMARK 465 LEU A 614 REMARK 465 TYR A 615 REMARK 465 PHE A 616 REMARK 465 GLN A 617 REMARK 465 SER A 618 REMARK 465 LEU A 619 REMARK 465 GLU A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 465 HIS A 624 REMARK 465 HIS A 625 REMARK 465 HIS A 626 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 471 CG CD OE1 NE2 REMARK 470 GLU A 474 CG CD OE1 OE2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 469 -127.57 68.69 REMARK 500 ASN A 478 68.30 -117.22 REMARK 500 GLU A 510 -143.63 50.80 REMARK 500 PHE A 550 -2.27 75.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 503 OD1 REMARK 620 2 ATP A 703 O1G 176.1 REMARK 620 3 ATP A 703 O1B 98.4 85.5 REMARK 620 4 ATP A 703 O1A 93.2 87.0 88.5 REMARK 620 5 HOH A 804 O 85.7 90.4 175.3 89.0 REMARK 620 6 HOH A 805 O 83.3 96.6 89.4 175.6 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 801 O REMARK 620 2 HOH A 802 O 86.4 REMARK 620 3 HOH A 803 O 83.7 88.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 703 DBREF 3SL2 A 451 611 UNP Q45614 YYCG_BACSU 451 611 SEQADV 3SL2 MET A 450 UNP Q45614 INITIATING METHIONINE SEQADV 3SL2 GLU A 612 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 ASN A 613 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 LEU A 614 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 TYR A 615 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 PHE A 616 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 GLN A 617 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 SER A 618 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 LEU A 619 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 GLU A 620 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 HIS A 621 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 HIS A 622 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 HIS A 623 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 HIS A 624 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 HIS A 625 UNP Q45614 EXPRESSION TAG SEQADV 3SL2 HIS A 626 UNP Q45614 EXPRESSION TAG SEQRES 1 A 177 MET TRP ILE GLN ILE VAL ARG PHE MET SER LEU ILE ILE SEQRES 2 A 177 ASP ARG PHE GLU MET THR LYS GLU GLN HIS VAL GLU PHE SEQRES 3 A 177 ILE ARG ASN LEU PRO ASP ARG ASP LEU TYR VAL GLU ILE SEQRES 4 A 177 ASP GLN ASP LYS ILE THR GLN VAL LEU ASP ASN ILE ILE SEQRES 5 A 177 SER ASN ALA LEU LYS TYR SER PRO GLU GLY GLY HIS VAL SEQRES 6 A 177 THR PHE SER ILE ASP VAL ASN GLU GLU GLU GLU LEU LEU SEQRES 7 A 177 TYR ILE SER VAL LYS ASP GLU GLY ILE GLY ILE PRO LYS SEQRES 8 A 177 LYS ASP VAL GLU LYS VAL PHE ASP ARG PHE TYR ARG VAL SEQRES 9 A 177 ASP LYS ALA ARG THR ARG LYS LEU GLY GLY THR GLY LEU SEQRES 10 A 177 GLY LEU ALA ILE ALA LYS GLU MET VAL GLN ALA HIS GLY SEQRES 11 A 177 GLY ASP ILE TRP ALA ASP SER ILE GLU GLY LYS GLY THR SEQRES 12 A 177 THR ILE THR PHE THR LEU PRO TYR LYS GLU GLU GLN GLU SEQRES 13 A 177 ASP ASP TRP ASP GLU ALA GLU ASN LEU TYR PHE GLN SER SEQRES 14 A 177 LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 701 1 HET MG A 702 1 HET ATP A 703 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 HOH *115(H2 O) HELIX 1 1 ILE A 454 MET A 467 1 14 HELIX 2 2 ASP A 489 TYR A 507 1 19 HELIX 3 3 PRO A 539 VAL A 543 5 5 HELIX 4 4 LEU A 566 HIS A 578 1 13 SHEET 1 A 2 TRP A 451 GLN A 453 0 SHEET 2 A 2 TYR A 485 GLU A 487 -1 O VAL A 486 N ILE A 452 SHEET 1 B 5 GLU A 474 ASN A 478 0 SHEET 2 B 5 HIS A 513 ASN A 521 1 O PHE A 516 N ILE A 476 SHEET 3 B 5 LEU A 526 LYS A 532 -1 O LEU A 526 N ASN A 521 SHEET 4 B 5 GLY A 591 PRO A 599 -1 O PHE A 596 N ILE A 529 SHEET 5 B 5 ILE A 582 ILE A 587 -1 N ASP A 585 O THR A 593 LINK OD1 ASN A 503 MG MG A 701 1555 1555 2.06 LINK MG MG A 701 O1G ATP A 703 1555 1555 2.00 LINK MG MG A 701 O1B ATP A 703 1555 1555 2.06 LINK MG MG A 701 O1A ATP A 703 1555 1555 2.14 LINK MG MG A 701 O HOH A 804 1555 1555 2.17 LINK MG MG A 701 O HOH A 805 1555 1555 2.08 LINK MG MG A 702 O HOH A 801 1555 1555 2.11 LINK MG MG A 702 O HOH A 802 1555 1555 2.13 LINK MG MG A 702 O HOH A 803 1555 1555 2.15 SITE 1 AC1 4 ASN A 503 ATP A 703 HOH A 804 HOH A 805 SITE 1 AC2 3 HOH A 801 HOH A 802 HOH A 803 SITE 1 AC3 26 ASN A 503 TYR A 507 ASP A 533 GLY A 537 SITE 2 AC3 26 ILE A 538 VAL A 546 TYR A 551 ARG A 552 SITE 3 AC3 26 VAL A 553 THR A 564 GLY A 565 LEU A 566 SITE 4 AC3 26 GLY A 567 LEU A 568 THR A 592 MG A 701 SITE 5 AC3 26 HOH A 804 HOH A 805 HOH A 808 HOH A 810 SITE 6 AC3 26 HOH A 811 HOH A 813 HOH A 814 HOH A 822 SITE 7 AC3 26 HOH A 859 HOH A 890 CRYST1 59.040 59.040 99.310 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016938 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010069 0.00000