HEADER TRANSFERASE 28-JUN-11 3SMT TITLE CRYSTAL STRUCTURE OF HUMAN SET DOMAIN-CONTAINING PROTEIN3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET DOMAIN-CONTAINING PROTEIN 3; COMPND 5 EC: 2.1.1.43; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD3, C14ORF154; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)V2RPRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS SETD3, HISTONE METHYLTRANSFERASE, HISTONE MODIFICATION, LYSINE, POST- KEYWDS 2 TRANSLATIONAL MODIFICATION, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.ZENG,J.R.WALKER,P.LOPPNAU,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 2 08-NOV-17 3SMT 1 REMARK REVDAT 1 20-JUL-11 3SMT 0 JRNL AUTH H.ZENG,A.DONG,J.R.WALKER,P.LOPPNAU,C.BOUNTRA,J.WEIGELT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,H.WU JRNL TITL CRYSTAL STRUCTURE OF HUMAN SET DOMAIN-CONTAINING PROTEIN3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 40086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.060 REMARK 3 FREE R VALUE TEST SET COUNT : 824 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2897 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2360 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2847 REMARK 3 BIN R VALUE (WORKING SET) : 0.2353 REMARK 3 BIN FREE R VALUE : 0.2791 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 50 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.29400 REMARK 3 B22 (A**2) : -1.29400 REMARK 3 B33 (A**2) : 2.58800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.284 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3837 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5218 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1298 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 97 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 563 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3831 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 501 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4728 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.94 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.94 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VERIMAX HR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 40.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.94200 REMARK 200 R SYM FOR SHELL (I) : 0.94200 REMARK 200 FOR SHELL : 2.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG4000, 0.2 M CALCIUM ACETATE, REMARK 280 0.1 M SODIUM CACODALYTE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.85667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.71333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.71333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.85667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.71333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 THR A 18 REMARK 465 VAL A 19 REMARK 465 PRO A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 GLY A 43 REMARK 465 GLN A 224 REMARK 465 THR A 225 REMARK 465 HIS A 226 REMARK 465 PRO A 227 REMARK 465 GLU A 493 REMARK 465 GLU A 494 REMARK 465 LYS A 495 REMARK 465 ALA A 496 REMARK 465 PRO A 497 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ILE A 24 CG1 CG2 CD1 REMARK 470 LEU A 25 CG CD1 CD2 REMARK 470 ASN A 26 CG OD1 ND2 REMARK 470 LEU A 32 CD1 CD2 REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 SER A 37 OG REMARK 470 LYS A 44 CE NZ REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ILE A 52 CD1 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 ILE A 59 CG1 CG2 CD1 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 83 CD CE NZ REMARK 470 LYS A 101 CD CE NZ REMARK 470 GLU A 102 OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 VAL A 137 CG1 CG2 REMARK 470 LEU A 141 CG CD1 CD2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 202 CD1 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 HIS A 228 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 230 CG OD1 ND2 REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 LYS A 235 CD CE NZ REMARK 470 ASP A 236 CG OD1 OD2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 265 CG1 CG2 REMARK 470 LEU A 289 CG CD1 CD2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 ARG A 303 NE CZ NH1 NH2 REMARK 470 LYS A 339 CD CE NZ REMARK 470 LYS A 344 CD CE NZ REMARK 470 GLU A 414 CD OE1 OE2 REMARK 470 LYS A 441 CD CE NZ REMARK 470 LYS A 452 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 64 36.66 -98.59 REMARK 500 GLU A 116 0.38 80.16 REMARK 500 LEU A 272 -63.06 75.45 REMARK 500 THR A 314 45.97 -82.24 REMARK 500 ASP A 405 97.61 -69.80 REMARK 500 PHE A 415 70.97 -119.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 4001 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARS A 498 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARS A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1001 DBREF 3SMT A 1 497 UNP Q86TU7 SETD3_HUMAN 2 498 SEQRES 1 A 497 GLY LYS LYS SER ARG VAL LYS THR GLN LYS SER GLY THR SEQRES 2 A 497 GLY ALA THR ALA THR VAL SER PRO LYS GLU ILE LEU ASN SEQRES 3 A 497 LEU THR SER GLU LEU LEU GLN LYS CYS SER SER PRO ALA SEQRES 4 A 497 PRO GLY PRO GLY LYS GLU TRP GLU GLU TYR VAL GLN ILE SEQRES 5 A 497 ARG THR LEU VAL GLU LYS ILE ARG LYS LYS GLN LYS GLY SEQRES 6 A 497 LEU SER VAL THR PHE ASP GLY LYS ARG GLU ASP TYR PHE SEQRES 7 A 497 PRO ASP LEU MSE LYS TRP ALA SER GLU ASN GLY ALA SER SEQRES 8 A 497 VAL GLU GLY PHE GLU MSE VAL ASN PHE LYS GLU GLU GLY SEQRES 9 A 497 PHE GLY LEU ARG ALA THR ARG ASP ILE LYS ALA GLU GLU SEQRES 10 A 497 LEU PHE LEU TRP VAL PRO ARG LYS LEU LEU MSE THR VAL SEQRES 11 A 497 GLU SER ALA LYS ASN SER VAL LEU GLY PRO LEU TYR SER SEQRES 12 A 497 GLN ASP ARG ILE LEU GLN ALA MSE GLY ASN ILE ALA LEU SEQRES 13 A 497 ALA PHE HIS LEU LEU CYS GLU ARG ALA SER PRO ASN SER SEQRES 14 A 497 PHE TRP GLN PRO TYR ILE GLN THR LEU PRO SER GLU TYR SEQRES 15 A 497 ASP THR PRO LEU TYR PHE GLU GLU ASP GLU VAL ARG TYR SEQRES 16 A 497 LEU GLN SER THR GLN ALA ILE HIS ASP VAL PHE SER GLN SEQRES 17 A 497 TYR LYS ASN THR ALA ARG GLN TYR ALA TYR PHE TYR LYS SEQRES 18 A 497 VAL ILE GLN THR HIS PRO HIS ALA ASN LYS LEU PRO LEU SEQRES 19 A 497 LYS ASP SER PHE THR TYR GLU ASP TYR ARG TRP ALA VAL SEQRES 20 A 497 SER SER VAL MSE THR ARG GLN ASN GLN ILE PRO THR GLU SEQRES 21 A 497 ASP GLY SER ARG VAL THR LEU ALA LEU ILE PRO LEU TRP SEQRES 22 A 497 ASP MSE CYS ASN HIS THR ASN GLY LEU ILE THR THR GLY SEQRES 23 A 497 TYR ASN LEU GLU ASP ASP ARG CYS GLU CYS VAL ALA LEU SEQRES 24 A 497 GLN ASP PHE ARG ALA GLY GLU GLN ILE TYR ILE PHE TYR SEQRES 25 A 497 GLY THR ARG SER ASN ALA GLU PHE VAL ILE HIS SER GLY SEQRES 26 A 497 PHE PHE PHE ASP ASN ASN SER HIS ASP ARG VAL LYS ILE SEQRES 27 A 497 LYS LEU GLY VAL SER LYS SER ASP ARG LEU TYR ALA MSE SEQRES 28 A 497 LYS ALA GLU VAL LEU ALA ARG ALA GLY ILE PRO THR SER SEQRES 29 A 497 SER VAL PHE ALA LEU HIS PHE THR GLU PRO PRO ILE SER SEQRES 30 A 497 ALA GLN LEU LEU ALA PHE LEU ARG VAL PHE CYS MSE THR SEQRES 31 A 497 GLU GLU GLU LEU LYS GLU HIS LEU LEU GLY ASP SER ALA SEQRES 32 A 497 ILE ASP ARG ILE PHE THR LEU GLY ASN SER GLU PHE PRO SEQRES 33 A 497 VAL SER TRP ASP ASN GLU VAL LYS LEU TRP THR PHE LEU SEQRES 34 A 497 GLU ASP ARG ALA SER LEU LEU LEU LYS THR TYR LYS THR SEQRES 35 A 497 THR ILE GLU GLU ASP LYS SER VAL LEU LYS ASN HIS ASP SEQRES 36 A 497 LEU SER VAL ARG ALA LYS MSE ALA ILE LYS LEU ARG LEU SEQRES 37 A 497 GLY GLU LYS GLU ILE LEU GLU LYS ALA VAL LYS SER ALA SEQRES 38 A 497 ALA VAL ASN ARG GLU TYR TYR ARG GLN GLN MSE GLU GLU SEQRES 39 A 497 LYS ALA PRO MODRES 3SMT MSE A 82 MET SELENOMETHIONINE MODRES 3SMT MSE A 97 MET SELENOMETHIONINE MODRES 3SMT MSE A 128 MET SELENOMETHIONINE MODRES 3SMT MSE A 151 MET SELENOMETHIONINE MODRES 3SMT MSE A 251 MET SELENOMETHIONINE MODRES 3SMT MSE A 275 MET SELENOMETHIONINE MODRES 3SMT MSE A 351 MET SELENOMETHIONINE MODRES 3SMT MSE A 389 MET SELENOMETHIONINE MODRES 3SMT MSE A 462 MET SELENOMETHIONINE MODRES 3SMT MSE A 492 MET SELENOMETHIONINE HET MSE A 82 8 HET MSE A 97 8 HET MSE A 128 8 HET MSE A 151 8 HET MSE A 251 8 HET MSE A 275 8 HET MSE A 351 8 HET MSE A 389 8 HET MSE A 462 8 HET MSE A 492 8 HET SAM A1000 27 HET ARS A 498 1 HET ARS A 499 1 HET PG4 A4001 7 HET ACT A 500 4 HET ACT A1001 4 HET UNX A 501 1 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HETNAM MSE SELENOMETHIONINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ARS ARSENIC HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM ACT ACETATE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 ARS 2(AS) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 UNX 11(X) FORMUL 19 HOH *301(H2 O) HELIX 1 1 SER A 20 CYS A 35 1 16 HELIX 2 2 LYS A 44 LYS A 62 1 19 HELIX 3 3 LYS A 73 ASP A 76 5 4 HELIX 4 4 TYR A 77 ASN A 88 1 12 HELIX 5 5 LYS A 125 LEU A 127 5 3 HELIX 6 6 VAL A 130 ASN A 135 1 6 HELIX 7 7 LEU A 138 ASP A 145 1 8 HELIX 8 8 ASP A 145 MSE A 151 1 7 HELIX 9 9 MSE A 151 ALA A 165 1 15 HELIX 10 10 TRP A 171 GLN A 176 1 6 HELIX 11 11 THR A 184 PHE A 188 5 5 HELIX 12 12 GLU A 189 TYR A 195 1 7 HELIX 13 13 GLN A 200 ILE A 223 1 24 HELIX 14 14 THR A 239 GLN A 254 1 16 HELIX 15 15 LEU A 272 CYS A 276 5 5 HELIX 16 16 SER A 316 GLY A 325 1 10 HELIX 17 17 LEU A 348 ALA A 359 1 12 HELIX 18 18 SER A 377 CYS A 388 1 12 HELIX 19 19 THR A 390 GLY A 400 1 11 HELIX 20 20 SER A 418 THR A 439 1 22 HELIX 21 21 THR A 443 LEU A 451 1 9 HELIX 22 22 SER A 457 GLN A 490 1 34 SHEET 1 A 4 PHE A 95 PHE A 100 0 SHEET 2 A 4 GLY A 104 ALA A 109 -1 O ARG A 108 N GLU A 96 SHEET 3 A 4 GLN A 307 ILE A 310 -1 O ILE A 308 N LEU A 107 SHEET 4 A 4 ASN A 277 HIS A 278 1 N ASN A 277 O ILE A 310 SHEET 1 B 3 LEU A 118 PRO A 123 0 SHEET 2 B 3 ARG A 293 ALA A 298 -1 O CYS A 296 N LEU A 120 SHEET 3 B 3 ILE A 283 ASN A 288 -1 N GLY A 286 O GLU A 295 SHEET 1 C 3 MSE A 128 THR A 129 0 SHEET 2 C 3 VAL A 265 LEU A 269 -1 O LEU A 269 N MSE A 128 SHEET 3 C 3 ASN A 255 PRO A 258 -1 N ILE A 257 O THR A 266 SHEET 1 D 2 ARG A 335 GLY A 341 0 SHEET 2 D 2 SER A 364 HIS A 370 -1 O PHE A 367 N ILE A 338 LINK C LEU A 81 N MSE A 82 1555 1555 1.34 LINK C MSE A 82 N LYS A 83 1555 1555 1.36 LINK C GLU A 96 N MSE A 97 1555 1555 1.34 LINK C MSE A 97 N VAL A 98 1555 1555 1.34 LINK C LEU A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N THR A 129 1555 1555 1.34 LINK C ALA A 150 N MSE A 151 1555 1555 1.35 LINK C MSE A 151 N GLY A 152 1555 1555 1.34 LINK C VAL A 250 N MSE A 251 1555 1555 1.34 LINK C MSE A 251 N THR A 252 1555 1555 1.36 LINK C ASP A 274 N MSE A 275 1555 1555 1.36 LINK C MSE A 275 N CYS A 276 1555 1555 1.37 LINK C ALA A 350 N MSE A 351 1555 1555 1.35 LINK C MSE A 351 N LYS A 352 1555 1555 1.35 LINK C CYS A 388 N MSE A 389 1555 1555 1.33 LINK C MSE A 389 N THR A 390 1555 1555 1.34 LINK C LYS A 461 N MSE A 462 1555 1555 1.34 LINK C MSE A 462 N ALA A 463 1555 1555 1.37 LINK C GLN A 491 N MSE A 492 1555 1555 1.34 CISPEP 1 GLU A 373 PRO A 374 0 -7.33 SITE 1 AC1 21 ARG A 74 GLU A 102 GLU A 103 PHE A 105 SITE 2 AC1 21 THR A 252 ARG A 253 ASP A 274 MSE A 275 SITE 3 AC1 21 CYS A 276 ASN A 277 HIS A 278 TYR A 312 SITE 4 AC1 21 SER A 324 PHE A 326 PHE A 328 HOH A 515 SITE 5 AC1 21 HOH A 545 HOH A 569 HOH A 603 HOH A 762 SITE 6 AC1 21 HOH A 794 SITE 1 AC2 1 CYS A 296 SITE 1 AC3 1 CYS A 294 SITE 1 AC4 8 PHE A 100 ARG A 108 GLY A 305 GLU A 306 SITE 2 AC4 8 GLN A 307 ASP A 455 HOH A 525 HOH A 718 SITE 1 AC5 6 PHE A 367 ALA A 368 SER A 377 GLN A 379 SITE 2 AC5 6 HOH A 753 HOH A 789 SITE 1 AC6 6 LEU A 340 GLY A 341 PHE A 387 PHE A 428 SITE 2 AC6 6 ARG A 432 HOH A 655 CRYST1 113.864 113.864 83.570 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008782 0.005071 0.000000 0.00000 SCALE2 0.000000 0.010141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011966 0.00000