HEADER TRANSFERASE 29-JUN-11 3SNO TITLE CRYSTAL STRUCTURE OF A PUTATIVE AMINOTRANSFERASE (NCGL2491) FROM TITLE 2 CORYNEBACTERIUM GLUTAMICUM ATCC 13032 AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE/4-AMINO-4- COMPND 5 DEOXYCHORISMATE LYASE; COMPND 6 EC: 2.6.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 STRAIN: ATCC 13032 KITASATO; SOURCE 5 GENE: CGL2580; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3SNO 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 3SNO 1 JRNL REVDAT 3 25-OCT-17 3SNO 1 REMARK REVDAT 2 24-DEC-14 3SNO 1 TITLE REVDAT 1 20-JUL-11 3SNO 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL AMINOTRANSFERASE JRNL TITL 2 (NCGL2491) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 JRNL TITL 3 KITASATO AT 1.60 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1737 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2646 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2340 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2535 REMARK 3 BIN R VALUE (WORKING SET) : 0.2342 REMARK 3 BIN FREE R VALUE : 0.2314 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 111 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.67660 REMARK 3 B22 (A**2) : -7.17970 REMARK 3 B33 (A**2) : 0.50310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36610 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1996 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2729 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 956 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 41 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 315 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1996 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 274 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2391 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.52 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|10 - A|314 } REMARK 3 ORIGIN FOR THE GROUP (A): 51.3026 35.0874 -3.3230 REMARK 3 T TENSOR REMARK 3 T11: -0.1001 T22: -0.0982 REMARK 3 T33: -0.0445 T12: 0.0040 REMARK 3 T13: 0.0097 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.7657 L22: 1.6581 REMARK 3 L33: 0.5035 L12: 1.0792 REMARK 3 L13: -0.1063 L23: -0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.1551 S12: 0.0186 S13: -0.1213 REMARK 3 S21: -0.2014 S22: 0.0473 S23: -0.0408 REMARK 3 S31: 0.0754 S32: -0.0052 S33: 0.1078 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. 1,2 ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAS REMARK 3 BEEN MODELED IN THE SOLVENT STRUCTURE. 4. RAMACHANDRAN OUTLIER REMARK 3 AT RESIDUE 294 IS IN A REGION OF SUB-OPTIMAL ELECTRON DENSITY. REMARK 3 5. THE STRUCTURE HAS SEVERAL UNMODELED REGIONS WHICH HAVE REMARK 3 ELECTRON DENSITY THAT COULD NOT BE RELIABLY INTERPRETED. IN REMARK 3 ADDITION, THERE ARE THREE REGIONS OF SUB-OPTIMAL MODEL FIT IN REMARK 3 WHICH THE MOST STRUCTURALLY SIMILAR PROTEIN (AS DETERMINED BY REMARK 3 THE PROGRAM SSM), PDB ID 5DAA, WAS USED TO GUIDE THE MODELING. REMARK 3 THESE INCLUDE RESIDUES 143-150, 204-221 AND 291-295. 6. THE REMARK 3 REFINEMENT WAS RESTRAINED WITH THE MAD PHASES. REMARK 4 REMARK 4 3SNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.64 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97949,0.97932 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 30, 2009 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.757 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R MERGE, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0% 2-METHYL-2,4-PENTANEDIOL, 0.1M REMARK 280 CITRIC ACID PH 3.64, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.94950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.29300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.94950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.29300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND SIZE-EXCLUSION CHROMATOGRAPHY REMARK 300 IN COMBINATION WITH STATIC LIGHT SCATTERING SUPPORT THE ASSIGNMENT REMARK 300 OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 139.89900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 ILE A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 ASN A 102 REMARK 465 GLY A 151 REMARK 465 TYR A 152 REMARK 465 SER A 153 REMARK 465 ILE A 154 REMARK 465 ASP A 155 REMARK 465 THR A 156 REMARK 465 GLY A 157 REMARK 465 LEU A 158 REMARK 465 PRO A 159 REMARK 465 GLY A 160 REMARK 465 ILE A 161 REMARK 465 GLY A 162 REMARK 465 LYS A 163 REMARK 465 ALA A 164 REMARK 465 THR A 165 REMARK 465 ARG A 166 REMARK 465 GLY A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 SER A 170 REMARK 465 LYS A 171 REMARK 465 VAL A 172 REMARK 465 GLU A 173 REMARK 465 ARG A 174 REMARK 465 THR A 175 REMARK 465 PRO A 176 REMARK 465 ALA A 177 REMARK 465 PRO A 178 REMARK 465 TRP A 179 REMARK 465 LEU A 180 REMARK 465 THR A 181 REMARK 465 VAL A 182 REMARK 465 GLY A 183 REMARK 465 ALA A 184 REMARK 465 LYS A 185 REMARK 465 THR A 186 REMARK 465 LEU A 187 REMARK 465 ALA A 188 REMARK 465 TYR A 189 REMARK 465 ALA A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 MSE A 193 REMARK 465 ALA A 194 REMARK 465 ALA A 195 REMARK 465 LEU A 196 REMARK 465 ARG A 197 REMARK 465 TYR A 198 REMARK 465 ALA A 199 REMARK 465 LYS A 200 REMARK 465 SER A 201 REMARK 465 ASN A 202 REMARK 465 GLY A 203 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 ILE A 240 REMARK 465 LEU A 241 REMARK 465 PRO A 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 101 C O REMARK 470 SER A 144 OG REMARK 470 VAL A 145 CG1 CG2 REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 204 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 205 CG OD1 OD2 REMARK 470 PHE A 209 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 213 CG OD1 OD2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 HIS A 294 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 34 -36.97 -130.55 REMARK 500 ASP A 56 59.42 39.68 REMARK 500 ASP A 205 82.49 -157.13 REMARK 500 LEU A 216 -82.81 -103.44 REMARK 500 THR A 220 31.82 -143.09 REMARK 500 ASP A 292 -17.56 66.93 REMARK 500 HIS A 294 137.01 61.67 REMARK 500 LEU A 296 39.90 -85.39 REMARK 500 ARG A 297 -159.56 56.03 REMARK 500 LYS A 298 116.63 -160.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394391 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3SNO A 1 314 UNP Q8NMJ3 Q8NMJ3_CORGL 1 314 SEQADV 3SNO GLY A 0 UNP Q8NMJ3 EXPRESSION TAG SEQRES 1 A 315 GLY MSE ALA LEU GLU PRO GLN ILE LYS SER ALA PRO THR SEQRES 2 A 315 PRO VAL ILE LEU ILE VAL GLU PRO TYR GLY GLY SER ILE SEQRES 3 A 315 ARG GLN GLN ASN PRO ASN LEU PRO MSE VAL PHE TRP ASP SEQRES 4 A 315 ASP ALA ALA LEU THR ARG GLY ASP GLY ILE PHE GLU THR SEQRES 5 A 315 LEU LEU ILE ARG ASP GLY HIS ALA CYS ASN VAL ARG ARG SEQRES 6 A 315 HIS GLY GLU ARG PHE LYS ALA SER ALA ALA LEU LEU GLY SEQRES 7 A 315 LEU PRO GLU PRO ILE LEU GLU ASP TRP GLU LYS ALA THR SEQRES 8 A 315 GLN MSE GLY ILE GLU SER TRP TYR SER HIS PRO ASN ALA SEQRES 9 A 315 GLY GLU ALA SER CYS THR TRP THR LEU SER ARG GLY ARG SEQRES 10 A 315 SER SER THR GLY LEU ALA SER GLY TRP LEU THR ILE THR SEQRES 11 A 315 PRO VAL SER SER ASP LYS LEU ALA GLN ARG GLU HIS GLY SEQRES 12 A 315 VAL SER VAL MSE THR SER SER ARG GLY TYR SER ILE ASP SEQRES 13 A 315 THR GLY LEU PRO GLY ILE GLY LYS ALA THR ARG GLY GLU SEQRES 14 A 315 LEU SER LYS VAL GLU ARG THR PRO ALA PRO TRP LEU THR SEQRES 15 A 315 VAL GLY ALA LYS THR LEU ALA TYR ALA ALA ASN MSE ALA SEQRES 16 A 315 ALA LEU ARG TYR ALA LYS SER ASN GLY PHE ASP ASP VAL SEQRES 17 A 315 ILE PHE THR ASP GLY ASP ARG VAL LEU GLU GLY ALA THR SEQRES 18 A 315 SER THR VAL VAL SER PHE LYS GLY ASP LYS ILE ARG THR SEQRES 19 A 315 PRO SER PRO GLY GLY ASP ILE LEU PRO GLY THR THR GLN SEQRES 20 A 315 ALA ALA LEU PHE ALA HIS ALA THR GLU LYS GLY TRP ARG SEQRES 21 A 315 CYS LYS GLU LYS ASP LEU SER ILE ASP ASP LEU PHE GLY SEQRES 22 A 315 ALA ASP SER VAL TRP LEU VAL SER SER VAL ARG GLY PRO SEQRES 23 A 315 VAL ARG VAL THR ARG LEU ASP GLY HIS LYS LEU ARG LYS SEQRES 24 A 315 PRO ASP ASN GLU LYS GLU ILE LYS ALA LEU ILE THR LYS SEQRES 25 A 315 ALA LEU GLY MODRES 3SNO MSE A 34 MET SELENOMETHIONINE MODRES 3SNO MSE A 92 MET SELENOMETHIONINE MODRES 3SNO MSE A 146 MET SELENOMETHIONINE HET MSE A 34 8 HET MSE A 92 8 HET MSE A 146 13 HET EDO A 500 4 HET EDO A 501 4 HET EDO A 502 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 HOH *187(H2 O) HELIX 1 1 ASN A 61 GLY A 77 1 17 HELIX 2 2 ILE A 82 SER A 99 1 18 HELIX 3 3 SER A 132 GLY A 142 1 11 HELIX 4 4 GLY A 243 LYS A 256 1 14 HELIX 5 5 SER A 266 ALA A 273 1 8 HELIX 6 6 ASN A 301 LEU A 313 1 13 SHEET 1 A 6 ILE A 25 GLN A 28 0 SHEET 2 A 6 VAL A 14 VAL A 18 -1 N ILE A 17 O ARG A 26 SHEET 3 A 6 SER A 123 PRO A 130 -1 O ILE A 128 N VAL A 14 SHEET 4 A 6 ALA A 106 SER A 113 -1 N SER A 107 O THR A 129 SHEET 5 A 6 GLY A 47 ARG A 55 -1 N LEU A 52 O CYS A 108 SHEET 6 A 6 HIS A 58 ALA A 59 -1 O HIS A 58 N ARG A 55 SHEET 1 B 8 ARG A 214 GLY A 218 0 SHEET 2 B 8 ASP A 205 ASP A 211 -1 N PHE A 209 O LEU A 216 SHEET 3 B 8 VAL A 143 SER A 149 1 N MSE A 146 O ILE A 208 SHEET 4 B 8 GLY A 284 LEU A 291 1 O ARG A 290 N VAL A 145 SHEET 5 B 8 SER A 275 SER A 280 -1 N VAL A 276 O VAL A 288 SHEET 6 B 8 THR A 222 LYS A 227 -1 N VAL A 224 O TRP A 277 SHEET 7 B 8 LYS A 230 PRO A 234 -1 O ARG A 232 N SER A 225 SHEET 8 B 8 ARG A 259 LYS A 263 1 O LYS A 263 N THR A 233 LINK C PRO A 33 N MSE A 34 1555 1555 1.32 LINK C MSE A 34 N VAL A 35 1555 1555 1.34 LINK C GLN A 91 N MSE A 92 1555 1555 1.34 LINK C MSE A 92 N GLY A 93 1555 1555 1.34 LINK C VAL A 145 N MSE A 146 1555 1555 1.35 LINK C MSE A 146 N THR A 147 1555 1555 1.33 CISPEP 1 PHE A 204 ASP A 205 0 -0.72 SITE 1 AC1 6 ASP A 229 LYS A 256 GLY A 257 TRP A 258 SITE 2 AC1 6 EDO A 501 HOH A 669 SITE 1 AC2 4 GLU A 87 LYS A 88 GLN A 91 EDO A 500 SITE 1 AC3 2 MSE A 34 HOH A 516 CRYST1 139.899 52.586 37.350 90.00 98.92 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007148 0.000000 0.001122 0.00000 SCALE2 0.000000 0.019016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027102 0.00000