data_3SOE # _entry.id 3SOE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SOE pdb_00003soe 10.2210/pdb3soe/pdb RCSB RCSB066451 ? ? WWPDB D_1000066451 ? ? # _pdbx_database_status.entry_id 3SOE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ivarsson, Y.' 1 'Filippakopoulos, P.' 2 'Picaud, S.' 3 'Vollmar, M.' 4 'von Delft, F.' 5 'Arrowsmith, C.H.' 6 'Weigelt, J.' 7 'Edwards, A.' 8 'Bountra, C.' 9 'Knapp, S.' 10 'Zimmermann, P.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title ;Crystal Structure of the 3rd PDZ domain of the human Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 (MAGI3) ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ivarsson, Y.' 1 ? primary 'Filippakopoulos, P.' 2 ? primary 'Picaud, S.' 3 ? primary 'Vollmar, M.' 4 ? primary 'von Delft, F.' 5 ? primary 'Arrowsmith, C.H.' 6 ? primary 'Weigelt, J.' 7 ? primary 'Edwards, A.' 8 ? primary 'Bountra, C.' 9 ? primary 'Knapp, S.' 10 ? primary 'Zimmermann, P.' 11 ? # _cell.length_a 34.630 _cell.length_b 59.280 _cell.length_c 65.350 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3SOE _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3SOE _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3' 12037.209 1 ? ? 'UNP residues 601-691' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 water nat water 18.015 157 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Membrane-associated guanylate kinase inverted 3, MAGI-3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMATLYKKAGLLVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP VGADVPLLILRGGPPSPTKTAKMGSGSGQITKV ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMATLYKKAGLLVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP VGADVPLLILRGGPPSPTKTAKMGSGSGQITKV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 THR n 1 6 LEU n 1 7 TYR n 1 8 LYS n 1 9 LYS n 1 10 ALA n 1 11 GLY n 1 12 LEU n 1 13 LEU n 1 14 VAL n 1 15 THR n 1 16 ILE n 1 17 PRO n 1 18 LEU n 1 19 ILE n 1 20 LYS n 1 21 GLY n 1 22 PRO n 1 23 LYS n 1 24 GLY n 1 25 PHE n 1 26 GLY n 1 27 PHE n 1 28 ALA n 1 29 ILE n 1 30 ALA n 1 31 ASP n 1 32 SER n 1 33 PRO n 1 34 THR n 1 35 GLY n 1 36 GLN n 1 37 LYS n 1 38 VAL n 1 39 LYS n 1 40 MET n 1 41 ILE n 1 42 LEU n 1 43 ASP n 1 44 SER n 1 45 GLN n 1 46 TRP n 1 47 CYS n 1 48 GLN n 1 49 GLY n 1 50 LEU n 1 51 GLN n 1 52 LYS n 1 53 GLY n 1 54 ASP n 1 55 ILE n 1 56 ILE n 1 57 LYS n 1 58 GLU n 1 59 ILE n 1 60 TYR n 1 61 HIS n 1 62 GLN n 1 63 ASN n 1 64 VAL n 1 65 GLN n 1 66 ASN n 1 67 LEU n 1 68 THR n 1 69 HIS n 1 70 LEU n 1 71 GLN n 1 72 VAL n 1 73 VAL n 1 74 GLU n 1 75 VAL n 1 76 LEU n 1 77 LYS n 1 78 GLN n 1 79 PHE n 1 80 PRO n 1 81 VAL n 1 82 GLY n 1 83 ALA n 1 84 ASP n 1 85 VAL n 1 86 PRO n 1 87 LEU n 1 88 LEU n 1 89 ILE n 1 90 LEU n 1 91 ARG n 1 92 GLY n 1 93 GLY n 1 94 PRO n 1 95 PRO n 1 96 SER n 1 97 PRO n 1 98 THR n 1 99 LYS n 1 100 THR n 1 101 ALA n 1 102 LYS n 1 103 MET n 1 104 GLY n 1 105 SER n 1 106 GLY n 1 107 SER n 1 108 GLY n 1 109 GLN n 1 110 ILE n 1 111 THR n 1 112 LYS n 1 113 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KIAA1634, MAGI3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ER2566 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETM-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MAGI3_HUMAN _struct_ref.pdbx_db_accession Q5TCQ9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRG GPPSPTKTAKM ; _struct_ref.pdbx_align_begin 601 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SOE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 103 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5TCQ9 _struct_ref_seq.db_align_beg 601 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 691 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 601 _struct_ref_seq.pdbx_auth_seq_align_end 691 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SOE GLY A 1 ? UNP Q5TCQ9 ? ? 'expression tag' 589 1 1 3SOE ALA A 2 ? UNP Q5TCQ9 ? ? 'expression tag' 590 2 1 3SOE MET A 3 ? UNP Q5TCQ9 ? ? 'expression tag' 591 3 1 3SOE ALA A 4 ? UNP Q5TCQ9 ? ? 'expression tag' 592 4 1 3SOE THR A 5 ? UNP Q5TCQ9 ? ? 'expression tag' 593 5 1 3SOE LEU A 6 ? UNP Q5TCQ9 ? ? 'expression tag' 594 6 1 3SOE TYR A 7 ? UNP Q5TCQ9 ? ? 'expression tag' 595 7 1 3SOE LYS A 8 ? UNP Q5TCQ9 ? ? 'expression tag' 596 8 1 3SOE LYS A 9 ? UNP Q5TCQ9 ? ? 'expression tag' 597 9 1 3SOE ALA A 10 ? UNP Q5TCQ9 ? ? 'expression tag' 598 10 1 3SOE GLY A 11 ? UNP Q5TCQ9 ? ? 'expression tag' 599 11 1 3SOE LEU A 12 ? UNP Q5TCQ9 ? ? 'expression tag' 600 12 1 3SOE GLY A 104 ? UNP Q5TCQ9 ? ? 'expression tag' 692 13 1 3SOE SER A 105 ? UNP Q5TCQ9 ? ? 'expression tag' 693 14 1 3SOE GLY A 106 ? UNP Q5TCQ9 ? ? 'expression tag' 694 15 1 3SOE SER A 107 ? UNP Q5TCQ9 ? ? 'expression tag' 695 16 1 3SOE GLY A 108 ? UNP Q5TCQ9 ? ? 'expression tag' 696 17 1 3SOE GLN A 109 ? UNP Q5TCQ9 ? ? 'expression tag' 697 18 1 3SOE ILE A 110 ? UNP Q5TCQ9 ? ? 'expression tag' 698 19 1 3SOE THR A 111 ? UNP Q5TCQ9 ? ? 'expression tag' 699 20 1 3SOE LYS A 112 ? UNP Q5TCQ9 ? ? 'expression tag' 700 21 1 3SOE VAL A 113 ? UNP Q5TCQ9 ? ? 'expression tag' 701 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3SOE _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.1M Bis-tris pH 6.0 0.25M Li2SO4 35% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2011-06-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.52 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.52 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3SOE _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 22.52 _reflns.number_all 18521 _reflns.number_obs 18132 _reflns.pdbx_netI_over_sigmaI 17.100 _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_redundancy 4.700 _reflns.percent_possible_obs 97.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.B_iso_Wilson_estimate 23.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.600 1.680 ? 9488 ? 0.515 1.500 0.515 ? 3.800 ? 2491 95.000 1 1 1.680 1.780 ? 11430 ? 0.305 2.500 0.305 ? 4.700 ? 2419 96.800 2 1 1.780 1.910 ? 11126 ? 0.178 4.100 0.178 ? 4.800 ? 2320 97.300 3 1 1.910 2.060 ? 10463 ? 0.104 6.900 0.104 ? 4.800 ? 2164 97.800 4 1 2.060 2.260 ? 9861 ? 0.069 9.700 0.069 ? 4.900 ? 2023 99.000 5 1 2.260 2.520 ? 9068 ? 0.051 12.700 0.051 ? 4.900 ? 1844 99.100 6 1 2.520 2.910 ? 8099 ? 0.038 16.000 0.038 ? 4.900 ? 1645 99.700 7 1 2.910 3.570 ? 7012 ? 0.035 16.100 0.035 ? 4.900 ? 1432 100.000 8 1 3.570 5.040 ? 5474 ? 0.031 12.800 0.031 ? 4.800 ? 1139 100.000 9 1 5.040 21.290 ? 2895 ? 0.035 10.400 0.035 ? 4.400 ? 655 98.100 10 1 # _refine.entry_id 3SOE _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 22.5200 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.6400 _refine.ls_number_reflns_obs 18095 _refine.ls_number_reflns_all 18532 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: WITH TLS ADDED' _refine.ls_R_factor_all 0.1894 _refine.ls_R_factor_obs 0.1894 _refine.ls_R_factor_R_work 0.1880 _refine.ls_wR_factor_R_work 0.1832 _refine.ls_R_factor_R_free 0.2164 _refine.ls_wR_factor_R_free 0.2067 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 924 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 23.4798 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 1.1400 _refine.aniso_B[3][3] -1.1400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9460 _refine.overall_SU_R_Cruickshank_DPI 0.0829 _refine.overall_SU_R_free 0.0840 _refine.pdbx_overall_ESU_R_Free 0.0840 _refine.overall_SU_ML 0.0460 _refine.overall_SU_B 2.5030 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Ensemble of 3BPU, 2R4H, 2Q9V' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8922 _refine.B_iso_max 60.720 _refine.B_iso_min 10.560 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 765 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 926 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 22.5200 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d ? 0.015 ? ? ? 'X-RAY DIFFRACTION' r_bond_other_d ? 0.001 ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg ? 1.403 ? ? ? 'X-RAY DIFFRACTION' r_angle_other_deg ? 0.887 ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? 5.469 ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? 37.489 ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? 12.033 ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? 20.595 ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr ? 0.092 ? ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined ? 0.006 ? ? ? 'X-RAY DIFFRACTION' r_gen_planes_other ? 0.001 ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? 1.576 ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? 0.449 ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? 2.740 ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? 4.211 ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? 6.467 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.6360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 91.2600 _refine_ls_shell.number_reflns_R_work 1157 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.5880 _refine_ls_shell.R_factor_R_free 0.6980 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1222 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3SOE _struct.title ;Crystal Structure of the 3rd PDZ domain of the human Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 (MAGI3) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SOE _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'Structural Genomics Consortium, SGC, PDZ domain, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? GLY A 11 ? GLY A 589 GLY A 599 1 ? 11 HELX_P HELX_P2 2 ASP A 43 ? CYS A 47 ? ASP A 631 CYS A 635 5 ? 5 HELX_P HELX_P3 3 THR A 68 ? PHE A 79 ? THR A 656 PHE A 667 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 12 ? ILE A 19 ? LEU A 600 ILE A 607 A 2 ASP A 84 ? ARG A 91 ? ASP A 672 ARG A 679 A 3 ILE A 55 ? ILE A 59 ? ILE A 643 ILE A 647 A 4 GLN A 62 ? ASN A 63 ? GLN A 650 ASN A 651 B 1 GLY A 35 ? ILE A 41 ? GLY A 623 ILE A 629 B 2 PHE A 27 ? SER A 32 ? PHE A 615 SER A 620 B 3 ILE A 110 ? VAL A 113 ? ILE A 698 VAL A 701 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 16 ? N ILE A 604 O LEU A 87 ? O LEU A 675 A 2 3 O LEU A 88 ? O LEU A 676 N LYS A 57 ? N LYS A 645 A 3 4 N ILE A 59 ? N ILE A 647 O GLN A 62 ? O GLN A 650 B 1 2 O LYS A 37 ? O LYS A 625 N ALA A 30 ? N ALA A 618 B 2 3 N PHE A 27 ? N PHE A 615 O VAL A 113 ? O VAL A 701 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id EDO _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE EDO A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH C . ? HOH A 150 . ? 1_555 ? 2 AC1 6 HOH C . ? HOH A 156 . ? 1_555 ? 3 AC1 6 HOH C . ? HOH A 157 . ? 1_555 ? 4 AC1 6 GLY A 11 ? GLY A 599 . ? 1_555 ? 5 AC1 6 GLN A 78 ? GLN A 666 . ? 2_554 ? 6 AC1 6 PRO A 80 ? PRO A 668 . ? 2_554 ? # _atom_sites.entry_id 3SOE _atom_sites.fract_transf_matrix[1][1] 0.028877 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016869 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015302 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 589 589 GLY GLY A . n A 1 2 ALA 2 590 590 ALA ALA A . n A 1 3 MET 3 591 591 MET MET A . n A 1 4 ALA 4 592 592 ALA ALA A . n A 1 5 THR 5 593 593 THR THR A . n A 1 6 LEU 6 594 594 LEU LEU A . n A 1 7 TYR 7 595 595 TYR TYR A . n A 1 8 LYS 8 596 596 LYS LYS A . n A 1 9 LYS 9 597 597 LYS LYS A . n A 1 10 ALA 10 598 598 ALA ALA A . n A 1 11 GLY 11 599 599 GLY GLY A . n A 1 12 LEU 12 600 600 LEU LEU A . n A 1 13 LEU 13 601 601 LEU LEU A . n A 1 14 VAL 14 602 602 VAL VAL A . n A 1 15 THR 15 603 603 THR THR A . n A 1 16 ILE 16 604 604 ILE ILE A . n A 1 17 PRO 17 605 605 PRO PRO A . n A 1 18 LEU 18 606 606 LEU LEU A . n A 1 19 ILE 19 607 607 ILE ILE A . n A 1 20 LYS 20 608 608 LYS LYS A . n A 1 21 GLY 21 609 609 GLY GLY A . n A 1 22 PRO 22 610 610 PRO PRO A . n A 1 23 LYS 23 611 611 LYS LYS A . n A 1 24 GLY 24 612 612 GLY GLY A . n A 1 25 PHE 25 613 613 PHE PHE A . n A 1 26 GLY 26 614 614 GLY GLY A . n A 1 27 PHE 27 615 615 PHE PHE A . n A 1 28 ALA 28 616 616 ALA ALA A . n A 1 29 ILE 29 617 617 ILE ILE A . n A 1 30 ALA 30 618 618 ALA ALA A . n A 1 31 ASP 31 619 619 ASP ASP A . n A 1 32 SER 32 620 620 SER SER A . n A 1 33 PRO 33 621 621 PRO PRO A . n A 1 34 THR 34 622 622 THR THR A . n A 1 35 GLY 35 623 623 GLY GLY A . n A 1 36 GLN 36 624 624 GLN GLN A . n A 1 37 LYS 37 625 625 LYS LYS A . n A 1 38 VAL 38 626 626 VAL VAL A . n A 1 39 LYS 39 627 627 LYS LYS A . n A 1 40 MET 40 628 628 MET MET A . n A 1 41 ILE 41 629 629 ILE ILE A . n A 1 42 LEU 42 630 630 LEU LEU A . n A 1 43 ASP 43 631 631 ASP ASP A . n A 1 44 SER 44 632 632 SER SER A . n A 1 45 GLN 45 633 633 GLN GLN A . n A 1 46 TRP 46 634 634 TRP TRP A . n A 1 47 CYS 47 635 635 CYS CYS A . n A 1 48 GLN 48 636 636 GLN GLN A . n A 1 49 GLY 49 637 637 GLY GLY A . n A 1 50 LEU 50 638 638 LEU LEU A . n A 1 51 GLN 51 639 639 GLN GLN A . n A 1 52 LYS 52 640 640 LYS LYS A . n A 1 53 GLY 53 641 641 GLY GLY A . n A 1 54 ASP 54 642 642 ASP ASP A . n A 1 55 ILE 55 643 643 ILE ILE A . n A 1 56 ILE 56 644 644 ILE ILE A . n A 1 57 LYS 57 645 645 LYS LYS A . n A 1 58 GLU 58 646 646 GLU GLU A . n A 1 59 ILE 59 647 647 ILE ILE A . n A 1 60 TYR 60 648 648 TYR TYR A . n A 1 61 HIS 61 649 649 HIS HIS A . n A 1 62 GLN 62 650 650 GLN GLN A . n A 1 63 ASN 63 651 651 ASN ASN A . n A 1 64 VAL 64 652 652 VAL VAL A . n A 1 65 GLN 65 653 653 GLN GLN A . n A 1 66 ASN 66 654 654 ASN ASN A . n A 1 67 LEU 67 655 655 LEU LEU A . n A 1 68 THR 68 656 656 THR THR A . n A 1 69 HIS 69 657 657 HIS HIS A . n A 1 70 LEU 70 658 658 LEU LEU A . n A 1 71 GLN 71 659 659 GLN GLN A . n A 1 72 VAL 72 660 660 VAL VAL A . n A 1 73 VAL 73 661 661 VAL VAL A . n A 1 74 GLU 74 662 662 GLU GLU A . n A 1 75 VAL 75 663 663 VAL VAL A . n A 1 76 LEU 76 664 664 LEU LEU A . n A 1 77 LYS 77 665 665 LYS LYS A . n A 1 78 GLN 78 666 666 GLN GLN A . n A 1 79 PHE 79 667 667 PHE PHE A . n A 1 80 PRO 80 668 668 PRO PRO A . n A 1 81 VAL 81 669 669 VAL VAL A . n A 1 82 GLY 82 670 670 GLY GLY A . n A 1 83 ALA 83 671 671 ALA ALA A . n A 1 84 ASP 84 672 672 ASP ASP A . n A 1 85 VAL 85 673 673 VAL VAL A . n A 1 86 PRO 86 674 674 PRO PRO A . n A 1 87 LEU 87 675 675 LEU LEU A . n A 1 88 LEU 88 676 676 LEU LEU A . n A 1 89 ILE 89 677 677 ILE ILE A . n A 1 90 LEU 90 678 678 LEU LEU A . n A 1 91 ARG 91 679 679 ARG ARG A . n A 1 92 GLY 92 680 680 GLY GLY A . n A 1 93 GLY 93 681 681 GLY GLY A . n A 1 94 PRO 94 682 682 PRO PRO A . n A 1 95 PRO 95 683 683 PRO PRO A . n A 1 96 SER 96 684 ? ? ? A . n A 1 97 PRO 97 685 ? ? ? A . n A 1 98 THR 98 686 ? ? ? A . n A 1 99 LYS 99 687 ? ? ? A . n A 1 100 THR 100 688 ? ? ? A . n A 1 101 ALA 101 689 ? ? ? A . n A 1 102 LYS 102 690 ? ? ? A . n A 1 103 MET 103 691 ? ? ? A . n A 1 104 GLY 104 692 ? ? ? A . n A 1 105 SER 105 693 ? ? ? A . n A 1 106 GLY 106 694 ? ? ? A . n A 1 107 SER 107 695 ? ? ? A . n A 1 108 GLY 108 696 696 GLY GLY A . n A 1 109 GLN 109 697 697 GLN GLN A . n A 1 110 ILE 110 698 698 ILE ILE A . n A 1 111 THR 111 699 699 THR THR A . n A 1 112 LYS 112 700 700 LYS LYS A . n A 1 113 VAL 113 701 701 VAL VAL A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 1 1 EDO EDO A . C 3 HOH 1 3 3 HOH HOH A . C 3 HOH 2 4 4 HOH HOH A . C 3 HOH 3 6 6 HOH HOH A . C 3 HOH 4 7 7 HOH HOH A . C 3 HOH 5 8 8 HOH HOH A . C 3 HOH 6 14 14 HOH HOH A . C 3 HOH 7 15 15 HOH HOH A . C 3 HOH 8 16 16 HOH HOH A . C 3 HOH 9 18 18 HOH HOH A . C 3 HOH 10 20 20 HOH HOH A . C 3 HOH 11 22 22 HOH HOH A . C 3 HOH 12 23 23 HOH HOH A . C 3 HOH 13 26 26 HOH HOH A . C 3 HOH 14 27 27 HOH HOH A . C 3 HOH 15 29 29 HOH HOH A . C 3 HOH 16 36 36 HOH HOH A . C 3 HOH 17 39 39 HOH HOH A . C 3 HOH 18 40 40 HOH HOH A . C 3 HOH 19 42 42 HOH HOH A . C 3 HOH 20 45 45 HOH HOH A . C 3 HOH 21 47 47 HOH HOH A . C 3 HOH 22 50 50 HOH HOH A . C 3 HOH 23 53 53 HOH HOH A . C 3 HOH 24 54 54 HOH HOH A . C 3 HOH 25 58 58 HOH HOH A . C 3 HOH 26 60 60 HOH HOH A . C 3 HOH 27 62 62 HOH HOH A . C 3 HOH 28 64 64 HOH HOH A . C 3 HOH 29 66 66 HOH HOH A . C 3 HOH 30 67 67 HOH HOH A . C 3 HOH 31 68 68 HOH HOH A . C 3 HOH 32 69 69 HOH HOH A . C 3 HOH 33 70 70 HOH HOH A . C 3 HOH 34 71 71 HOH HOH A . C 3 HOH 35 72 72 HOH HOH A . C 3 HOH 36 73 73 HOH HOH A . C 3 HOH 37 74 74 HOH HOH A . C 3 HOH 38 75 75 HOH HOH A . C 3 HOH 39 76 76 HOH HOH A . C 3 HOH 40 77 77 HOH HOH A . C 3 HOH 41 78 78 HOH HOH A . C 3 HOH 42 79 79 HOH HOH A . C 3 HOH 43 80 80 HOH HOH A . C 3 HOH 44 81 81 HOH HOH A . C 3 HOH 45 82 82 HOH HOH A . C 3 HOH 46 83 83 HOH HOH A . C 3 HOH 47 84 84 HOH HOH A . C 3 HOH 48 85 85 HOH HOH A . C 3 HOH 49 86 86 HOH HOH A . C 3 HOH 50 87 87 HOH HOH A . C 3 HOH 51 88 88 HOH HOH A . C 3 HOH 52 89 89 HOH HOH A . C 3 HOH 53 91 91 HOH HOH A . C 3 HOH 54 92 92 HOH HOH A . C 3 HOH 55 93 93 HOH HOH A . C 3 HOH 56 94 94 HOH HOH A . C 3 HOH 57 95 95 HOH HOH A . C 3 HOH 58 96 96 HOH HOH A . C 3 HOH 59 97 97 HOH HOH A . C 3 HOH 60 98 98 HOH HOH A . C 3 HOH 61 99 99 HOH HOH A . C 3 HOH 62 100 100 HOH HOH A . C 3 HOH 63 101 101 HOH HOH A . C 3 HOH 64 102 102 HOH HOH A . C 3 HOH 65 103 103 HOH HOH A . C 3 HOH 66 104 104 HOH HOH A . C 3 HOH 67 105 105 HOH HOH A . C 3 HOH 68 106 106 HOH HOH A . C 3 HOH 69 107 107 HOH HOH A . C 3 HOH 70 108 108 HOH HOH A . C 3 HOH 71 109 109 HOH HOH A . C 3 HOH 72 110 110 HOH HOH A . C 3 HOH 73 111 111 HOH HOH A . C 3 HOH 74 112 112 HOH HOH A . C 3 HOH 75 113 113 HOH HOH A . C 3 HOH 76 114 114 HOH HOH A . C 3 HOH 77 115 115 HOH HOH A . C 3 HOH 78 116 116 HOH HOH A . C 3 HOH 79 117 117 HOH HOH A . C 3 HOH 80 118 118 HOH HOH A . C 3 HOH 81 119 119 HOH HOH A . C 3 HOH 82 120 120 HOH HOH A . C 3 HOH 83 121 121 HOH HOH A . C 3 HOH 84 122 122 HOH HOH A . C 3 HOH 85 123 123 HOH HOH A . C 3 HOH 86 125 125 HOH HOH A . C 3 HOH 87 126 126 HOH HOH A . C 3 HOH 88 127 127 HOH HOH A . C 3 HOH 89 128 128 HOH HOH A . C 3 HOH 90 129 129 HOH HOH A . C 3 HOH 91 130 130 HOH HOH A . C 3 HOH 92 131 131 HOH HOH A . C 3 HOH 93 132 132 HOH HOH A . C 3 HOH 94 133 133 HOH HOH A . C 3 HOH 95 134 134 HOH HOH A . C 3 HOH 96 135 135 HOH HOH A . C 3 HOH 97 137 137 HOH HOH A . C 3 HOH 98 138 138 HOH HOH A . C 3 HOH 99 139 139 HOH HOH A . C 3 HOH 100 140 140 HOH HOH A . C 3 HOH 101 141 141 HOH HOH A . C 3 HOH 102 142 142 HOH HOH A . C 3 HOH 103 143 143 HOH HOH A . C 3 HOH 104 144 144 HOH HOH A . C 3 HOH 105 145 145 HOH HOH A . C 3 HOH 106 146 146 HOH HOH A . C 3 HOH 107 147 147 HOH HOH A . C 3 HOH 108 148 148 HOH HOH A . C 3 HOH 109 149 149 HOH HOH A . C 3 HOH 110 150 150 HOH HOH A . C 3 HOH 111 151 151 HOH HOH A . C 3 HOH 112 152 152 HOH HOH A . C 3 HOH 113 153 153 HOH HOH A . C 3 HOH 114 154 154 HOH HOH A . C 3 HOH 115 155 155 HOH HOH A . C 3 HOH 116 156 156 HOH HOH A . C 3 HOH 117 157 157 HOH HOH A . C 3 HOH 118 158 158 HOH HOH A . C 3 HOH 119 159 159 HOH HOH A . C 3 HOH 120 160 160 HOH HOH A . C 3 HOH 121 161 161 HOH HOH A . C 3 HOH 122 162 162 HOH HOH A . C 3 HOH 123 163 163 HOH HOH A . C 3 HOH 124 164 164 HOH HOH A . C 3 HOH 125 165 165 HOH HOH A . C 3 HOH 126 166 166 HOH HOH A . C 3 HOH 127 167 167 HOH HOH A . C 3 HOH 128 168 168 HOH HOH A . C 3 HOH 129 169 169 HOH HOH A . C 3 HOH 130 170 170 HOH HOH A . C 3 HOH 131 172 172 HOH HOH A . C 3 HOH 132 173 173 HOH HOH A . C 3 HOH 133 174 174 HOH HOH A . C 3 HOH 134 175 175 HOH HOH A . C 3 HOH 135 176 176 HOH HOH A . C 3 HOH 136 177 177 HOH HOH A . C 3 HOH 137 178 178 HOH HOH A . C 3 HOH 138 179 179 HOH HOH A . C 3 HOH 139 180 180 HOH HOH A . C 3 HOH 140 181 181 HOH HOH A . C 3 HOH 141 182 182 HOH HOH A . C 3 HOH 142 183 183 HOH HOH A . C 3 HOH 143 184 184 HOH HOH A . C 3 HOH 144 185 185 HOH HOH A . C 3 HOH 145 186 186 HOH HOH A . C 3 HOH 146 187 187 HOH HOH A . C 3 HOH 147 188 188 HOH HOH A . C 3 HOH 148 189 189 HOH HOH A . C 3 HOH 149 190 190 HOH HOH A . C 3 HOH 150 191 191 HOH HOH A . C 3 HOH 151 192 192 HOH HOH A . C 3 HOH 152 193 193 HOH HOH A . C 3 HOH 153 194 194 HOH HOH A . C 3 HOH 154 195 195 HOH HOH A . C 3 HOH 155 196 196 HOH HOH A . C 3 HOH 156 197 197 HOH HOH A . C 3 HOH 157 198 198 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-27 2 'Structure model' 1 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.595 _diffrn_reflns.pdbx_d_res_low 21.290 _diffrn_reflns.pdbx_number_obs 18132 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.046 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 7.40 _diffrn_reflns.pdbx_redundancy 4.70 _diffrn_reflns.pdbx_percent_possible_obs 97.90 _diffrn_reflns.number 84916 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.04 21.29 ? ? 0.035 0.035 ? 4.40 98.10 1 3.57 5.04 ? ? 0.031 0.031 ? 4.80 100.00 1 2.91 3.57 ? ? 0.035 0.035 ? 4.90 100.00 1 2.52 2.91 ? ? 0.038 0.038 ? 4.90 99.70 1 2.26 2.52 ? ? 0.051 0.051 ? 4.90 99.10 1 2.06 2.26 ? ? 0.069 0.069 ? 4.90 99.00 1 1.91 2.06 ? ? 0.104 0.104 ? 4.80 97.80 1 1.78 1.91 ? ? 0.178 0.178 ? 4.80 97.30 1 1.68 1.78 ? ? 0.305 0.305 ? 4.70 96.80 1 1.60 1.68 ? ? 0.515 0.515 ? 3.80 95.00 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 10.4119 5.9468 15.1616 0.0655 0.1012 0.0317 0.0201 0.0139 -0.0176 0.0522 0.5589 2.4034 -0.0289 0.2878 0.4793 0.0271 -0.0546 0.0275 0.0060 0.0244 -0.0931 -0.0723 0.0324 0.0311 'X-RAY DIFFRACTION' 2 ? refined 3.9090 4.7323 28.5638 0.0455 0.0730 0.0284 -0.0016 -0.0108 -0.0146 0.9016 0.9678 0.4252 0.0909 0.0214 0.1418 0.0279 -0.0595 0.0316 0.0319 -0.0242 0.0250 0.0146 0.0514 -0.0082 'X-RAY DIFFRACTION' 3 ? refined -0.3119 3.7205 20.1473 0.1015 0.0675 0.0589 -0.0060 -0.0143 -0.0557 1.3867 0.2688 3.0986 -0.4923 -1.1299 0.8391 -0.0837 -0.0646 0.1484 0.1188 -0.1855 0.0810 0.0325 0.1555 -0.0931 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 589 A 608 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 609 A 676 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 677 A 701 ? . . . . ? # _pdbx_phasing_MR.entry_id 3SOE _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 58.520 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 21.290 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 21.290 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CrystalClear . ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 105 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 189 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id CYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 635 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -143.53 _pdbx_validate_torsion.psi 52.79 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 665 ? CE ? A LYS 77 CE 2 1 Y 1 A LYS 665 ? NZ ? A LYS 77 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 684 ? A SER 96 2 1 Y 1 A PRO 685 ? A PRO 97 3 1 Y 1 A THR 686 ? A THR 98 4 1 Y 1 A LYS 687 ? A LYS 99 5 1 Y 1 A THR 688 ? A THR 100 6 1 Y 1 A ALA 689 ? A ALA 101 7 1 Y 1 A LYS 690 ? A LYS 102 8 1 Y 1 A MET 691 ? A MET 103 9 1 Y 1 A GLY 692 ? A GLY 104 10 1 Y 1 A SER 693 ? A SER 105 11 1 Y 1 A GLY 694 ? A GLY 106 12 1 Y 1 A SER 695 ? A SER 107 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TRP N N N N 331 TRP CA C N S 332 TRP C C N N 333 TRP O O N N 334 TRP CB C N N 335 TRP CG C Y N 336 TRP CD1 C Y N 337 TRP CD2 C Y N 338 TRP NE1 N Y N 339 TRP CE2 C Y N 340 TRP CE3 C Y N 341 TRP CZ2 C Y N 342 TRP CZ3 C Y N 343 TRP CH2 C Y N 344 TRP OXT O N N 345 TRP H H N N 346 TRP H2 H N N 347 TRP HA H N N 348 TRP HB2 H N N 349 TRP HB3 H N N 350 TRP HD1 H N N 351 TRP HE1 H N N 352 TRP HE3 H N N 353 TRP HZ2 H N N 354 TRP HZ3 H N N 355 TRP HH2 H N N 356 TRP HXT H N N 357 TYR N N N N 358 TYR CA C N S 359 TYR C C N N 360 TYR O O N N 361 TYR CB C N N 362 TYR CG C Y N 363 TYR CD1 C Y N 364 TYR CD2 C Y N 365 TYR CE1 C Y N 366 TYR CE2 C Y N 367 TYR CZ C Y N 368 TYR OH O N N 369 TYR OXT O N N 370 TYR H H N N 371 TYR H2 H N N 372 TYR HA H N N 373 TYR HB2 H N N 374 TYR HB3 H N N 375 TYR HD1 H N N 376 TYR HD2 H N N 377 TYR HE1 H N N 378 TYR HE2 H N N 379 TYR HH H N N 380 TYR HXT H N N 381 VAL N N N N 382 VAL CA C N S 383 VAL C C N N 384 VAL O O N N 385 VAL CB C N N 386 VAL CG1 C N N 387 VAL CG2 C N N 388 VAL OXT O N N 389 VAL H H N N 390 VAL H2 H N N 391 VAL HA H N N 392 VAL HB H N N 393 VAL HG11 H N N 394 VAL HG12 H N N 395 VAL HG13 H N N 396 VAL HG21 H N N 397 VAL HG22 H N N 398 VAL HG23 H N N 399 VAL HXT H N N 400 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 THR N CA sing N N 299 THR N H sing N N 300 THR N H2 sing N N 301 THR CA C sing N N 302 THR CA CB sing N N 303 THR CA HA sing N N 304 THR C O doub N N 305 THR C OXT sing N N 306 THR CB OG1 sing N N 307 THR CB CG2 sing N N 308 THR CB HB sing N N 309 THR OG1 HG1 sing N N 310 THR CG2 HG21 sing N N 311 THR CG2 HG22 sing N N 312 THR CG2 HG23 sing N N 313 THR OXT HXT sing N N 314 TRP N CA sing N N 315 TRP N H sing N N 316 TRP N H2 sing N N 317 TRP CA C sing N N 318 TRP CA CB sing N N 319 TRP CA HA sing N N 320 TRP C O doub N N 321 TRP C OXT sing N N 322 TRP CB CG sing N N 323 TRP CB HB2 sing N N 324 TRP CB HB3 sing N N 325 TRP CG CD1 doub Y N 326 TRP CG CD2 sing Y N 327 TRP CD1 NE1 sing Y N 328 TRP CD1 HD1 sing N N 329 TRP CD2 CE2 doub Y N 330 TRP CD2 CE3 sing Y N 331 TRP NE1 CE2 sing Y N 332 TRP NE1 HE1 sing N N 333 TRP CE2 CZ2 sing Y N 334 TRP CE3 CZ3 doub Y N 335 TRP CE3 HE3 sing N N 336 TRP CZ2 CH2 doub Y N 337 TRP CZ2 HZ2 sing N N 338 TRP CZ3 CH2 sing Y N 339 TRP CZ3 HZ3 sing N N 340 TRP CH2 HH2 sing N N 341 TRP OXT HXT sing N N 342 TYR N CA sing N N 343 TYR N H sing N N 344 TYR N H2 sing N N 345 TYR CA C sing N N 346 TYR CA CB sing N N 347 TYR CA HA sing N N 348 TYR C O doub N N 349 TYR C OXT sing N N 350 TYR CB CG sing N N 351 TYR CB HB2 sing N N 352 TYR CB HB3 sing N N 353 TYR CG CD1 doub Y N 354 TYR CG CD2 sing Y N 355 TYR CD1 CE1 sing Y N 356 TYR CD1 HD1 sing N N 357 TYR CD2 CE2 doub Y N 358 TYR CD2 HD2 sing N N 359 TYR CE1 CZ doub Y N 360 TYR CE1 HE1 sing N N 361 TYR CE2 CZ sing Y N 362 TYR CE2 HE2 sing N N 363 TYR CZ OH sing N N 364 TYR OH HH sing N N 365 TYR OXT HXT sing N N 366 VAL N CA sing N N 367 VAL N H sing N N 368 VAL N H2 sing N N 369 VAL CA C sing N N 370 VAL CA CB sing N N 371 VAL CA HA sing N N 372 VAL C O doub N N 373 VAL C OXT sing N N 374 VAL CB CG1 sing N N 375 VAL CB CG2 sing N N 376 VAL CB HB sing N N 377 VAL CG1 HG11 sing N N 378 VAL CG1 HG12 sing N N 379 VAL CG1 HG13 sing N N 380 VAL CG2 HG21 sing N N 381 VAL CG2 HG22 sing N N 382 VAL CG2 HG23 sing N N 383 VAL OXT HXT sing N N 384 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 3BPU 'Ensemble of 3BPU, 2R4H, 2Q9V' 2 ? 'experimental model' PDB 2R4H 'Ensemble of 3BPU, 2R4H, 2Q9V' 3 ? 'experimental model' PDB 2Q9V 'Ensemble of 3BPU, 2R4H, 2Q9V' #