HEADER HYDROLASE 26-JUN-11 3SLU TITLE CRYSTAL STRUCTURE OF NMB0315 COMPND MOL_ID: 1; COMPND 2 MOLECULE: M23 PEPTIDASE DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 54-410; COMPND 5 SYNONYM: OUTER MEMBRANE PROTEIN NMB0315; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 862513; SOURCE 4 STRAIN: ATCC 13091; SOURCE 5 GENE: HMPREF0602_0018; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OUTER MEMBRANE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHEN,X.WANG,X.YANG,H.XU REVDAT 2 20-MAR-24 3SLU 1 REMARK SEQADV LINK REVDAT 1 01-FEB-12 3SLU 0 JRNL AUTH X.WANG,X.YANG,C.YANG,Z.WU,H.XU,Y.SHEN JRNL TITL CRYSTAL STRUCTURE OF OUTER MEMBRANE PROTEIN NMB0315 FROM JRNL TITL 2 NEISSERIA MENINGITIDIS. JRNL REF PLOS ONE V. 6 26845 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 22046377 JRNL DOI 10.1371/JOURNAL.PONE.0026845 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2335835.340 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.7 REMARK 3 NUMBER OF REFLECTIONS : 31954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3648 REMARK 3 BIN R VALUE (WORKING SET) : 0.4320 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 198 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.90000 REMARK 3 B22 (A**2) : 47.20000 REMARK 3 B33 (A**2) : -27.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : 0.79 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.630 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.550 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.690 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.180 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.380 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 42.01 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3SLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-10; 13-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0; 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRF; SSRF REMARK 200 BEAMLINE : BL17U; BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794; 0.9794 REMARK 200 MONOCHROMATOR : GRAPHITE; GRAPHITE REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 20000, 0.1M TRIS-HCL, 2% 1,4 REMARK 280 -DIOXANE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.2K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.84000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.84000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 PRO A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 GLY A 54 REMARK 465 GLY A 55 REMARK 465 SER A 56 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 GLU A 98 REMARK 465 ALA A 99 REMARK 465 ASP A 100 REMARK 465 LEU A 101 REMARK 465 GLU A 246 REMARK 465 GLY A 247 REMARK 465 GLY A 248 REMARK 465 GLY A 249 REMARK 465 GLU A 263 REMARK 465 LYS A 264 REMARK 465 GLY A 265 REMARK 465 GLY B 50 REMARK 465 PRO B 51 REMARK 465 GLY B 52 REMARK 465 SER B 53 REMARK 465 GLY B 54 REMARK 465 GLY B 55 REMARK 465 SER B 56 REMARK 465 GLY B 57 REMARK 465 GLU B 246 REMARK 465 GLY B 247 REMARK 465 GLY B 248 REMARK 465 GLY B 249 REMARK 465 GLY B 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 ASP A 244 CG OD1 OD2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 ARG A 259 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 268 CG OD1 ND2 REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 368 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 410 CG CD OE1 NE2 REMARK 470 ARG B 85 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 SER B 195 OG REMARK 470 ASP B 244 CG OD1 OD2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 GLU B 263 CG CD OE1 OE2 REMARK 470 ARG B 368 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 103 -64.14 -144.53 REMARK 500 GLN A 108 -150.67 -147.89 REMARK 500 SER A 109 127.27 -173.67 REMARK 500 LYS A 166 -82.02 -125.47 REMARK 500 THR A 167 -82.94 -68.90 REMARK 500 ALA A 220 -169.25 -160.21 REMARK 500 SER A 243 -165.48 -175.93 REMARK 500 ASP A 244 -176.66 62.18 REMARK 500 PHE A 267 80.61 -69.59 REMARK 500 LEU A 272 -177.12 -178.02 REMARK 500 THR A 296 28.88 -75.72 REMARK 500 ASP A 313 -156.07 -60.86 REMARK 500 LYS A 319 130.44 -177.58 REMARK 500 HIS A 333 18.68 -65.02 REMARK 500 ALA A 334 -174.00 68.32 REMARK 500 ASN A 335 15.19 53.70 REMARK 500 PHE A 347 -134.79 -88.69 REMARK 500 SER A 348 1.25 -179.17 REMARK 500 GLN A 349 88.33 39.16 REMARK 500 GLN A 351 -166.01 -52.53 REMARK 500 SER A 365 43.55 -143.19 REMARK 500 THR A 370 -77.38 -67.96 REMARK 500 HIS A 373 169.45 171.69 REMARK 500 ASN A 381 25.19 31.80 REMARK 500 PRO A 384 132.21 -28.80 REMARK 500 ASN A 386 107.39 -45.72 REMARK 500 SER A 389 21.73 43.36 REMARK 500 VAL A 390 -58.39 -128.69 REMARK 500 ALA A 400 0.08 -67.47 REMARK 500 ASP A 401 -67.42 -129.36 REMARK 500 LYS A 402 -58.90 -11.01 REMARK 500 LYS B 94 -18.67 178.37 REMARK 500 GLU B 98 -137.89 -60.04 REMARK 500 ALA B 99 -136.35 -83.02 REMARK 500 ASP B 100 29.65 -69.55 REMARK 500 ARG B 102 127.10 -35.88 REMARK 500 HIS B 103 -63.96 -121.52 REMARK 500 GLN B 108 -155.64 -171.34 REMARK 500 ASP B 130 90.78 -50.13 REMARK 500 ALA B 149 146.45 -177.29 REMARK 500 LYS B 166 -78.19 -113.71 REMARK 500 THR B 167 -67.01 -94.85 REMARK 500 HIS B 333 12.61 -62.10 REMARK 500 ALA B 334 89.12 49.09 REMARK 500 ASN B 335 22.93 156.61 REMARK 500 SER B 365 36.71 -142.51 REMARK 500 ARG B 368 94.45 -67.45 REMARK 500 VAL B 388 -63.15 -26.08 REMARK 500 ALA B 391 44.97 -142.08 REMARK 500 LYS B 402 -35.96 -24.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 1 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 ASP A 299 OD2 96.6 REMARK 620 3 HIS A 375 ND1 100.4 94.1 REMARK 620 4 HOH A 443 O 101.2 109.6 145.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 2 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 295 NE2 REMARK 620 2 ASP B 299 OD2 86.8 REMARK 620 3 HIS B 375 ND1 109.0 90.3 REMARK 620 4 HOH B 462 O 151.9 92.9 99.2 REMARK 620 5 HOH B 463 O 83.0 151.3 118.5 84.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 2 DBREF 3SLU A 54 420 UNP E0N688 E0N688_NEIME 54 420 DBREF 3SLU B 54 420 UNP E0N688 E0N688_NEIME 54 420 SEQADV 3SLU GLY A 50 UNP E0N688 EXPRESSION TAG SEQADV 3SLU PRO A 51 UNP E0N688 EXPRESSION TAG SEQADV 3SLU GLY A 52 UNP E0N688 EXPRESSION TAG SEQADV 3SLU SER A 53 UNP E0N688 EXPRESSION TAG SEQADV 3SLU GLY B 50 UNP E0N688 EXPRESSION TAG SEQADV 3SLU PRO B 51 UNP E0N688 EXPRESSION TAG SEQADV 3SLU GLY B 52 UNP E0N688 EXPRESSION TAG SEQADV 3SLU SER B 53 UNP E0N688 EXPRESSION TAG SEQRES 1 A 371 GLY PRO GLY SER GLY GLY SER GLY VAL GLN THR ALA TYR SEQRES 2 A 371 TRP VAL GLN GLU ALA VAL GLN PRO GLY ASP SER LEU ALA SEQRES 3 A 371 ASP VAL LEU ALA ARG SER GLY MET ALA ARG ASP GLU ILE SEQRES 4 A 371 ALA ARG ILE THR GLU LYS TYR GLY GLY GLU ALA ASP LEU SEQRES 5 A 371 ARG HIS LEU ARG ALA ASP GLN SER VAL HIS VAL LEU VAL SEQRES 6 A 371 GLY GLY ASP GLY GLY ALA ARG GLU VAL GLN PHE PHE THR SEQRES 7 A 371 ASP GLU ASP GLY GLU ARG ASN LEU VAL ALA LEU GLU LYS SEQRES 8 A 371 LYS GLY GLY ILE TRP ARG ARG SER ALA SER GLU ALA ASP SEQRES 9 A 371 MET LYS VAL LEU PRO THR LEU ARG SER VAL VAL VAL LYS SEQRES 10 A 371 THR SER ALA ARG GLY SER LEU ALA ARG ALA GLU VAL PRO SEQRES 11 A 371 VAL GLU ILE ARG GLU SER LEU SER GLY ILE PHE ALA GLY SEQRES 12 A 371 ARG PHE SER LEU ASP GLY LEU LYS GLU GLY ASP ALA VAL SEQRES 13 A 371 ARG LEU ILE TYR ASP SER LEU TYR PHE HIS GLY GLN GLN SEQRES 14 A 371 VAL ALA ALA GLY ASP ILE LEU ALA ALA GLU VAL VAL LYS SEQRES 15 A 371 GLY GLY THR ARG HIS GLN ALA PHE TYR TYR ARG SER ASP SEQRES 16 A 371 LYS GLU GLY GLY GLY GLY GLY ASN TYR TYR ASP GLU ASP SEQRES 17 A 371 GLY ARG VAL LEU GLN GLU LYS GLY GLY PHE ASN ILE GLU SEQRES 18 A 371 PRO LEU VAL TYR THR ARG ILE SER SER PRO PHE GLY TYR SEQRES 19 A 371 ARG MET HIS PRO ILE LEU HIS THR TRP ARG LEU HIS THR SEQRES 20 A 371 GLY ILE ASP TYR ALA ALA PRO GLN GLY THR PRO VAL ARG SEQRES 21 A 371 ALA SER ALA ASP GLY VAL ILE THR PHE LYS GLY ARG LYS SEQRES 22 A 371 GLY GLY TYR GLY ASN ALA VAL MET ILE ARG HIS ALA ASN SEQRES 23 A 371 GLY VAL GLU THR LEU TYR ALA HIS LEU SER ALA PHE SER SEQRES 24 A 371 GLN ALA GLN GLY ASN VAL ARG GLY GLY GLU VAL ILE GLY SEQRES 25 A 371 PHE VAL GLY SER THR GLY ARG SER THR GLY PRO HIS LEU SEQRES 26 A 371 HIS TYR GLU ALA ARG ILE ASN GLY GLN PRO VAL ASN PRO SEQRES 27 A 371 VAL SER VAL ALA LEU PRO THR PRO GLU LEU THR GLN ALA SEQRES 28 A 371 ASP LYS ALA ALA PHE ALA ALA GLN LYS GLN LYS ALA ASP SEQRES 29 A 371 ALA LEU LEU ALA ARG LEU ARG SEQRES 1 B 371 GLY PRO GLY SER GLY GLY SER GLY VAL GLN THR ALA TYR SEQRES 2 B 371 TRP VAL GLN GLU ALA VAL GLN PRO GLY ASP SER LEU ALA SEQRES 3 B 371 ASP VAL LEU ALA ARG SER GLY MET ALA ARG ASP GLU ILE SEQRES 4 B 371 ALA ARG ILE THR GLU LYS TYR GLY GLY GLU ALA ASP LEU SEQRES 5 B 371 ARG HIS LEU ARG ALA ASP GLN SER VAL HIS VAL LEU VAL SEQRES 6 B 371 GLY GLY ASP GLY GLY ALA ARG GLU VAL GLN PHE PHE THR SEQRES 7 B 371 ASP GLU ASP GLY GLU ARG ASN LEU VAL ALA LEU GLU LYS SEQRES 8 B 371 LYS GLY GLY ILE TRP ARG ARG SER ALA SER GLU ALA ASP SEQRES 9 B 371 MET LYS VAL LEU PRO THR LEU ARG SER VAL VAL VAL LYS SEQRES 10 B 371 THR SER ALA ARG GLY SER LEU ALA ARG ALA GLU VAL PRO SEQRES 11 B 371 VAL GLU ILE ARG GLU SER LEU SER GLY ILE PHE ALA GLY SEQRES 12 B 371 ARG PHE SER LEU ASP GLY LEU LYS GLU GLY ASP ALA VAL SEQRES 13 B 371 ARG LEU ILE TYR ASP SER LEU TYR PHE HIS GLY GLN GLN SEQRES 14 B 371 VAL ALA ALA GLY ASP ILE LEU ALA ALA GLU VAL VAL LYS SEQRES 15 B 371 GLY GLY THR ARG HIS GLN ALA PHE TYR TYR ARG SER ASP SEQRES 16 B 371 LYS GLU GLY GLY GLY GLY GLY ASN TYR TYR ASP GLU ASP SEQRES 17 B 371 GLY ARG VAL LEU GLN GLU LYS GLY GLY PHE ASN ILE GLU SEQRES 18 B 371 PRO LEU VAL TYR THR ARG ILE SER SER PRO PHE GLY TYR SEQRES 19 B 371 ARG MET HIS PRO ILE LEU HIS THR TRP ARG LEU HIS THR SEQRES 20 B 371 GLY ILE ASP TYR ALA ALA PRO GLN GLY THR PRO VAL ARG SEQRES 21 B 371 ALA SER ALA ASP GLY VAL ILE THR PHE LYS GLY ARG LYS SEQRES 22 B 371 GLY GLY TYR GLY ASN ALA VAL MET ILE ARG HIS ALA ASN SEQRES 23 B 371 GLY VAL GLU THR LEU TYR ALA HIS LEU SER ALA PHE SER SEQRES 24 B 371 GLN ALA GLN GLY ASN VAL ARG GLY GLY GLU VAL ILE GLY SEQRES 25 B 371 PHE VAL GLY SER THR GLY ARG SER THR GLY PRO HIS LEU SEQRES 26 B 371 HIS TYR GLU ALA ARG ILE ASN GLY GLN PRO VAL ASN PRO SEQRES 27 B 371 VAL SER VAL ALA LEU PRO THR PRO GLU LEU THR GLN ALA SEQRES 28 B 371 ASP LYS ALA ALA PHE ALA ALA GLN LYS GLN LYS ALA ASP SEQRES 29 B 371 ALA LEU LEU ALA ARG LEU ARG HET NI A 1 1 HET NI B 2 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 2(NI 2+) FORMUL 5 HOH *76(H2 O) HELIX 1 1 SER A 73 SER A 81 1 9 HELIX 2 2 ALA A 84 GLU A 93 1 10 HELIX 3 3 SER A 150 ALA A 152 5 3 HELIX 4 4 SER A 168 ALA A 176 1 9 HELIX 5 5 PRO A 179 ALA A 191 1 13 HELIX 6 6 GLY A 323 TYR A 325 5 3 HELIX 7 7 THR A 398 ALA A 417 1 20 HELIX 8 8 ARG A 418 ARG A 420 5 3 HELIX 9 9 SER B 73 SER B 81 1 9 HELIX 10 10 ALA B 84 GLU B 93 1 10 HELIX 11 11 SER B 168 ALA B 176 1 9 HELIX 12 12 PRO B 179 PHE B 190 1 12 HELIX 13 13 GLY B 323 TYR B 325 5 3 HELIX 14 14 ALA B 400 ALA B 417 1 18 SHEET 1 A 5 TYR A 62 ALA A 67 0 SHEET 2 A 5 SER A 109 VAL A 114 -1 O VAL A 114 N TYR A 62 SHEET 3 A 5 ALA A 120 THR A 127 -1 O ARG A 121 N LEU A 113 SHEET 4 A 5 GLU A 132 LYS A 141 -1 O VAL A 136 N PHE A 125 SHEET 5 A 5 ILE A 144 ARG A 147 -1 O ARG A 146 N GLU A 139 SHEET 1 B 6 TYR A 62 ALA A 67 0 SHEET 2 B 6 SER A 109 VAL A 114 -1 O VAL A 114 N TYR A 62 SHEET 3 B 6 ALA A 120 THR A 127 -1 O ARG A 121 N LEU A 113 SHEET 4 B 6 GLU A 132 LYS A 141 -1 O VAL A 136 N PHE A 125 SHEET 5 B 6 TRP A 292 HIS A 295 -1 O LEU A 294 N ARG A 133 SHEET 6 B 6 GLY A 282 MET A 285 -1 N GLY A 282 O HIS A 295 SHEET 1 C 5 MET A 154 VAL A 164 0 SHEET 2 C 5 ALA A 204 PHE A 214 -1 O LEU A 207 N ARG A 161 SHEET 3 C 5 GLN A 217 LYS A 231 -1 O GLN A 217 N PHE A 214 SHEET 4 C 5 THR A 234 TYR A 241 -1 O HIS A 236 N VAL A 229 SHEET 5 C 5 ASN A 252 TYR A 254 -1 O TYR A 254 N PHE A 239 SHEET 1 D 6 ARG A 276 SER A 279 0 SHEET 2 D 6 ILE A 298 ALA A 301 -1 O ASP A 299 N SER A 279 SHEET 3 D 6 LEU A 374 ILE A 380 -1 O LEU A 374 N TYR A 300 SHEET 4 D 6 VAL A 337 LEU A 344 -1 N LEU A 340 O GLU A 377 SHEET 5 D 6 ASN A 327 ARG A 332 -1 N VAL A 329 O TYR A 341 SHEET 6 D 6 ILE A 316 ARG A 321 -1 N THR A 317 O MET A 330 SHEET 1 E 4 ARG A 276 SER A 279 0 SHEET 2 E 4 ILE A 298 ALA A 301 -1 O ASP A 299 N SER A 279 SHEET 3 E 4 LEU A 374 ILE A 380 -1 O LEU A 374 N TYR A 300 SHEET 4 E 4 PRO A 384 VAL A 385 -1 O VAL A 385 N ALA A 378 SHEET 1 F 2 PRO A 307 ARG A 309 0 SHEET 2 F 2 VAL A 359 PHE A 362 -1 O GLY A 361 N VAL A 308 SHEET 1 G 5 TYR B 62 ALA B 67 0 SHEET 2 G 5 SER B 109 VAL B 114 -1 O VAL B 112 N VAL B 64 SHEET 3 G 5 ALA B 120 GLU B 129 -1 O ARG B 121 N LEU B 113 SHEET 4 G 5 GLU B 132 LYS B 141 -1 O LEU B 138 N VAL B 123 SHEET 5 G 5 ILE B 144 ARG B 147 -1 O ARG B 146 N GLU B 139 SHEET 1 H 6 TYR B 62 ALA B 67 0 SHEET 2 H 6 SER B 109 VAL B 114 -1 O VAL B 112 N VAL B 64 SHEET 3 H 6 ALA B 120 GLU B 129 -1 O ARG B 121 N LEU B 113 SHEET 4 H 6 GLU B 132 LYS B 141 -1 O LEU B 138 N VAL B 123 SHEET 5 H 6 TRP B 292 LEU B 294 -1 O LEU B 294 N ARG B 133 SHEET 6 H 6 TYR B 283 MET B 285 -1 N ARG B 284 O ARG B 293 SHEET 1 I 5 MET B 154 VAL B 164 0 SHEET 2 I 5 ALA B 204 PHE B 214 -1 O VAL B 205 N VAL B 163 SHEET 3 I 5 GLN B 217 LYS B 231 -1 O GLY B 222 N ASP B 210 SHEET 4 I 5 THR B 234 TYR B 241 -1 O TYR B 240 N LEU B 225 SHEET 5 I 5 ASN B 252 TYR B 254 -1 O ASN B 252 N TYR B 241 SHEET 1 J 7 ARG B 276 ILE B 277 0 SHEET 2 J 7 ILE B 298 ALA B 301 -1 O ALA B 301 N ARG B 276 SHEET 3 J 7 HIS B 373 ILE B 380 -1 O TYR B 376 N ILE B 298 SHEET 4 J 7 VAL B 337 LEU B 344 -1 N GLU B 338 O ARG B 379 SHEET 5 J 7 ASN B 327 ARG B 332 -1 N ASN B 327 O LEU B 344 SHEET 6 J 7 GLY B 314 ARG B 321 -1 N THR B 317 O MET B 330 SHEET 7 J 7 ASN B 353 VAL B 354 -1 O VAL B 354 N GLY B 314 SHEET 1 K 4 ARG B 276 ILE B 277 0 SHEET 2 K 4 ILE B 298 ALA B 301 -1 O ALA B 301 N ARG B 276 SHEET 3 K 4 HIS B 373 ILE B 380 -1 O TYR B 376 N ILE B 298 SHEET 4 K 4 GLN B 383 VAL B 385 -1 O GLN B 383 N ILE B 380 SHEET 1 L 3 PRO B 307 ARG B 309 0 SHEET 2 L 3 VAL B 359 PHE B 362 -1 O GLY B 361 N VAL B 308 SHEET 3 L 3 ALA B 346 PHE B 347 -1 N ALA B 346 O PHE B 362 LINK NI NI A 1 NE2 HIS A 295 1555 1555 2.20 LINK NI NI A 1 OD2 ASP A 299 1555 1555 2.34 LINK NI NI A 1 ND1 HIS A 375 1555 1555 2.25 LINK NI NI A 1 O HOH A 443 1555 1555 2.23 LINK NI NI B 2 NE2 HIS B 295 1555 1555 2.23 LINK NI NI B 2 OD2 ASP B 299 1555 1555 2.26 LINK NI NI B 2 ND1 HIS B 375 1555 1555 2.24 LINK NI NI B 2 O HOH B 462 1555 1555 2.19 LINK NI NI B 2 O HOH B 463 1555 1555 2.09 SITE 1 AC1 4 HIS A 295 ASP A 299 HIS A 375 HOH A 443 SITE 1 AC2 5 HIS B 295 ASP B 299 HIS B 375 HOH B 462 SITE 2 AC2 5 HOH B 463 CRYST1 195.680 75.500 81.640 90.00 94.66 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005110 0.000000 0.000416 0.00000 SCALE2 0.000000 0.013245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012290 0.00000