HEADER ENDOCYTOSIS 29-JUN-11 3SNH TITLE CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE HUMAN DYNAMIN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNAMIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 6-746; COMPND 5 EC: 3.6.5.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNM, DNM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET46-EK/LIC KEYWDS ENDOCYTOSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FAELBER,O.DAUMKE REVDAT 4 13-SEP-23 3SNH 1 SEQADV REVDAT 3 01-MAY-13 3SNH 1 REMARK REVDAT 2 26-OCT-11 3SNH 1 JRNL REVDAT 1 21-SEP-11 3SNH 0 JRNL AUTH K.FAELBER,Y.POSOR,S.GAO,M.HELD,Y.ROSKE,D.SCHULZE,V.HAUCKE, JRNL AUTH 2 F.NOE,O.DAUMKE JRNL TITL CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE DYNAMIN. JRNL REF NATURE V. 477 556 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21927000 JRNL DOI 10.1038/NATURE10369 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.290 REMARK 3 R VALUE (WORKING SET) : 0.288 REMARK 3 FREE R VALUE : 0.331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.4830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 111.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 176.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.18000 REMARK 3 B22 (A**2) : -8.74000 REMARK 3 B33 (A**2) : 1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.918 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 162.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5360 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3781 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7203 ; 0.982 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9203 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 640 ; 3.237 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;38.023 ;24.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1039 ;17.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;18.125 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 815 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5808 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1051 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2722 -56.8590 65.4237 REMARK 3 T TENSOR REMARK 3 T11: 0.2702 T22: 0.4298 REMARK 3 T33: 0.2691 T12: -0.1330 REMARK 3 T13: -0.0638 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1262 L22: 1.3922 REMARK 3 L33: 1.6225 L12: -0.0602 REMARK 3 L13: 0.3759 L23: -0.2955 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.1412 S13: -0.0708 REMARK 3 S21: 0.0960 S22: -0.0578 S23: 0.1235 REMARK 3 S31: -0.2617 S32: 0.3736 S33: 0.0769 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 32 REMARK 3 RESIDUE RANGE : A 295 A 314 REMARK 3 RESIDUE RANGE : A 716 A 746 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6102 -29.9207 58.3461 REMARK 3 T TENSOR REMARK 3 T11: 0.7574 T22: 0.3382 REMARK 3 T33: 0.1661 T12: -0.3289 REMARK 3 T13: -0.1357 T23: -0.1052 REMARK 3 L TENSOR REMARK 3 L11: 1.0758 L22: 0.6718 REMARK 3 L33: 0.5544 L12: -0.8480 REMARK 3 L13: 0.2530 L23: -0.1657 REMARK 3 S TENSOR REMARK 3 S11: -0.3886 S12: 0.0061 S13: 0.1830 REMARK 3 S21: 0.3054 S22: 0.0618 S23: -0.1333 REMARK 3 S31: -0.4347 S32: -0.0280 S33: 0.3267 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 499 REMARK 3 RESIDUE RANGE : A 653 A 708 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4886 -10.8368 5.0855 REMARK 3 T TENSOR REMARK 3 T11: 0.2545 T22: 0.4167 REMARK 3 T33: 0.2243 T12: -0.0084 REMARK 3 T13: 0.0373 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 1.8276 L22: 1.2311 REMARK 3 L33: 3.0761 L12: 0.0812 REMARK 3 L13: -2.1314 L23: -0.9276 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: 0.0527 S13: -0.3176 REMARK 3 S21: 0.0853 S22: -0.0837 S23: 0.0712 REMARK 3 S31: -0.0194 S32: -0.0462 S33: 0.2368 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 518 A 631 REMARK 3 ORIGIN FOR THE GROUP (A): 66.1764 -29.7839 8.3597 REMARK 3 T TENSOR REMARK 3 T11: 0.3460 T22: 0.3486 REMARK 3 T33: 0.2803 T12: -0.0439 REMARK 3 T13: 0.0590 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 2.0505 L22: 0.6655 REMARK 3 L33: 0.8646 L12: 0.4299 REMARK 3 L13: 0.4916 L23: -0.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.0672 S12: -0.0091 S13: 0.0104 REMARK 3 S21: -0.0361 S22: 0.1998 S23: 0.1035 REMARK 3 S31: 0.0521 S32: 0.0001 S33: -0.1326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE SI-111 CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10214 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66500 REMARK 200 FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRIES 2AKA, 2DYN AND 3LJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG400, 6% ISOPROPANOL, 100 MM REMARK 280 HEPES/NAOH (PH 7.3), 10 MM MGCL2, 10 MM KCL. , VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.50800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.50800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 77.52800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 100.99650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 77.52800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 100.99650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.50800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 77.52800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 100.99650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.50800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 77.52800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 100.99650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 ILE A 63 REMARK 465 VAL A 64 REMARK 465 GLY A 110 REMARK 465 THR A 111 REMARK 465 ASN A 112 REMARK 465 VAL A 143 REMARK 465 PRO A 144 REMARK 465 VAL A 145 REMARK 465 GLY A 146 REMARK 465 ASP A 147 REMARK 465 GLN A 148 REMARK 465 PRO A 149 REMARK 465 SER A 347 REMARK 465 GLY A 348 REMARK 465 ASP A 349 REMARK 465 GLN A 350 REMARK 465 ILE A 351 REMARK 465 ASP A 352 REMARK 465 THR A 353 REMARK 465 TYR A 354 REMARK 465 GLU A 355 REMARK 465 LEU A 356 REMARK 465 ASN A 394 REMARK 465 ALA A 395 REMARK 465 ALA A 396 REMARK 465 ALA A 397 REMARK 465 ALA A 398 REMARK 465 ALA A 399 REMARK 465 THR A 400 REMARK 465 GLY A 401 REMARK 465 LEU A 402 REMARK 465 PHE A 403 REMARK 465 THR A 404 REMARK 465 LEU A 446 REMARK 465 GLN A 447 REMARK 465 GLN A 500 REMARK 465 GLN A 501 REMARK 465 ARG A 502 REMARK 465 SER A 503 REMARK 465 ASN A 504 REMARK 465 GLN A 505 REMARK 465 MET A 506 REMARK 465 ASN A 507 REMARK 465 LYS A 508 REMARK 465 LYS A 509 REMARK 465 LYS A 510 REMARK 465 THR A 511 REMARK 465 SER A 512 REMARK 465 GLY A 513 REMARK 465 ASN A 514 REMARK 465 GLN A 515 REMARK 465 ASP A 516 REMARK 465 GLU A 517 REMARK 465 MET A 534 REMARK 465 LYS A 535 REMARK 465 GLY A 536 REMARK 465 GLY A 537 REMARK 465 GLY A 578 REMARK 465 PHE A 579 REMARK 465 MET A 580 REMARK 465 SER A 581 REMARK 465 ASP A 632 REMARK 465 LYS A 633 REMARK 465 GLU A 634 REMARK 465 LYS A 635 REMARK 465 ALA A 636 REMARK 465 SER A 637 REMARK 465 GLU A 638 REMARK 465 THR A 639 REMARK 465 GLU A 640 REMARK 465 GLU A 641 REMARK 465 ASN A 642 REMARK 465 GLY A 643 REMARK 465 SER A 644 REMARK 465 ASP A 645 REMARK 465 SER A 646 REMARK 465 PHE A 647 REMARK 465 MET A 648 REMARK 465 HIS A 649 REMARK 465 SER A 650 REMARK 465 MET A 651 REMARK 465 ASP A 652 REMARK 465 GLY A 709 REMARK 465 ASP A 710 REMARK 465 GLN A 711 REMARK 465 ASN A 712 REMARK 465 THR A 713 REMARK 465 LEU A 714 REMARK 465 MET A 715 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 241 O ASP A 243 1.84 REMARK 500 O ASN A 131 ND2 ASN A 282 1.98 REMARK 500 O ILE A 201 O GLY A 230 2.00 REMARK 500 O GLN A 17 OG SER A 21 2.06 REMARK 500 O ARG A 724 N MET A 728 2.07 REMARK 500 OD1 ASP A 241 O LYS A 245 2.09 REMARK 500 O LEU A 225 OH TYR A 231 2.12 REMARK 500 O GLU A 457 OG1 THR A 461 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 237 CZ ARG A 237 NH2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 40 -131.07 59.56 REMARK 500 ALA A 42 -127.38 65.32 REMARK 500 ARG A 66 -61.37 -134.85 REMARK 500 GLN A 196 -159.25 -116.11 REMARK 500 ARG A 199 -36.29 -133.17 REMARK 500 GLU A 212 69.75 -34.98 REMARK 500 ASN A 222 -0.69 90.91 REMARK 500 SER A 261 45.11 -96.31 REMARK 500 SER A 264 21.08 -78.87 REMARK 500 TYR A 265 -16.45 -143.71 REMARK 500 ASN A 282 -70.49 -64.79 REMARK 500 LYS A 315 -122.69 64.54 REMARK 500 PHE A 340 -62.45 -104.87 REMARK 500 GLU A 381 -133.91 57.39 REMARK 500 CYS A 442 17.09 -143.22 REMARK 500 LEU A 483 4.24 -62.58 REMARK 500 TYR A 485 -71.10 -134.99 REMARK 500 HIS A 490 -175.71 -65.10 REMARK 500 ARG A 522 140.87 -171.70 REMARK 500 LEU A 526 102.54 -163.78 REMARK 500 GLU A 548 -33.55 -135.84 REMARK 500 TYR A 553 -169.73 -109.15 REMARK 500 GLU A 576 -121.34 58.74 REMARK 500 GLU A 592 -65.82 -95.05 REMARK 500 LYS A 598 -135.58 58.37 REMARK 500 LEU A 688 -79.21 -89.13 REMARK 500 SER A 699 -36.46 -130.69 REMARK 500 ILE A 745 72.19 47.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 237 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DBREF 3SNH A 6 746 UNP Q05193 DYN1_HUMAN 6 746 SEQADV 3SNH GLY A 4 UNP Q05193 EXPRESSION TAG SEQADV 3SNH PRO A 5 UNP Q05193 EXPRESSION TAG SEQADV 3SNH ALA A 395 UNP Q05193 ILE 395 ENGINEERED MUTATION SEQADV 3SNH ALA A 396 UNP Q05193 HIS 396 ENGINEERED MUTATION SEQADV 3SNH ALA A 397 UNP Q05193 GLY 397 ENGINEERED MUTATION SEQADV 3SNH ALA A 398 UNP Q05193 ILE 398 ENGINEERED MUTATION SEQADV 3SNH ALA A 399 UNP Q05193 ARG 399 ENGINEERED MUTATION SEQADV 3SNH GLU A 562 UNP Q05193 LYS 562 ENGINEERED MUTATION SEQRES 1 A 743 GLY PRO MET GLU ASP LEU ILE PRO LEU VAL ASN ARG LEU SEQRES 2 A 743 GLN ASP ALA PHE SER ALA ILE GLY GLN ASN ALA ASP LEU SEQRES 3 A 743 ASP LEU PRO GLN ILE ALA VAL VAL GLY GLY GLN SER ALA SEQRES 4 A 743 GLY LYS SER SER VAL LEU GLU ASN PHE VAL GLY ARG ASP SEQRES 5 A 743 PHE LEU PRO ARG GLY SER GLY ILE VAL THR ARG ARG PRO SEQRES 6 A 743 LEU VAL LEU GLN LEU VAL ASN ALA THR THR GLU TYR ALA SEQRES 7 A 743 GLU PHE LEU HIS CYS LYS GLY LYS LYS PHE THR ASP PHE SEQRES 8 A 743 GLU GLU VAL ARG LEU GLU ILE GLU ALA GLU THR ASP ARG SEQRES 9 A 743 VAL THR GLY THR ASN LYS GLY ILE SER PRO VAL PRO ILE SEQRES 10 A 743 ASN LEU ARG VAL TYR SER PRO HIS VAL LEU ASN LEU THR SEQRES 11 A 743 LEU VAL ASP LEU PRO GLY MET THR LYS VAL PRO VAL GLY SEQRES 12 A 743 ASP GLN PRO PRO ASP ILE GLU PHE GLN ILE ARG ASP MET SEQRES 13 A 743 LEU MET GLN PHE VAL THR LYS GLU ASN CYS LEU ILE LEU SEQRES 14 A 743 ALA VAL SER PRO ALA ASN SER ASP LEU ALA ASN SER ASP SEQRES 15 A 743 ALA LEU LYS VAL ALA LYS GLU VAL ASP PRO GLN GLY GLN SEQRES 16 A 743 ARG THR ILE GLY VAL ILE THR LYS LEU ASP LEU MET ASP SEQRES 17 A 743 GLU GLY THR ASP ALA ARG ASP VAL LEU GLU ASN LYS LEU SEQRES 18 A 743 LEU PRO LEU ARG ARG GLY TYR ILE GLY VAL VAL ASN ARG SEQRES 19 A 743 SER GLN LYS ASP ILE ASP GLY LYS LYS ASP ILE THR ALA SEQRES 20 A 743 ALA LEU ALA ALA GLU ARG LYS PHE PHE LEU SER HIS PRO SEQRES 21 A 743 SER TYR ARG HIS LEU ALA ASP ARG MET GLY THR PRO TYR SEQRES 22 A 743 LEU GLN LYS VAL LEU ASN GLN GLN LEU THR ASN HIS ILE SEQRES 23 A 743 ARG ASP THR LEU PRO GLY LEU ARG ASN LYS LEU GLN SER SEQRES 24 A 743 GLN LEU LEU SER ILE GLU LYS GLU VAL GLU GLU TYR LYS SEQRES 25 A 743 ASN PHE ARG PRO ASP ASP PRO ALA ARG LYS THR LYS ALA SEQRES 26 A 743 LEU LEU GLN MET VAL GLN GLN PHE ALA VAL ASP PHE GLU SEQRES 27 A 743 LYS ARG ILE GLU GLY SER GLY ASP GLN ILE ASP THR TYR SEQRES 28 A 743 GLU LEU SER GLY GLY ALA ARG ILE ASN ARG ILE PHE HIS SEQRES 29 A 743 GLU ARG PHE PRO PHE GLU LEU VAL LYS MET GLU PHE ASP SEQRES 30 A 743 GLU LYS GLU LEU ARG ARG GLU ILE SER TYR ALA ILE LYS SEQRES 31 A 743 ASN ALA ALA ALA ALA ALA THR GLY LEU PHE THR PRO ASP SEQRES 32 A 743 MET ALA PHE GLU THR ILE VAL LYS LYS GLN VAL LYS LYS SEQRES 33 A 743 ILE ARG GLU PRO CYS LEU LYS CYS VAL ASP MET VAL ILE SEQRES 34 A 743 SER GLU LEU ILE SER THR VAL ARG GLN CYS THR LYS LYS SEQRES 35 A 743 LEU GLN GLN TYR PRO ARG LEU ARG GLU GLU MET GLU ARG SEQRES 36 A 743 ILE VAL THR THR HIS ILE ARG GLU ARG GLU GLY ARG THR SEQRES 37 A 743 LYS GLU GLN VAL MET LEU LEU ILE ASP ILE GLU LEU ALA SEQRES 38 A 743 TYR MET ASN THR ASN HIS GLU ASP PHE ILE GLY PHE ALA SEQRES 39 A 743 ASN ALA GLN GLN ARG SER ASN GLN MET ASN LYS LYS LYS SEQRES 40 A 743 THR SER GLY ASN GLN ASP GLU ILE LEU VAL ILE ARG LYS SEQRES 41 A 743 GLY TRP LEU THR ILE ASN ASN ILE GLY ILE MET LYS GLY SEQRES 42 A 743 GLY SER LYS GLU TYR TRP PHE VAL LEU THR ALA GLU ASN SEQRES 43 A 743 LEU SER TRP TYR LYS ASP ASP GLU GLU LYS GLU LYS GLU SEQRES 44 A 743 TYR MET LEU SER VAL ASP ASN LEU LYS LEU ARG ASP VAL SEQRES 45 A 743 GLU LYS GLY PHE MET SER SER LYS HIS ILE PHE ALA LEU SEQRES 46 A 743 PHE ASN THR GLU GLN ARG ASN VAL TYR LYS ASP TYR ARG SEQRES 47 A 743 GLN LEU GLU LEU ALA CYS GLU THR GLN GLU GLU VAL ASP SEQRES 48 A 743 SER TRP LYS ALA SER PHE LEU ARG ALA GLY VAL TYR PRO SEQRES 49 A 743 GLU ARG VAL GLY ASP LYS GLU LYS ALA SER GLU THR GLU SEQRES 50 A 743 GLU ASN GLY SER ASP SER PHE MET HIS SER MET ASP PRO SEQRES 51 A 743 GLN LEU GLU ARG GLN VAL GLU THR ILE ARG ASN LEU VAL SEQRES 52 A 743 ASP SER TYR MET ALA ILE VAL ASN LYS THR VAL ARG ASP SEQRES 53 A 743 LEU MET PRO LYS THR ILE MET HIS LEU MET ILE ASN ASN SEQRES 54 A 743 THR LYS GLU PHE ILE PHE SER GLU LEU LEU ALA ASN LEU SEQRES 55 A 743 TYR SER CYS GLY ASP GLN ASN THR LEU MET GLU GLU SER SEQRES 56 A 743 ALA GLU GLN ALA GLN ARG ARG ASP GLU MET LEU ARG MET SEQRES 57 A 743 TYR HIS ALA LEU LYS GLU ALA LEU SER ILE ILE GLY ASP SEQRES 58 A 743 ILE ASN HELIX 1 1 MET A 6 ALA A 22 1 17 HELIX 2 2 LYS A 44 GLY A 53 1 10 HELIX 3 3 PHE A 94 THR A 109 1 16 HELIX 4 4 PRO A 150 LYS A 166 1 17 HELIX 5 5 SER A 184 ASP A 194 1 11 HELIX 6 6 ASP A 218 LYS A 223 1 6 HELIX 7 7 ILE A 248 HIS A 262 1 15 HELIX 8 8 GLY A 273 ASP A 291 1 19 HELIX 9 9 THR A 292 TYR A 314 1 23 HELIX 10 10 ASP A 321 ILE A 344 1 24 HELIX 11 11 GLY A 358 GLU A 378 1 21 HELIX 12 12 LYS A 382 LYS A 393 1 12 HELIX 13 13 ASP A 406 LYS A 444 1 39 HELIX 14 14 PRO A 450 MET A 486 1 37 HELIX 15 15 GLN A 610 ALA A 623 1 14 HELIX 16 16 GLN A 654 CYS A 708 1 55 HELIX 17 17 SER A 718 GLY A 743 1 26 SHEET 1 A 8 GLU A 79 HIS A 85 0 SHEET 2 A 8 PRO A 119 SER A 126 -1 O TYR A 125 N TYR A 80 SHEET 3 A 8 PRO A 68 ALA A 76 1 N GLN A 72 O VAL A 124 SHEET 4 A 8 VAL A 129 THR A 141 -1 O LEU A 134 N LEU A 71 SHEET 5 A 8 GLN A 33 VAL A 37 1 N VAL A 36 O VAL A 135 SHEET 6 A 8 ASN A 168 ALA A 177 1 O LEU A 170 N ALA A 35 SHEET 7 A 8 ARG A 199 LYS A 206 1 O VAL A 203 N SER A 175 SHEET 8 A 8 ARG A 229 VAL A 235 1 O ILE A 232 N ILE A 204 SHEET 1 B 4 ILE A 521 LEU A 526 0 SHEET 2 B 4 GLU A 540 ALA A 547 -1 O LEU A 545 N ARG A 522 SHEET 3 B 4 ASN A 549 LYS A 554 -1 O SER A 551 N VAL A 544 SHEET 4 B 4 LYS A 561 SER A 566 -1 O LEU A 565 N LEU A 550 SHEET 1 C 3 LEU A 570 GLU A 576 0 SHEET 2 C 3 ILE A 585 ASN A 590 -1 O ALA A 587 N ARG A 573 SHEET 3 C 3 GLN A 602 CYS A 607 -1 O LEU A 603 N LEU A 588 CISPEP 1 ALA A 42 GLY A 43 0 1.81 CISPEP 2 LEU A 224 LEU A 225 0 -0.71 CISPEP 3 PRO A 319 ASP A 320 0 -3.09 CISPEP 4 GLU A 717 SER A 718 0 7.08 CRYST1 155.056 201.993 59.016 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016945 0.00000