data_3SOS # _entry.id 3SOS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3SOS RCSB RCSB066465 WWPDB D_1000066465 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3SOR _pdbx_database_related.details 'Structurally related ligand in complex to FXIa' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SOS _pdbx_database_status.recvd_initial_deposition_date 2011-06-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fradera, X.' 1 'Kazemier, B.' 2 'Oubrie, A.' 3 # _citation.id primary _citation.title 'High-resolution crystal structures of factor XIa coagulation factor in complex with nonbasic high-affinity synthetic inhibitors.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 68 _citation.page_first 404 _citation.page_last 408 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22505407 _citation.pdbx_database_id_DOI 10.1107/S1744309112009037 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fradera, X.' 1 primary 'Kazemier, B.' 2 primary 'Carswell, E.' 3 primary 'Cooke, A.' 4 primary 'Oubrie, A.' 5 primary 'Hamilton, W.' 6 primary 'Dempster, M.' 7 primary 'Krapp, S.' 8 primary 'Nagel, S.' 9 primary 'Jestel, A.' 10 # _cell.entry_id 3SOS _cell.length_a 59.114 _cell.length_b 59.548 _cell.length_c 66.755 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SOS _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Coagulation factor XI' 26856.496 1 3.4.21.27 C500S ? ? 2 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 4 non-polymer syn ;N-[(2S)-1-({2-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]ethyl}amino)-1-oxo-3-phenylpropan-2-yl]-3-oxo-3,4-dihydro-2H-1,4-benzothiazine-7-carboxamide ; 562.043 1 ? ? ? ? 5 water nat water 18.015 82 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'FXI, Plasma thromboplastin antecedent, PTA, Coagulation factor XIa heavy chain, Coagulation factor XIa light chain' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEII IHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQAV ; _entity_poly.pdbx_seq_one_letter_code_can ;IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEII IHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQAV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 THR n 1 6 ALA n 1 7 SER n 1 8 VAL n 1 9 ARG n 1 10 GLY n 1 11 GLU n 1 12 TRP n 1 13 PRO n 1 14 TRP n 1 15 GLN n 1 16 VAL n 1 17 THR n 1 18 LEU n 1 19 HIS n 1 20 THR n 1 21 THR n 1 22 SER n 1 23 PRO n 1 24 THR n 1 25 GLN n 1 26 ARG n 1 27 HIS n 1 28 LEU n 1 29 CYS n 1 30 GLY n 1 31 GLY n 1 32 SER n 1 33 ILE n 1 34 ILE n 1 35 GLY n 1 36 ASN n 1 37 GLN n 1 38 TRP n 1 39 ILE n 1 40 LEU n 1 41 THR n 1 42 ALA n 1 43 ALA n 1 44 HIS n 1 45 CYS n 1 46 PHE n 1 47 TYR n 1 48 GLY n 1 49 VAL n 1 50 GLU n 1 51 SER n 1 52 PRO n 1 53 LYS n 1 54 ILE n 1 55 LEU n 1 56 ARG n 1 57 VAL n 1 58 TYR n 1 59 SER n 1 60 GLY n 1 61 ILE n 1 62 LEU n 1 63 ASN n 1 64 GLN n 1 65 SER n 1 66 GLU n 1 67 ILE n 1 68 LYS n 1 69 GLU n 1 70 ASP n 1 71 THR n 1 72 SER n 1 73 PHE n 1 74 PHE n 1 75 GLY n 1 76 VAL n 1 77 GLN n 1 78 GLU n 1 79 ILE n 1 80 ILE n 1 81 ILE n 1 82 HIS n 1 83 ASP n 1 84 GLN n 1 85 TYR n 1 86 LYS n 1 87 MET n 1 88 ALA n 1 89 GLU n 1 90 SER n 1 91 GLY n 1 92 TYR n 1 93 ASP n 1 94 ILE n 1 95 ALA n 1 96 LEU n 1 97 LEU n 1 98 LYS n 1 99 LEU n 1 100 GLU n 1 101 THR n 1 102 THR n 1 103 VAL n 1 104 ASN n 1 105 TYR n 1 106 THR n 1 107 ASP n 1 108 SER n 1 109 GLN n 1 110 ARG n 1 111 PRO n 1 112 ILE n 1 113 SER n 1 114 LEU n 1 115 PRO n 1 116 SER n 1 117 LYS n 1 118 GLY n 1 119 ASP n 1 120 ARG n 1 121 ASN n 1 122 VAL n 1 123 ILE n 1 124 TYR n 1 125 THR n 1 126 ASP n 1 127 CYS n 1 128 TRP n 1 129 VAL n 1 130 THR n 1 131 GLY n 1 132 TRP n 1 133 GLY n 1 134 TYR n 1 135 ARG n 1 136 LYS n 1 137 LEU n 1 138 ARG n 1 139 ASP n 1 140 LYS n 1 141 ILE n 1 142 GLN n 1 143 ASN n 1 144 THR n 1 145 LEU n 1 146 GLN n 1 147 LYS n 1 148 ALA n 1 149 LYS n 1 150 ILE n 1 151 PRO n 1 152 LEU n 1 153 VAL n 1 154 THR n 1 155 ASN n 1 156 GLU n 1 157 GLU n 1 158 CYS n 1 159 GLN n 1 160 LYS n 1 161 ARG n 1 162 TYR n 1 163 ARG n 1 164 GLY n 1 165 HIS n 1 166 LYS n 1 167 ILE n 1 168 THR n 1 169 HIS n 1 170 LYS n 1 171 MET n 1 172 ILE n 1 173 CYS n 1 174 ALA n 1 175 GLY n 1 176 TYR n 1 177 ARG n 1 178 GLU n 1 179 GLY n 1 180 GLY n 1 181 LYS n 1 182 ASP n 1 183 ALA n 1 184 CYS n 1 185 LYS n 1 186 GLY n 1 187 ASP n 1 188 SER n 1 189 GLY n 1 190 GLY n 1 191 PRO n 1 192 LEU n 1 193 SER n 1 194 CYS n 1 195 LYS n 1 196 HIS n 1 197 ASN n 1 198 GLU n 1 199 VAL n 1 200 TRP n 1 201 HIS n 1 202 LEU n 1 203 VAL n 1 204 GLY n 1 205 ILE n 1 206 THR n 1 207 SER n 1 208 TRP n 1 209 GLY n 1 210 GLU n 1 211 GLY n 1 212 CYS n 1 213 ALA n 1 214 GLN n 1 215 ARG n 1 216 GLU n 1 217 ARG n 1 218 PRO n 1 219 GLY n 1 220 VAL n 1 221 TYR n 1 222 THR n 1 223 ASN n 1 224 VAL n 1 225 VAL n 1 226 GLU n 1 227 TYR n 1 228 VAL n 1 229 ASP n 1 230 TRP n 1 231 ILE n 1 232 LEU n 1 233 GLU n 1 234 LYS n 1 235 THR n 1 236 GLN n 1 237 ALA n 1 238 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene F11 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Komagataella pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FA11_HUMAN _struct_ref.pdbx_db_accession P03951 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEII IHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQAV ; _struct_ref.pdbx_align_begin 388 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SOS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 238 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03951 _struct_ref_seq.db_align_beg 388 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 625 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 388 _struct_ref_seq.pdbx_auth_seq_align_end 625 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3SOS _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 113 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P03951 _struct_ref_seq_dif.db_mon_id CYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 500 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 500 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 O61 peptide-like . ;N-[(2S)-1-({2-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]ethyl}amino)-1-oxo-3-phenylpropan-2-yl]-3-oxo-3,4-dihydro-2H-1,4-benzothiazine-7-carboxamide ; ? 'C27 H24 Cl N7 O3 S' 562.043 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3SOS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Co-crystallization by adding seeds to the crystal drops using a Hampton seed hair. crystal. solutin: 0.1 M citrate pH 4.5 - 5.25, 22 - 24 % PEG4000. cryoprotectant: 75 % mother liquor + 25 % Glycerol, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3SOS _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.46 _reflns.d_resolution_high 1.73 _reflns.number_obs 7446 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3SOS _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7446 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.46 _refine.ls_d_res_high 2.58 _refine.ls_percent_reflns_obs 99.77 _refine.ls_R_factor_obs 0.20278 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19904 _refine.ls_R_factor_R_free 0.27814 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 362 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.904 _refine.B_iso_mean 29.253 _refine.aniso_B[1][1] 2.09 _refine.aniso_B[2][2] -1.24 _refine.aniso_B[3][3] -0.86 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'proprietary FXIa structure' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.384 _refine.overall_SU_ML 0.264 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 12.052 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1875 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 60 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 2017 _refine_hist.d_res_high 2.58 _refine_hist.d_res_low 44.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.020 ? 2036 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1391 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.414 1.963 ? 2773 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.852 3.005 ? 3375 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.314 5.000 ? 249 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.404 23.804 ? 92 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.896 15.000 ? 346 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.734 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.080 0.200 ? 291 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 2259 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 423 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.186 0.200 ? 909 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.208 0.200 ? 105 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.279 0.200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.253 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.159 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.248 1.500 ? 1530 'X-RAY DIFFRACTION' ? r_mcbond_other 0.200 1.500 ? 495 'X-RAY DIFFRACTION' ? r_mcangle_it 1.538 2.000 ? 1930 'X-RAY DIFFRACTION' ? r_scbond_it 2.286 3.000 ? 1024 'X-RAY DIFFRACTION' ? r_scangle_it 3.341 4.500 ? 836 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.580 _refine_ls_shell.d_res_low 2.647 _refine_ls_shell.number_reflns_R_work 465 _refine_ls_shell.R_factor_R_work 0.309 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.501 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3SOS _struct.title 'Benzothiazinone inhibitor in complex with FXIa' _struct.pdbx_descriptor 'Coagulation factor XI (E.C.3.4.21.27)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SOS _struct_keywords.pdbx_keywords 'Hydrolase/Hydrolase Inhibitor' _struct_keywords.text 'hydrolase, serine protease, coagulation factor, Hydrolase-Hydrolase Inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 42 ? TYR A 47 ? ALA A 429 TYR A 434 5 ? 6 HELX_P HELX_P2 2 SER A 51 ? LYS A 53 ? SER A 438 LYS A 440 5 ? 3 HELX_P HELX_P3 3 ASN A 63 ? ILE A 67 ? ASN A 450 ILE A 454 5 ? 5 HELX_P HELX_P4 4 MET A 87 ? GLY A 91 ? MET A 474 GLY A 478 5 ? 5 HELX_P HELX_P5 5 THR A 154 ? TYR A 162 ? THR A 541 TYR A 549 1 ? 9 HELX_P HELX_P6 6 TYR A 227 ? GLN A 236 ? TYR A 614 GLN A 623 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 45 SG ? ? A CYS 416 A CYS 432 1_555 ? ? ? ? ? ? ? 2.002 ? disulf2 disulf ? ? A CYS 127 SG ? ? ? 1_555 A CYS 194 SG ? ? A CYS 514 A CYS 581 1_555 ? ? ? ? ? ? ? 2.054 ? disulf3 disulf ? ? A CYS 158 SG ? ? ? 1_555 A CYS 173 SG ? ? A CYS 545 A CYS 560 1_555 ? ? ? ? ? ? ? 2.045 ? disulf4 disulf ? ? A CYS 184 SG ? ? ? 1_555 A CYS 212 SG ? ? A CYS 571 A CYS 599 1_555 ? ? ? ? ? ? ? 2.042 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 409 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 410 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.96 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 5 ? ALA A 6 ? THR A 392 ALA A 393 A 2 GLN A 146 ? LYS A 149 ? GLN A 533 LYS A 536 A 3 CYS A 127 ? GLY A 131 ? CYS A 514 GLY A 518 A 4 PRO A 191 ? HIS A 196 ? PRO A 578 HIS A 583 A 5 VAL A 199 ? TRP A 208 ? VAL A 586 TRP A 595 A 6 GLY A 219 ? ASN A 223 ? GLY A 606 ASN A 610 A 7 MET A 171 ? ALA A 174 ? MET A 558 ALA A 561 A 8 LEU A 152 ? VAL A 153 ? LEU A 539 VAL A 540 B 1 GLN A 15 ? THR A 20 ? GLN A 402 THR A 407 B 2 ARG A 26 ? GLY A 35 ? ARG A 413 GLY A 422 B 3 TRP A 38 ? THR A 41 ? TRP A 425 THR A 428 B 4 ALA A 95 ? LEU A 99 ? ALA A 482 LEU A 486 B 5 PHE A 74 ? ILE A 81 ? PHE A 461 ILE A 468 B 6 LEU A 55 ? TYR A 58 ? LEU A 442 TYR A 445 B 7 GLN A 15 ? THR A 20 ? GLN A 402 THR A 407 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 5 ? N THR A 392 O LYS A 147 ? O LYS A 534 A 2 3 O ALA A 148 ? O ALA A 535 N VAL A 129 ? N VAL A 516 A 3 4 N TRP A 128 ? N TRP A 515 O SER A 193 ? O SER A 580 A 4 5 N CYS A 194 ? N CYS A 581 O HIS A 201 ? O HIS A 588 A 5 6 N TRP A 208 ? N TRP A 595 O VAL A 220 ? O VAL A 607 A 6 7 O TYR A 221 ? O TYR A 608 N ILE A 172 ? N ILE A 559 A 7 8 O CYS A 173 ? O CYS A 560 N VAL A 153 ? N VAL A 540 B 1 2 N LEU A 18 ? N LEU A 405 O CYS A 29 ? O CYS A 416 B 2 3 N SER A 32 ? N SER A 419 O LEU A 40 ? O LEU A 427 B 3 4 N THR A 41 ? N THR A 428 O ALA A 95 ? O ALA A 482 B 4 5 O LYS A 98 ? O LYS A 485 N GLN A 77 ? N GLN A 464 B 5 6 O PHE A 74 ? O PHE A 461 N VAL A 57 ? N VAL A 444 B 6 7 O ARG A 56 ? O ARG A 443 N HIS A 19 ? N HIS A 406 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE CIT A 701' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE TRS A 702' AC3 Software ? ? ? ? 22 'BINDING SITE FOR RESIDUE O61 A 703' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLU A 11 ? GLU A 398 . ? 2_454 ? 2 AC1 11 TRP A 12 ? TRP A 399 . ? 2_454 ? 3 AC1 11 GLN A 84 ? GLN A 471 . ? 1_555 ? 4 AC1 11 TYR A 92 ? TYR A 479 . ? 1_555 ? 5 AC1 11 ASP A 126 ? ASP A 513 . ? 2_454 ? 6 AC1 11 TRP A 128 ? TRP A 515 . ? 2_454 ? 7 AC1 11 LYS A 147 ? LYS A 534 . ? 2_454 ? 8 AC1 11 HIS A 169 ? HIS A 556 . ? 1_555 ? 9 AC1 11 LYS A 170 ? LYS A 557 . ? 1_555 ? 10 AC1 11 LYS A 195 ? LYS A 582 . ? 2_454 ? 11 AC1 11 HOH E . ? HOH A 870 . ? 1_555 ? 12 AC2 9 ARG A 9 ? ARG A 396 . ? 1_555 ? 13 AC2 9 GLY A 10 ? GLY A 397 . ? 1_555 ? 14 AC2 9 TRP A 12 ? TRP A 399 . ? 1_555 ? 15 AC2 9 PRO A 13 ? PRO A 400 . ? 1_555 ? 16 AC2 9 GLN A 15 ? GLN A 402 . ? 1_555 ? 17 AC2 9 ILE A 61 ? ILE A 448 . ? 1_555 ? 18 AC2 9 SER A 108 ? SER A 495 . ? 1_555 ? 19 AC2 9 LEU A 145 ? LEU A 532 . ? 1_555 ? 20 AC2 9 HOH E . ? HOH A 806 . ? 1_555 ? 21 AC3 22 ARG A 26 ? ARG A 413 . ? 1_555 ? 22 AC3 22 HIS A 27 ? HIS A 414 . ? 1_555 ? 23 AC3 22 LEU A 28 ? LEU A 415 . ? 1_555 ? 24 AC3 22 HIS A 44 ? HIS A 431 . ? 1_555 ? 25 AC3 22 TYR A 134 ? TYR A 521 . ? 1_555 ? 26 AC3 22 ILE A 141 ? ILE A 528 . ? 1_555 ? 27 AC3 22 ASP A 182 ? ASP A 569 . ? 1_555 ? 28 AC3 22 ALA A 183 ? ALA A 570 . ? 1_555 ? 29 AC3 22 CYS A 184 ? CYS A 571 . ? 1_555 ? 30 AC3 22 LYS A 185 ? LYS A 572 . ? 1_555 ? 31 AC3 22 GLY A 186 ? GLY A 573 . ? 1_555 ? 32 AC3 22 ASP A 187 ? ASP A 574 . ? 1_555 ? 33 AC3 22 SER A 188 ? SER A 575 . ? 1_555 ? 34 AC3 22 THR A 206 ? THR A 593 . ? 1_555 ? 35 AC3 22 SER A 207 ? SER A 594 . ? 1_555 ? 36 AC3 22 TRP A 208 ? TRP A 595 . ? 1_555 ? 37 AC3 22 GLY A 209 ? GLY A 596 . ? 1_555 ? 38 AC3 22 GLY A 211 ? GLY A 598 . ? 1_555 ? 39 AC3 22 CYS A 212 ? CYS A 599 . ? 1_555 ? 40 AC3 22 GLY A 219 ? GLY A 606 . ? 1_555 ? 41 AC3 22 VAL A 220 ? VAL A 607 . ? 1_555 ? 42 AC3 22 TYR A 221 ? TYR A 608 . ? 1_555 ? # _database_PDB_matrix.entry_id 3SOS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3SOS _atom_sites.fract_transf_matrix[1][1] 0.016916 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016793 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014980 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 388 388 ILE ILE A . n A 1 2 VAL 2 389 389 VAL VAL A . n A 1 3 GLY 3 390 390 GLY GLY A . n A 1 4 GLY 4 391 391 GLY GLY A . n A 1 5 THR 5 392 392 THR THR A . n A 1 6 ALA 6 393 393 ALA ALA A . n A 1 7 SER 7 394 394 SER SER A . n A 1 8 VAL 8 395 395 VAL VAL A . n A 1 9 ARG 9 396 396 ARG ARG A . n A 1 10 GLY 10 397 397 GLY GLY A . n A 1 11 GLU 11 398 398 GLU GLU A . n A 1 12 TRP 12 399 399 TRP TRP A . n A 1 13 PRO 13 400 400 PRO PRO A . n A 1 14 TRP 14 401 401 TRP TRP A . n A 1 15 GLN 15 402 402 GLN GLN A . n A 1 16 VAL 16 403 403 VAL VAL A . n A 1 17 THR 17 404 404 THR THR A . n A 1 18 LEU 18 405 405 LEU LEU A . n A 1 19 HIS 19 406 406 HIS HIS A . n A 1 20 THR 20 407 407 THR THR A . n A 1 21 THR 21 408 408 THR THR A . n A 1 22 SER 22 409 409 SER SER A . n A 1 23 PRO 23 410 410 PRO PRO A . n A 1 24 THR 24 411 411 THR THR A . n A 1 25 GLN 25 412 412 GLN GLN A . n A 1 26 ARG 26 413 413 ARG ARG A . n A 1 27 HIS 27 414 414 HIS HIS A . n A 1 28 LEU 28 415 415 LEU LEU A . n A 1 29 CYS 29 416 416 CYS CYS A . n A 1 30 GLY 30 417 417 GLY GLY A . n A 1 31 GLY 31 418 418 GLY GLY A . n A 1 32 SER 32 419 419 SER SER A . n A 1 33 ILE 33 420 420 ILE ILE A . n A 1 34 ILE 34 421 421 ILE ILE A . n A 1 35 GLY 35 422 422 GLY GLY A . n A 1 36 ASN 36 423 423 ASN ASN A . n A 1 37 GLN 37 424 424 GLN GLN A . n A 1 38 TRP 38 425 425 TRP TRP A . n A 1 39 ILE 39 426 426 ILE ILE A . n A 1 40 LEU 40 427 427 LEU LEU A . n A 1 41 THR 41 428 428 THR THR A . n A 1 42 ALA 42 429 429 ALA ALA A . n A 1 43 ALA 43 430 430 ALA ALA A . n A 1 44 HIS 44 431 431 HIS HIS A . n A 1 45 CYS 45 432 432 CYS CYS A . n A 1 46 PHE 46 433 433 PHE PHE A . n A 1 47 TYR 47 434 434 TYR TYR A . n A 1 48 GLY 48 435 435 GLY GLY A . n A 1 49 VAL 49 436 436 VAL VAL A . n A 1 50 GLU 50 437 437 GLU GLU A . n A 1 51 SER 51 438 438 SER SER A . n A 1 52 PRO 52 439 439 PRO PRO A . n A 1 53 LYS 53 440 440 LYS LYS A . n A 1 54 ILE 54 441 441 ILE ILE A . n A 1 55 LEU 55 442 442 LEU LEU A . n A 1 56 ARG 56 443 443 ARG ARG A . n A 1 57 VAL 57 444 444 VAL VAL A . n A 1 58 TYR 58 445 445 TYR TYR A . n A 1 59 SER 59 446 446 SER SER A . n A 1 60 GLY 60 447 447 GLY GLY A . n A 1 61 ILE 61 448 448 ILE ILE A . n A 1 62 LEU 62 449 449 LEU LEU A . n A 1 63 ASN 63 450 450 ASN ASN A . n A 1 64 GLN 64 451 451 GLN GLN A . n A 1 65 SER 65 452 452 SER SER A . n A 1 66 GLU 66 453 453 GLU GLU A . n A 1 67 ILE 67 454 454 ILE ILE A . n A 1 68 LYS 68 455 455 LYS LYS A . n A 1 69 GLU 69 456 456 GLU GLU A . n A 1 70 ASP 70 457 457 ASP ASP A . n A 1 71 THR 71 458 458 THR THR A . n A 1 72 SER 72 459 459 SER SER A . n A 1 73 PHE 73 460 460 PHE PHE A . n A 1 74 PHE 74 461 461 PHE PHE A . n A 1 75 GLY 75 462 462 GLY GLY A . n A 1 76 VAL 76 463 463 VAL VAL A . n A 1 77 GLN 77 464 464 GLN GLN A . n A 1 78 GLU 78 465 465 GLU GLU A . n A 1 79 ILE 79 466 466 ILE ILE A . n A 1 80 ILE 80 467 467 ILE ILE A . n A 1 81 ILE 81 468 468 ILE ILE A . n A 1 82 HIS 82 469 469 HIS HIS A . n A 1 83 ASP 83 470 470 ASP ASP A . n A 1 84 GLN 84 471 471 GLN GLN A . n A 1 85 TYR 85 472 472 TYR TYR A . n A 1 86 LYS 86 473 473 LYS LYS A . n A 1 87 MET 87 474 474 MET MET A . n A 1 88 ALA 88 475 475 ALA ALA A . n A 1 89 GLU 89 476 476 GLU GLU A . n A 1 90 SER 90 477 477 SER SER A . n A 1 91 GLY 91 478 478 GLY GLY A . n A 1 92 TYR 92 479 479 TYR TYR A . n A 1 93 ASP 93 480 480 ASP ASP A . n A 1 94 ILE 94 481 481 ILE ILE A . n A 1 95 ALA 95 482 482 ALA ALA A . n A 1 96 LEU 96 483 483 LEU LEU A . n A 1 97 LEU 97 484 484 LEU LEU A . n A 1 98 LYS 98 485 485 LYS LYS A . n A 1 99 LEU 99 486 486 LEU LEU A . n A 1 100 GLU 100 487 487 GLU GLU A . n A 1 101 THR 101 488 488 THR THR A . n A 1 102 THR 102 489 489 THR THR A . n A 1 103 VAL 103 490 490 VAL VAL A . n A 1 104 ASN 104 491 491 ASN ASN A . n A 1 105 TYR 105 492 492 TYR TYR A . n A 1 106 THR 106 493 493 THR THR A . n A 1 107 ASP 107 494 494 ASP ASP A . n A 1 108 SER 108 495 495 SER SER A . n A 1 109 GLN 109 496 496 GLN GLN A . n A 1 110 ARG 110 497 497 ARG ARG A . n A 1 111 PRO 111 498 498 PRO PRO A . n A 1 112 ILE 112 499 499 ILE ILE A . n A 1 113 SER 113 500 500 SER SER A . n A 1 114 LEU 114 501 501 LEU LEU A . n A 1 115 PRO 115 502 502 PRO PRO A . n A 1 116 SER 116 503 503 SER SER A . n A 1 117 LYS 117 504 504 LYS LYS A . n A 1 118 GLY 118 505 505 GLY GLY A . n A 1 119 ASP 119 506 506 ASP ASP A . n A 1 120 ARG 120 507 507 ARG ARG A . n A 1 121 ASN 121 508 508 ASN ASN A . n A 1 122 VAL 122 509 509 VAL VAL A . n A 1 123 ILE 123 510 510 ILE ILE A . n A 1 124 TYR 124 511 511 TYR TYR A . n A 1 125 THR 125 512 512 THR THR A . n A 1 126 ASP 126 513 513 ASP ASP A . n A 1 127 CYS 127 514 514 CYS CYS A . n A 1 128 TRP 128 515 515 TRP TRP A . n A 1 129 VAL 129 516 516 VAL VAL A . n A 1 130 THR 130 517 517 THR THR A . n A 1 131 GLY 131 518 518 GLY GLY A . n A 1 132 TRP 132 519 519 TRP TRP A . n A 1 133 GLY 133 520 520 GLY GLY A . n A 1 134 TYR 134 521 521 TYR TYR A . n A 1 135 ARG 135 522 522 ARG ARG A . n A 1 136 LYS 136 523 523 LYS LYS A . n A 1 137 LEU 137 524 524 LEU LEU A . n A 1 138 ARG 138 525 525 ARG ARG A . n A 1 139 ASP 139 526 526 ASP ASP A . n A 1 140 LYS 140 527 527 LYS LYS A . n A 1 141 ILE 141 528 528 ILE ILE A . n A 1 142 GLN 142 529 529 GLN GLN A . n A 1 143 ASN 143 530 530 ASN ASN A . n A 1 144 THR 144 531 531 THR THR A . n A 1 145 LEU 145 532 532 LEU LEU A . n A 1 146 GLN 146 533 533 GLN GLN A . n A 1 147 LYS 147 534 534 LYS LYS A . n A 1 148 ALA 148 535 535 ALA ALA A . n A 1 149 LYS 149 536 536 LYS LYS A . n A 1 150 ILE 150 537 537 ILE ILE A . n A 1 151 PRO 151 538 538 PRO PRO A . n A 1 152 LEU 152 539 539 LEU LEU A . n A 1 153 VAL 153 540 540 VAL VAL A . n A 1 154 THR 154 541 541 THR THR A . n A 1 155 ASN 155 542 542 ASN ASN A . n A 1 156 GLU 156 543 543 GLU GLU A . n A 1 157 GLU 157 544 544 GLU GLU A . n A 1 158 CYS 158 545 545 CYS CYS A . n A 1 159 GLN 159 546 546 GLN GLN A . n A 1 160 LYS 160 547 547 LYS LYS A . n A 1 161 ARG 161 548 548 ARG ARG A . n A 1 162 TYR 162 549 549 TYR TYR A . n A 1 163 ARG 163 550 550 ARG ARG A . n A 1 164 GLY 164 551 551 GLY GLY A . n A 1 165 HIS 165 552 552 HIS HIS A . n A 1 166 LYS 166 553 553 LYS LYS A . n A 1 167 ILE 167 554 554 ILE ILE A . n A 1 168 THR 168 555 555 THR THR A . n A 1 169 HIS 169 556 556 HIS HIS A . n A 1 170 LYS 170 557 557 LYS LYS A . n A 1 171 MET 171 558 558 MET MET A . n A 1 172 ILE 172 559 559 ILE ILE A . n A 1 173 CYS 173 560 560 CYS CYS A . n A 1 174 ALA 174 561 561 ALA ALA A . n A 1 175 GLY 175 562 562 GLY GLY A . n A 1 176 TYR 176 563 563 TYR TYR A . n A 1 177 ARG 177 564 564 ARG ARG A . n A 1 178 GLU 178 565 565 GLU GLU A . n A 1 179 GLY 179 566 566 GLY GLY A . n A 1 180 GLY 180 567 567 GLY GLY A . n A 1 181 LYS 181 568 568 LYS LYS A . n A 1 182 ASP 182 569 569 ASP ASP A . n A 1 183 ALA 183 570 570 ALA ALA A . n A 1 184 CYS 184 571 571 CYS CYS A . n A 1 185 LYS 185 572 572 LYS LYS A . n A 1 186 GLY 186 573 573 GLY GLY A . n A 1 187 ASP 187 574 574 ASP ASP A . n A 1 188 SER 188 575 575 SER SER A . n A 1 189 GLY 189 576 576 GLY GLY A . n A 1 190 GLY 190 577 577 GLY GLY A . n A 1 191 PRO 191 578 578 PRO PRO A . n A 1 192 LEU 192 579 579 LEU LEU A . n A 1 193 SER 193 580 580 SER SER A . n A 1 194 CYS 194 581 581 CYS CYS A . n A 1 195 LYS 195 582 582 LYS LYS A . n A 1 196 HIS 196 583 583 HIS HIS A . n A 1 197 ASN 197 584 584 ASN ASN A . n A 1 198 GLU 198 585 585 GLU GLU A . n A 1 199 VAL 199 586 586 VAL VAL A . n A 1 200 TRP 200 587 587 TRP TRP A . n A 1 201 HIS 201 588 588 HIS HIS A . n A 1 202 LEU 202 589 589 LEU LEU A . n A 1 203 VAL 203 590 590 VAL VAL A . n A 1 204 GLY 204 591 591 GLY GLY A . n A 1 205 ILE 205 592 592 ILE ILE A . n A 1 206 THR 206 593 593 THR THR A . n A 1 207 SER 207 594 594 SER SER A . n A 1 208 TRP 208 595 595 TRP TRP A . n A 1 209 GLY 209 596 596 GLY GLY A . n A 1 210 GLU 210 597 597 GLU GLU A . n A 1 211 GLY 211 598 598 GLY GLY A . n A 1 212 CYS 212 599 599 CYS CYS A . n A 1 213 ALA 213 600 600 ALA ALA A . n A 1 214 GLN 214 601 601 GLN GLN A . n A 1 215 ARG 215 602 602 ARG ARG A . n A 1 216 GLU 216 603 603 GLU GLU A . n A 1 217 ARG 217 604 604 ARG ARG A . n A 1 218 PRO 218 605 605 PRO PRO A . n A 1 219 GLY 219 606 606 GLY GLY A . n A 1 220 VAL 220 607 607 VAL VAL A . n A 1 221 TYR 221 608 608 TYR TYR A . n A 1 222 THR 222 609 609 THR THR A . n A 1 223 ASN 223 610 610 ASN ASN A . n A 1 224 VAL 224 611 611 VAL VAL A . n A 1 225 VAL 225 612 612 VAL VAL A . n A 1 226 GLU 226 613 613 GLU GLU A . n A 1 227 TYR 227 614 614 TYR TYR A . n A 1 228 VAL 228 615 615 VAL VAL A . n A 1 229 ASP 229 616 616 ASP ASP A . n A 1 230 TRP 230 617 617 TRP TRP A . n A 1 231 ILE 231 618 618 ILE ILE A . n A 1 232 LEU 232 619 619 LEU LEU A . n A 1 233 GLU 233 620 620 GLU GLU A . n A 1 234 LYS 234 621 621 LYS LYS A . n A 1 235 THR 235 622 622 THR THR A . n A 1 236 GLN 236 623 623 GLN GLN A . n A 1 237 ALA 237 624 ? ? ? A . n A 1 238 VAL 238 625 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT 1 701 1 CIT CIT A . C 3 TRS 1 702 2 TRS TRS A . D 4 O61 1 703 1 O61 O61 A . E 5 HOH 1 801 3 HOH HOH A . E 5 HOH 2 802 4 HOH HOH A . E 5 HOH 3 803 5 HOH HOH A . E 5 HOH 4 804 7 HOH HOH A . E 5 HOH 5 805 8 HOH HOH A . E 5 HOH 6 806 9 HOH HOH A . E 5 HOH 7 807 11 HOH HOH A . E 5 HOH 8 808 12 HOH HOH A . E 5 HOH 9 809 13 HOH HOH A . E 5 HOH 10 810 14 HOH HOH A . E 5 HOH 11 811 15 HOH HOH A . E 5 HOH 12 812 16 HOH HOH A . E 5 HOH 13 813 17 HOH HOH A . E 5 HOH 14 814 18 HOH HOH A . E 5 HOH 15 815 20 HOH HOH A . E 5 HOH 16 816 21 HOH HOH A . E 5 HOH 17 817 24 HOH HOH A . E 5 HOH 18 818 25 HOH HOH A . E 5 HOH 19 819 26 HOH HOH A . E 5 HOH 20 820 27 HOH HOH A . E 5 HOH 21 821 28 HOH HOH A . E 5 HOH 22 822 30 HOH HOH A . E 5 HOH 23 823 32 HOH HOH A . E 5 HOH 24 824 35 HOH HOH A . E 5 HOH 25 825 36 HOH HOH A . E 5 HOH 26 826 37 HOH HOH A . E 5 HOH 27 827 40 HOH HOH A . E 5 HOH 28 828 41 HOH HOH A . E 5 HOH 29 829 43 HOH HOH A . E 5 HOH 30 830 44 HOH HOH A . E 5 HOH 31 831 45 HOH HOH A . E 5 HOH 32 832 46 HOH HOH A . E 5 HOH 33 833 47 HOH HOH A . E 5 HOH 34 834 48 HOH HOH A . E 5 HOH 35 835 50 HOH HOH A . E 5 HOH 36 836 63 HOH HOH A . E 5 HOH 37 837 67 HOH HOH A . E 5 HOH 38 838 68 HOH HOH A . E 5 HOH 39 839 71 HOH HOH A . E 5 HOH 40 840 73 HOH HOH A . E 5 HOH 41 841 83 HOH HOH A . E 5 HOH 42 842 87 HOH HOH A . E 5 HOH 43 843 94 HOH HOH A . E 5 HOH 44 844 97 HOH HOH A . E 5 HOH 45 845 109 HOH HOH A . E 5 HOH 46 846 131 HOH HOH A . E 5 HOH 47 847 132 HOH HOH A . E 5 HOH 48 848 138 HOH HOH A . E 5 HOH 49 849 139 HOH HOH A . E 5 HOH 50 850 142 HOH HOH A . E 5 HOH 51 851 143 HOH HOH A . E 5 HOH 52 852 144 HOH HOH A . E 5 HOH 53 853 145 HOH HOH A . E 5 HOH 54 854 146 HOH HOH A . E 5 HOH 55 855 147 HOH HOH A . E 5 HOH 56 856 148 HOH HOH A . E 5 HOH 57 857 149 HOH HOH A . E 5 HOH 58 858 151 HOH HOH A . E 5 HOH 59 859 152 HOH HOH A . E 5 HOH 60 860 153 HOH HOH A . E 5 HOH 61 861 156 HOH HOH A . E 5 HOH 62 862 157 HOH HOH A . E 5 HOH 63 863 162 HOH HOH A . E 5 HOH 64 864 164 HOH HOH A . E 5 HOH 65 865 165 HOH HOH A . E 5 HOH 66 866 166 HOH HOH A . E 5 HOH 67 867 169 HOH HOH A . E 5 HOH 68 868 171 HOH HOH A . E 5 HOH 69 869 174 HOH HOH A . E 5 HOH 70 870 175 HOH HOH A . E 5 HOH 71 871 177 HOH HOH A . E 5 HOH 72 872 178 HOH HOH A . E 5 HOH 73 873 179 HOH HOH A . E 5 HOH 74 874 180 HOH HOH A . E 5 HOH 75 875 181 HOH HOH A . E 5 HOH 76 876 182 HOH HOH A . E 5 HOH 77 877 183 HOH HOH A . E 5 HOH 78 878 184 HOH HOH A . E 5 HOH 79 879 185 HOH HOH A . E 5 HOH 80 880 186 HOH HOH A . E 5 HOH 81 881 187 HOH HOH A . E 5 HOH 82 882 188 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_001115 _pdbx_molecule_features.name ;N-[(2S)-1-({2-[5-CHLORO-2-(1H-TETRAZOL-1-YL)PHENYL]ETHYL}AMINO)-1-OXO-3-PHENYLPROPAN-2-YL]-3-OXO-3,4-DIHYDRO-2H-1,4-BENZOTHIAZINE-7-CARBOXAMIDE ; _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class 'Enzyme inhibitor' _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001115 _pdbx_molecule.asym_id D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-11 2 'Structure model' 1 1 2012-12-12 3 'Structure model' 1 2 2013-01-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 REFMAC refinement 5.6.0117 ? 2 d*TREK 'data reduction' . ? 3 d*TREK 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 399 ? ? -115.42 75.46 2 1 LYS A 473 ? ? -127.10 -57.33 3 1 ASP A 526 ? ? -150.46 -144.09 4 1 LEU A 532 ? ? -39.05 115.46 5 1 SER A 594 ? ? -120.57 -65.51 6 1 GLU A 603 ? ? 57.78 17.03 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 624 ? A ALA 237 2 1 Y 1 A VAL 625 ? A VAL 238 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CITRIC ACID' CIT 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 ;N-[(2S)-1-({2-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]ethyl}amino)-1-oxo-3-phenylpropan-2-yl]-3-oxo-3,4-dihydro-2H-1,4-benzothiazine-7-carboxamide ; O61 5 water HOH #