HEADER HYDROLASE 30-JUN-11 3SON TITLE CRYSTAL STRUCTURE OF A PUTATIVEL NUDIX HYDROLASE (LMOF2365_2679) FROM TITLE 2 LISTERIA MONOCYTOGENES STR. 4B F2365 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL NUDIX HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MUTT/NUDIX FAMILY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 176281; SOURCE 4 STRAIN: LI 2; SOURCE 5 ATCC: 19115; SOURCE 6 GENE: LMOF2365_2679; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NUDIX, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 2 JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3SON 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 3SON 1 JRNL REVDAT 3 25-OCT-17 3SON 1 REMARK REVDAT 2 24-DEC-14 3SON 1 TITLE REVDAT 1 17-AUG-11 3SON 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL NUDIX HYDROLASE JRNL TITL 2 (LMOF2365_2679) FROM LISTERIA MONOCYTOGENES (ATCC 19115) AT JRNL TITL 3 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM + TWIN LAW REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2341 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.38000 REMARK 3 B22 (A**2) : 14.38000 REMARK 3 B33 (A**2) : -28.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.020 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.509 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2446 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1580 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3333 ; 1.565 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3863 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.196 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;31.297 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;11.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.448 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2766 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 510 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 26 5 REMARK 3 1 B 0 B 26 5 REMARK 3 2 A 26 A 33 6 REMARK 3 2 B 26 B 33 6 REMARK 3 3 A 34 A 54 5 REMARK 3 3 B 34 B 54 5 REMARK 3 4 A 51 A 55 6 REMARK 3 4 B 51 B 55 6 REMARK 3 5 A 56 A 97 5 REMARK 3 5 B 56 B 97 5 REMARK 3 6 A 115 A 123 5 REMARK 3 6 B 115 B 123 5 REMARK 3 7 A 132 A 143 5 REMARK 3 7 B 132 B 143 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 612 ; 0.220 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 930 ; 0.490 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 612 ; 4.790 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 930 ; 3.920 ;10.000 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.738 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9750 7.7920 61.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: 0.0549 REMARK 3 T33: 0.1526 T12: 0.0038 REMARK 3 T13: -0.0019 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 0.9808 L22: 0.9541 REMARK 3 L33: 1.1460 L12: -0.0012 REMARK 3 L13: -0.4230 L23: -0.3337 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.1309 S13: 0.0282 REMARK 3 S21: -0.0032 S22: 0.0728 S23: 0.1048 REMARK 3 S31: -0.0607 S32: -0.1024 S33: -0.0758 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9720 8.0920 89.6070 REMARK 3 T TENSOR REMARK 3 T11: 0.0364 T22: 0.0168 REMARK 3 T33: 0.1518 T12: -0.0155 REMARK 3 T13: 0.0439 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.6592 L22: 1.2063 REMARK 3 L33: 1.3999 L12: 0.1856 REMARK 3 L13: -0.0045 L23: -0.1634 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: -0.0221 S13: 0.0446 REMARK 3 S21: 0.0665 S22: -0.0417 S23: 0.1051 REMARK 3 S31: -0.1501 S32: 0.1413 S33: -0.0524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. REMARK 3 ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE REMARK 3 SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4. SOLVENT MOLECULES WERE EXCLUDED FROM THE AUTOMATIC ASSIGNMENT REMARK 3 OF THE TLS GROUPS. 5. THE DIFFRACTION DATA SHOW MEROHEDERAL REMARK 3 TWINNING WITH TWIN LAW "-H, K, -L". THE REFINED TWIN FRACTION REMARK 3 WAS 0.26. THE R-FREE TEST SET REFLECTIONS WERE CHOSEN AT RANDOM REMARK 3 WITH THE TWIN LAW INCLUDED. 6. BOTH SODIUM AND CALCIUM ARE PRESENT REMARK 3 IN THE CRYSTALLIZATION SOLUTION / PROTEIN BUFFER. CALCIUM WAS REMARK 3 MODELED BASED ON A SLIGHTLY BETTER FIT TO THE DENSITY BUT REMARK 3 THE SITE COULD BE MIXED NA AND CA. 7. THE RAMACHANDRAN OUTLIER REMARK 3 A60 IS IN A LOOP WITH WEAK ELECTRON DENSITY. REMARK 4 REMARK 4 3SON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97937,0.97908 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JUNE 12, 2007 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.671 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: REMARK 200 THE CRYSTAL WAS LARGER THAN THE BEAM. AFTER COLLECTING THE 3- REMARK 200 WAVELENGTH REMARK 200 MAD DATA SET, THE CRYSTAL WAS TRANSLATED TO PLACE A FRESH PART OF REMARK 200 THE CRYSTAL REMARK 200 IN THE BEAM BEFORE COLLECTING THE DATA USED IN REFINEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0% 2-PROPANOL, 0.2M CA(OAC)2, 0.1M REMARK 280 MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.24500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.86750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.62250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 N CB CG CD NE CZ NH1 REMARK 470 ARG A 2 NH2 REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 83 NZ REMARK 470 GLN B 3 N CB CG CD OE1 NE2 REMARK 470 LYS B 14 CD CE NZ REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 GLU B 42 CD OE1 OE2 REMARK 470 ASP B 60 CG OD1 OD2 REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 LYS B 83 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 -120.38 53.83 REMARK 500 ASP A 60 -166.87 -56.68 REMARK 500 LYS A 83 155.11 -46.18 REMARK 500 CYS A 99 13.79 -140.91 REMARK 500 ASP B 41 -127.93 49.53 REMARK 500 LYS B 83 155.36 -45.77 REMARK 500 HIS B 109 131.40 -172.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 36 O REMARK 620 2 GLU A 52 OE1 89.8 REMARK 620 3 GLU A 56 OE2 70.4 99.8 REMARK 620 4 HOH A 356 O 156.1 72.2 127.0 REMARK 620 5 HOH A 415 O 75.1 122.7 124.2 101.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 36 O REMARK 620 2 GLU B 52 OE1 82.0 REMARK 620 3 GLU B 56 OE2 71.7 85.7 REMARK 620 4 GLU B 108 OE1 118.8 158.2 94.5 REMARK 620 5 HOH B 403 O 97.4 83.1 165.4 99.4 REMARK 620 6 HOH B 441 O 65.4 143.3 69.0 54.3 116.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 376521 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE STRAIN REMARK 999 CLONED (ATCC 19115 / 4B / LI 2) DIFFERS FROM THE STRAIN SEQUENCED REMARK 999 IN THE DATABASE REFERENCE (SEROTYPE 4B STRAIN F2365). DNA REMARK 999 SEQUENCING OF THE CLONED CONSTRUCT SHOWS AN ISOLUCINE AT POSITION REMARK 999 121 INSTEAD OF A VALINE. THE ISOLUCINE AT POSITION 121 IS SUPPORTED REMARK 999 BY THE ELECTRON DENSITY. DBREF 3SON A 1 148 UNP Q71W72 Q71W72_LISMF 1 148 DBREF 3SON B 1 148 UNP Q71W72 Q71W72_LISMF 1 148 SEQADV 3SON GLY A 0 UNP Q71W72 EXPRESSION TAG SEQADV 3SON ILE A 121 UNP Q71W72 VAL 121 SEE REMARK 999 SEQADV 3SON GLY B 0 UNP Q71W72 EXPRESSION TAG SEQADV 3SON ILE B 121 UNP Q71W72 VAL 121 SEE REMARK 999 SEQRES 1 A 149 GLY MSE ARG GLN PRO PHE GLN VAL LEU VAL ILE PRO PHE SEQRES 2 A 149 ILE LYS THR GLU ALA ASN TYR GLN PHE GLY VAL LEU HIS SEQRES 3 A 149 ARG THR ASP ALA ASP VAL TRP GLN PHE VAL ALA GLY GLY SEQRES 4 A 149 GLY GLU ASP GLU GLU ALA ILE SER GLU THR ALA LYS ARG SEQRES 5 A 149 GLU SER ILE GLU GLU LEU ASN LEU ASP VAL ASP VAL LYS SEQRES 6 A 149 MSE TYR SER LEU ASP SER HIS ALA SER ILE PRO ASN PHE SEQRES 7 A 149 HIS PHE SER PHE ASN LYS PRO TYR VAL VAL PRO GLU TYR SEQRES 8 A 149 CYS PHE ALA ILE ASP LEU THR SER CYS SER TYR GLN VAL SEQRES 9 A 149 THR LEU SER LEU GLU HIS SER GLU LEU ARG TRP VAL SER SEQRES 10 A 149 TYR GLU SER ALA ILE GLN LEU LEU GLU TRP ASP SER ASN SEQRES 11 A 149 LYS THR ALA LEU TYR GLU LEU ASN GLU ARG LEU LYS ASN SEQRES 12 A 149 ASN ASP MSE LYS ALA MSE SEQRES 1 B 149 GLY MSE ARG GLN PRO PHE GLN VAL LEU VAL ILE PRO PHE SEQRES 2 B 149 ILE LYS THR GLU ALA ASN TYR GLN PHE GLY VAL LEU HIS SEQRES 3 B 149 ARG THR ASP ALA ASP VAL TRP GLN PHE VAL ALA GLY GLY SEQRES 4 B 149 GLY GLU ASP GLU GLU ALA ILE SER GLU THR ALA LYS ARG SEQRES 5 B 149 GLU SER ILE GLU GLU LEU ASN LEU ASP VAL ASP VAL LYS SEQRES 6 B 149 MSE TYR SER LEU ASP SER HIS ALA SER ILE PRO ASN PHE SEQRES 7 B 149 HIS PHE SER PHE ASN LYS PRO TYR VAL VAL PRO GLU TYR SEQRES 8 B 149 CYS PHE ALA ILE ASP LEU THR SER CYS SER TYR GLN VAL SEQRES 9 B 149 THR LEU SER LEU GLU HIS SER GLU LEU ARG TRP VAL SER SEQRES 10 B 149 TYR GLU SER ALA ILE GLN LEU LEU GLU TRP ASP SER ASN SEQRES 11 B 149 LYS THR ALA LEU TYR GLU LEU ASN GLU ARG LEU LYS ASN SEQRES 12 B 149 ASN ASP MSE LYS ALA MSE MODRES 3SON MSE A 65 MET SELENOMETHIONINE MODRES 3SON MSE A 145 MET SELENOMETHIONINE MODRES 3SON MSE A 148 MET SELENOMETHIONINE MODRES 3SON MSE B 65 MET SELENOMETHIONINE MODRES 3SON MSE B 145 MET SELENOMETHIONINE MODRES 3SON MSE B 148 MET SELENOMETHIONINE HET MSE A 65 16 HET MSE A 145 8 HET MSE A 148 18 HET MSE B 65 8 HET MSE B 145 8 HET MSE B 148 9 HET CA A 201 1 HET CA B 201 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *169(H2 O) HELIX 1 1 ALA A 44 ASN A 58 1 15 HELIX 2 2 PHE A 77 PHE A 79 5 3 HELIX 3 3 CYS A 99 VAL A 103 5 5 HELIX 4 4 SER A 116 LEU A 124 1 9 HELIX 5 5 TRP A 126 ASN A 142 1 17 HELIX 6 6 ALA B 44 ASN B 58 1 15 HELIX 7 7 PHE B 77 PHE B 79 5 3 HELIX 8 8 SER B 116 LEU B 124 1 9 HELIX 9 9 TRP B 126 ASN B 142 1 17 SHEET 1 A 5 TRP A 32 GLN A 33 0 SHEET 2 A 5 TYR A 19 ARG A 26 -1 N LEU A 24 O GLN A 33 SHEET 3 A 5 GLN A 6 LYS A 14 -1 N ILE A 13 O GLN A 20 SHEET 4 A 5 VAL A 86 ASP A 95 1 O PHE A 92 N ILE A 10 SHEET 5 A 5 MSE A 65 PRO A 75 -1 N ALA A 72 O GLU A 89 SHEET 1 B 4 VAL A 35 GLY A 38 0 SHEET 2 B 4 GLN A 6 LYS A 14 -1 N VAL A 7 O GLY A 37 SHEET 3 B 4 TYR A 19 ARG A 26 -1 O GLN A 20 N ILE A 13 SHEET 4 B 4 HIS A 109 VAL A 115 -1 O VAL A 115 N PHE A 21 SHEET 1 C 5 TRP B 32 GLN B 33 0 SHEET 2 C 5 TYR B 19 HIS B 25 -1 N LEU B 24 O GLN B 33 SHEET 3 C 5 GLN B 6 LYS B 14 -1 N PRO B 11 O GLY B 22 SHEET 4 C 5 VAL B 86 ASP B 95 1 O PRO B 88 N GLN B 6 SHEET 5 C 5 LYS B 64 PRO B 75 -1 N TYR B 66 O ALA B 93 SHEET 1 D 4 VAL B 35 GLY B 38 0 SHEET 2 D 4 GLN B 6 LYS B 14 -1 N VAL B 9 O VAL B 35 SHEET 3 D 4 TYR B 19 HIS B 25 -1 O GLY B 22 N PRO B 11 SHEET 4 D 4 GLU B 111 VAL B 115 -1 O VAL B 115 N PHE B 21 LINK C LYS A 64 N AMSE A 65 1555 1555 1.33 LINK C LYS A 64 N BMSE A 65 1555 1555 1.35 LINK C AMSE A 65 N TYR A 66 1555 1555 1.33 LINK C BMSE A 65 N TYR A 66 1555 1555 1.32 LINK C ASP A 144 N MSE A 145 1555 1555 1.32 LINK C MSE A 145 N LYS A 146 1555 1555 1.34 LINK C AALA A 147 N AMSE A 148 1555 1555 1.35 LINK C BALA A 147 N BMSE A 148 1555 1555 1.32 LINK C LYS B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N TYR B 66 1555 1555 1.32 LINK C ASP B 144 N MSE B 145 1555 1555 1.31 LINK C MSE B 145 N LYS B 146 1555 1555 1.32 LINK C ALA B 147 N MSE B 148 1555 1555 1.33 LINK O ALA A 36 CA CA A 201 1555 1555 2.32 LINK OE1 GLU A 52 CA CA A 201 1555 1555 2.34 LINK OE2 GLU A 56 CA CA A 201 1555 1555 2.66 LINK CA CA A 201 O HOH A 356 1555 1555 2.15 LINK CA CA A 201 O HOH A 415 1555 1555 2.67 LINK O ALA B 36 CA CA B 201 1555 1555 2.35 LINK OE1 GLU B 52 CA CA B 201 1555 1555 2.66 LINK OE2 GLU B 56 CA CA B 201 1555 1555 2.56 LINK OE1 GLU B 108 CA CA B 201 1555 1555 2.96 LINK CA CA B 201 O HOH B 403 1555 1555 2.70 LINK CA CA B 201 O HOH B 441 1555 1555 3.07 CISPEP 1 LYS A 83 PRO A 84 0 3.75 CISPEP 2 LYS B 83 PRO B 84 0 4.11 SITE 1 AC1 5 ALA A 36 GLU A 52 GLU A 56 HOH A 356 SITE 2 AC1 5 HOH A 415 SITE 1 AC2 6 ALA B 36 GLU B 52 GLU B 56 GLU B 108 SITE 2 AC2 6 HOH B 403 HOH B 441 CRYST1 57.880 57.880 94.490 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017277 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010583 0.00000