data_3SMD # _entry.id 3SMD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3SMD RCSB RCSB066380 WWPDB D_1000066380 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2011-07-20 _pdbx_database_PDB_obs_spr.pdb_id 3SMD _pdbx_database_PDB_obs_spr.replace_pdb_id 3EDS _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB 11181D . unspecified TargetDB NYSGXRC-11181d . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SMD _pdbx_database_status.recvd_initial_deposition_date 2011-06-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Palani, K.' 1 ? 'Kumaran, D.' 2 ? 'Burley, S.K.' 3 0000-0002-2487-9713 'Swaminathan, S.' 4 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 5 ? # _citation.id primary _citation.title 'Crystal structure of a mut/nudix family protein from bacillus thuringiensis' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Palani, K.' 1 ? primary 'Kumaran, D.' 2 ? primary 'Burley, S.K.' 3 0000-0002-2487-9713 primary 'Swaminathan, S.' 4 ? # _cell.entry_id 3SMD _cell.length_a 64.000 _cell.length_b 64.000 _cell.length_c 59.010 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SMD _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MutT/NUDIX family protein' 17589.748 1 ? ? ? ? 2 water nat water 18.015 124 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLSLYYKKIREQLGHELIF(MSE)PSVAAVIKNEQGELLFQYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGL KVQVKKQKGVFGGKEFRYTYANGDKVEYIVVVFECEITSGKLKSIDGESLKLQYFSFSEKPPLALPYPDKIFLEGHHHHH H ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLSLYYKKIREQLGHELIFMPSVAAVIKNEQGELLFQYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQVKKQK GVFGGKEFRYTYANGDKVEYIVVVFECEITSGKLKSIDGESLKLQYFSFSEKPPLALPYPDKIFLEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11181d # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 LEU n 1 6 TYR n 1 7 TYR n 1 8 LYS n 1 9 LYS n 1 10 ILE n 1 11 ARG n 1 12 GLU n 1 13 GLN n 1 14 LEU n 1 15 GLY n 1 16 HIS n 1 17 GLU n 1 18 LEU n 1 19 ILE n 1 20 PHE n 1 21 MSE n 1 22 PRO n 1 23 SER n 1 24 VAL n 1 25 ALA n 1 26 ALA n 1 27 VAL n 1 28 ILE n 1 29 LYS n 1 30 ASN n 1 31 GLU n 1 32 GLN n 1 33 GLY n 1 34 GLU n 1 35 LEU n 1 36 LEU n 1 37 PHE n 1 38 GLN n 1 39 TYR n 1 40 PRO n 1 41 GLY n 1 42 GLY n 1 43 GLU n 1 44 TYR n 1 45 TRP n 1 46 SER n 1 47 LEU n 1 48 PRO n 1 49 ALA n 1 50 GLY n 1 51 ALA n 1 52 ILE n 1 53 GLU n 1 54 PRO n 1 55 GLY n 1 56 GLU n 1 57 THR n 1 58 PRO n 1 59 GLU n 1 60 GLU n 1 61 ALA n 1 62 VAL n 1 63 ILE n 1 64 ARG n 1 65 GLU n 1 66 VAL n 1 67 TRP n 1 68 GLU n 1 69 GLU n 1 70 THR n 1 71 GLY n 1 72 LEU n 1 73 LYS n 1 74 VAL n 1 75 GLN n 1 76 VAL n 1 77 LYS n 1 78 LYS n 1 79 GLN n 1 80 LYS n 1 81 GLY n 1 82 VAL n 1 83 PHE n 1 84 GLY n 1 85 GLY n 1 86 LYS n 1 87 GLU n 1 88 PHE n 1 89 ARG n 1 90 TYR n 1 91 THR n 1 92 TYR n 1 93 ALA n 1 94 ASN n 1 95 GLY n 1 96 ASP n 1 97 LYS n 1 98 VAL n 1 99 GLU n 1 100 TYR n 1 101 ILE n 1 102 VAL n 1 103 VAL n 1 104 VAL n 1 105 PHE n 1 106 GLU n 1 107 CYS n 1 108 GLU n 1 109 ILE n 1 110 THR n 1 111 SER n 1 112 GLY n 1 113 LYS n 1 114 LEU n 1 115 LYS n 1 116 SER n 1 117 ILE n 1 118 ASP n 1 119 GLY n 1 120 GLU n 1 121 SER n 1 122 LEU n 1 123 LYS n 1 124 LEU n 1 125 GLN n 1 126 TYR n 1 127 PHE n 1 128 SER n 1 129 PHE n 1 130 SER n 1 131 GLU n 1 132 LYS n 1 133 PRO n 1 134 PRO n 1 135 LEU n 1 136 ALA n 1 137 LEU n 1 138 PRO n 1 139 TYR n 1 140 PRO n 1 141 ASP n 1 142 LYS n 1 143 ILE n 1 144 PHE n 1 145 LEU n 1 146 GLU n 1 147 GLY n 1 148 HIS n 1 149 HIS n 1 150 HIS n 1 151 HIS n 1 152 HIS n 1 153 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene balh_2480 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Al Hakam' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus thuringiensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 412694 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21(de3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX3 (BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3SMD _struct_ref.pdbx_db_accession 3SMD _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSLSLYYKKIREQLGHELIFMPSVAAVIKNEQGELLFQYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQVKKQK GVFGGKEFRYTYANGDKVEYIVVVFECEITSGKLKSIDGESLKLQYFSFSEKPPLALPYPDKIFLEGHHHHHH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SMD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3SMD _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 153 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 153 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3SMD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M HEPES-Na, 10% isopropanal, 20% PEG4000 , pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2008-08-17 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(III)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9205 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9205 # _reflns.entry_id 3SMD _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.76 _reflns.number_obs 14215 _reflns.number_all 14215 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.0 _reflns.B_iso_Wilson_estimate 15.2 _reflns.pdbx_redundancy 21.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.76 _reflns_shell.d_res_low 1.82 _reflns_shell.percent_possible_all 94.9 _reflns_shell.Rmerge_I_obs 0.447 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.pdbx_redundancy 18.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1324 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SMD _refine.ls_number_reflns_obs 13825 _refine.ls_number_reflns_all 14215 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 123240.09 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.40 _refine.ls_d_res_high 1.76 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.259 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 696 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.1 _refine.aniso_B[1][1] 2.86 _refine.aniso_B[2][2] 2.86 _refine.aniso_B[3][3] -5.71 _refine.aniso_B[1][2] 1.05 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.357741 _refine.solvent_model_param_bsol 46.869 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3SMD _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.12 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1084 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1208 _refine_hist.d_res_high 1.76 _refine_hist.d_res_low 40.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.006 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.5 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 24.3 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 0.81 ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.76 _refine_ls_shell.d_res_low 1.87 _refine_ls_shell.number_reflns_R_work 2001 _refine_ls_shell.R_factor_R_work 0.253 _refine_ls_shell.percent_reflns_obs 91.0 _refine_ls_shell.R_factor_R_free 0.294 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 carbohydrate.param carbohydrate.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3SMD _struct.title 'Crystal structure of a mut/nudix family protein from bacillus thuringiensis' _struct.pdbx_descriptor 'MutT/NUDIX family protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SMD _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.text ;Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, Mut/NUDIX protein, Protein Structure Initiative II(PSI II), 11181d, Hydrolase, Unknown Function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? GLY A 15 ? SER A 4 GLY A 15 1 ? 12 HELX_P HELX_P2 2 THR A 57 ? GLY A 71 ? THR A 57 GLY A 71 1 ? 15 HELX_P HELX_P3 3 GLY A 85 ? GLU A 87 ? GLY A 85 GLU A 87 5 ? 3 HELX_P HELX_P4 4 SER A 128 ? LYS A 132 ? SER A 128 LYS A 132 5 ? 5 HELX_P HELX_P5 5 PRO A 140 ? LEU A 145 ? PRO A 140 LEU A 145 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 20 C ? ? ? 1_555 A MSE 21 N ? ? A PHE 20 A MSE 21 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 21 C ? ? ? 1_555 A PRO 22 N ? ? A MSE 21 A PRO 22 1_555 ? ? ? ? ? ? ? 1.344 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 49 ? ALA A 51 ? ALA A 49 ALA A 51 A 2 ILE A 19 ? ILE A 28 ? ILE A 19 ILE A 28 A 3 LYS A 97 ? GLY A 112 ? LYS A 97 GLY A 112 A 4 LEU A 72 ? PHE A 83 ? LEU A 72 PHE A 83 B 1 ALA A 49 ? ALA A 51 ? ALA A 49 ALA A 51 B 2 ILE A 19 ? ILE A 28 ? ILE A 19 ILE A 28 B 3 LYS A 97 ? GLY A 112 ? LYS A 97 GLY A 112 B 4 ARG A 89 ? THR A 91 ? ARG A 89 THR A 91 C 1 LEU A 35 ? GLN A 38 ? LEU A 35 GLN A 38 C 2 LEU A 124 ? PHE A 127 ? LEU A 124 PHE A 127 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 50 ? O GLY A 50 N VAL A 24 ? N VAL A 24 A 2 3 N MSE A 21 ? N MSE A 21 O GLU A 99 ? O GLU A 99 A 3 4 O VAL A 104 ? O VAL A 104 N LYS A 80 ? N LYS A 80 B 1 2 O GLY A 50 ? O GLY A 50 N VAL A 24 ? N VAL A 24 B 2 3 N MSE A 21 ? N MSE A 21 O GLU A 99 ? O GLU A 99 B 3 4 O VAL A 98 ? O VAL A 98 N TYR A 90 ? N TYR A 90 C 1 2 N LEU A 35 ? N LEU A 35 O PHE A 127 ? O PHE A 127 # _database_PDB_matrix.entry_id 3SMD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3SMD _atom_sites.fract_transf_matrix[1][1] 0.015625 _atom_sites.fract_transf_matrix[1][2] 0.009021 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018042 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016946 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 MSE 21 21 21 MSE MSE A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 GLY 41 41 ? ? ? A . n A 1 42 GLY 42 42 ? ? ? A . n A 1 43 GLU 43 43 ? ? ? A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 SER 116 116 ? ? ? A . n A 1 117 ILE 117 117 ? ? ? A . n A 1 118 ASP 118 118 ? ? ? A . n A 1 119 GLY 119 119 ? ? ? A . n A 1 120 GLU 120 120 ? ? ? A . n A 1 121 SER 121 121 ? ? ? A . n A 1 122 LEU 122 122 ? ? ? A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 GLU 146 146 ? ? ? A . n A 1 147 GLY 147 147 ? ? ? A . n A 1 148 HIS 148 148 ? ? ? A . n A 1 149 HIS 149 149 ? ? ? A . n A 1 150 HIS 150 150 ? ? ? A . n A 1 151 HIS 151 151 ? ? ? A . n A 1 152 HIS 152 152 ? ? ? A . n A 1 153 HIS 153 153 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 500 500 HOH TIP A . B 2 HOH 2 501 501 HOH TIP A . B 2 HOH 3 502 502 HOH TIP A . B 2 HOH 4 503 503 HOH TIP A . B 2 HOH 5 504 504 HOH TIP A . B 2 HOH 6 505 505 HOH TIP A . B 2 HOH 7 506 506 HOH TIP A . B 2 HOH 8 507 507 HOH TIP A . B 2 HOH 9 508 508 HOH TIP A . B 2 HOH 10 509 509 HOH TIP A . B 2 HOH 11 510 510 HOH TIP A . B 2 HOH 12 511 511 HOH TIP A . B 2 HOH 13 512 512 HOH TIP A . B 2 HOH 14 513 513 HOH TIP A . B 2 HOH 15 514 514 HOH TIP A . B 2 HOH 16 515 515 HOH TIP A . B 2 HOH 17 516 516 HOH TIP A . B 2 HOH 18 517 517 HOH TIP A . B 2 HOH 19 518 518 HOH TIP A . B 2 HOH 20 519 519 HOH TIP A . B 2 HOH 21 520 520 HOH TIP A . B 2 HOH 22 521 521 HOH TIP A . B 2 HOH 23 522 522 HOH TIP A . B 2 HOH 24 523 523 HOH TIP A . B 2 HOH 25 524 524 HOH TIP A . B 2 HOH 26 525 525 HOH TIP A . B 2 HOH 27 526 526 HOH TIP A . B 2 HOH 28 527 527 HOH TIP A . B 2 HOH 29 528 528 HOH TIP A . B 2 HOH 30 529 529 HOH TIP A . B 2 HOH 31 530 530 HOH TIP A . B 2 HOH 32 531 531 HOH TIP A . B 2 HOH 33 532 532 HOH TIP A . B 2 HOH 34 533 533 HOH TIP A . B 2 HOH 35 534 534 HOH TIP A . B 2 HOH 36 535 535 HOH TIP A . B 2 HOH 37 536 536 HOH TIP A . B 2 HOH 38 537 537 HOH TIP A . B 2 HOH 39 538 538 HOH TIP A . B 2 HOH 40 539 539 HOH TIP A . B 2 HOH 41 540 540 HOH TIP A . B 2 HOH 42 541 541 HOH TIP A . B 2 HOH 43 542 542 HOH TIP A . B 2 HOH 44 543 543 HOH TIP A . B 2 HOH 45 544 544 HOH TIP A . B 2 HOH 46 545 545 HOH TIP A . B 2 HOH 47 546 546 HOH TIP A . B 2 HOH 48 547 547 HOH TIP A . B 2 HOH 49 548 548 HOH TIP A . B 2 HOH 50 549 549 HOH TIP A . B 2 HOH 51 550 550 HOH TIP A . B 2 HOH 52 551 551 HOH TIP A . B 2 HOH 53 552 552 HOH TIP A . B 2 HOH 54 553 553 HOH TIP A . B 2 HOH 55 554 554 HOH TIP A . B 2 HOH 56 556 556 HOH TIP A . B 2 HOH 57 557 557 HOH TIP A . B 2 HOH 58 558 558 HOH TIP A . B 2 HOH 59 559 559 HOH TIP A . B 2 HOH 60 560 560 HOH TIP A . B 2 HOH 61 561 561 HOH TIP A . B 2 HOH 62 562 562 HOH TIP A . B 2 HOH 63 565 565 HOH TIP A . B 2 HOH 64 566 566 HOH TIP A . B 2 HOH 65 567 567 HOH TIP A . B 2 HOH 66 568 568 HOH TIP A . B 2 HOH 67 569 569 HOH TIP A . B 2 HOH 68 570 570 HOH TIP A . B 2 HOH 69 571 571 HOH TIP A . B 2 HOH 70 572 572 HOH TIP A . B 2 HOH 71 573 573 HOH TIP A . B 2 HOH 72 574 574 HOH TIP A . B 2 HOH 73 575 575 HOH TIP A . B 2 HOH 74 576 576 HOH TIP A . B 2 HOH 75 577 577 HOH TIP A . B 2 HOH 76 578 578 HOH TIP A . B 2 HOH 77 579 579 HOH TIP A . B 2 HOH 78 580 580 HOH TIP A . B 2 HOH 79 581 581 HOH TIP A . B 2 HOH 80 582 582 HOH TIP A . B 2 HOH 81 583 583 HOH TIP A . B 2 HOH 82 584 584 HOH TIP A . B 2 HOH 83 585 585 HOH TIP A . B 2 HOH 84 586 586 HOH TIP A . B 2 HOH 85 587 587 HOH TIP A . B 2 HOH 86 588 588 HOH TIP A . B 2 HOH 87 589 589 HOH TIP A . B 2 HOH 88 590 590 HOH TIP A . B 2 HOH 89 591 591 HOH TIP A . B 2 HOH 90 592 592 HOH TIP A . B 2 HOH 91 593 593 HOH TIP A . B 2 HOH 92 594 594 HOH TIP A . B 2 HOH 93 595 595 HOH TIP A . B 2 HOH 94 596 596 HOH TIP A . B 2 HOH 95 597 597 HOH TIP A . B 2 HOH 96 598 598 HOH TIP A . B 2 HOH 97 599 599 HOH TIP A . B 2 HOH 98 600 600 HOH TIP A . B 2 HOH 99 601 601 HOH TIP A . B 2 HOH 100 602 602 HOH TIP A . B 2 HOH 101 603 603 HOH TIP A . B 2 HOH 102 604 604 HOH TIP A . B 2 HOH 103 605 605 HOH TIP A . B 2 HOH 104 606 606 HOH TIP A . B 2 HOH 105 607 607 HOH TIP A . B 2 HOH 106 608 608 HOH TIP A . B 2 HOH 107 609 609 HOH TIP A . B 2 HOH 108 610 610 HOH TIP A . B 2 HOH 109 611 611 HOH TIP A . B 2 HOH 110 612 612 HOH TIP A . B 2 HOH 111 613 613 HOH TIP A . B 2 HOH 112 614 614 HOH TIP A . B 2 HOH 113 615 615 HOH TIP A . B 2 HOH 114 616 616 HOH TIP A . B 2 HOH 115 617 617 HOH TIP A . B 2 HOH 116 618 618 HOH TIP A . B 2 HOH 117 619 619 HOH TIP A . B 2 HOH 118 620 620 HOH TIP A . B 2 HOH 119 621 621 HOH TIP A . B 2 HOH 120 622 622 HOH TIP A . B 2 HOH 121 623 623 HOH TIP A . B 2 HOH 122 624 624 HOH TIP A . B 2 HOH 123 625 625 HOH TIP A . B 2 HOH 124 626 626 HOH TIP A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 21 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 21 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2030 ? 2 MORE -15 ? 2 'SSA (A^2)' 13850 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_764 -x+2,-x+y+1,-z-1/3 -0.5000000000 -0.8660254038 0.0000000000 96.0000000000 -0.8660254038 0.5000000000 0.0000000000 55.4256258422 0.0000000000 0.0000000000 -1.0000000000 -19.6700000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-20 2 'Structure model' 1 1 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation_author 3 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.identifier_ORCID' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SHELXD phasing . ? 2 SHARP phasing . ? 3 ARP/wARP 'model building' . ? 4 CNS refinement 1.1 ? 5 HKL-2000 'data reduction' . ? 6 HKL-2000 'data scaling' . ? 7 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A GLY 41 ? A GLY 41 4 1 Y 1 A GLY 42 ? A GLY 42 5 1 Y 1 A GLU 43 ? A GLU 43 6 1 Y 1 A SER 116 ? A SER 116 7 1 Y 1 A ILE 117 ? A ILE 117 8 1 Y 1 A ASP 118 ? A ASP 118 9 1 Y 1 A GLY 119 ? A GLY 119 10 1 Y 1 A GLU 120 ? A GLU 120 11 1 Y 1 A SER 121 ? A SER 121 12 1 Y 1 A LEU 122 ? A LEU 122 13 1 Y 1 A GLU 146 ? A GLU 146 14 1 Y 1 A GLY 147 ? A GLY 147 15 1 Y 1 A HIS 148 ? A HIS 148 16 1 Y 1 A HIS 149 ? A HIS 149 17 1 Y 1 A HIS 150 ? A HIS 150 18 1 Y 1 A HIS 151 ? A HIS 151 19 1 Y 1 A HIS 152 ? A HIS 152 20 1 Y 1 A HIS 153 ? A HIS 153 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #