HEADER LIGASE 30-JUN-11 3SOU TITLE STRUCTURE OF UHRF1 PHD FINGER IN COMPLEX WITH HISTONE H3 1-9 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UHRF1 (UNP RESIDUES 298-367); COMPND 5 SYNONYM: INVERTED CCAAT BOX-BINDING PROTEIN OF 90 KDA, NUCLEAR COMPND 6 PROTEIN 95, NUCLEAR ZINC FINGER PROTEIN NP95, HUNP95, RING FINGER COMPND 7 PROTEIN 106, TRANSCRIPTION FACTOR ICBP90, UBIQUITIN-LIKE PHD AND RING COMPND 8 FINGER DOMAIN-CONTAINING PROTEIN 1, UBIQUITIN-LIKE-CONTAINING PHD AND COMPND 9 RING FINGER DOMAINS PROTEIN 1; COMPND 10 EC: 6.3.2.-; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: HISTONE H3; COMPND 14 CHAIN: D, E; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ICBP90, NP95, RNF106, UHRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS ZN COORDINATED PHD FINGER, HISTONE BINDING, HISTONE H3, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.RAJAKUMARA,D.J.PATEL REVDAT 3 28-FEB-24 3SOU 1 REMARK LINK REVDAT 2 08-NOV-17 3SOU 1 REMARK REVDAT 1 03-AUG-11 3SOU 0 JRNL AUTH E.RAJAKUMARA,Z.WANG,H.MA,L.HU,H.CHEN,Y.LIN,R.GUO,F.WU,H.LI, JRNL AUTH 2 F.LAN,Y.G.SHI,Y.XU,D.J.PATEL,Y.SHI JRNL TITL PHD FINGER RECOGNITION OF UNMODIFIED HISTONE H3R2 LINKS JRNL TITL 2 UHRF1 TO REGULATION OF EUCHROMATIC GENE EXPRESSION. JRNL REF MOL.CELL V. 43 275 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 21777816 JRNL DOI 10.1016/J.MOLCEL.2011.07.006 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_153 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9508 - 3.2670 0.99 2925 142 0.2007 0.2066 REMARK 3 2 3.2670 - 2.5949 1.00 2726 151 0.2288 0.2592 REMARK 3 3 2.5949 - 2.2674 1.00 2689 134 0.2222 0.2719 REMARK 3 4 2.2674 - 2.0604 1.00 2650 141 0.1967 0.2460 REMARK 3 5 2.0604 - 1.9128 1.00 2657 149 0.2042 0.2403 REMARK 3 6 1.9128 - 1.8001 0.95 2480 145 0.2310 0.2928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 40.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.65140 REMARK 3 B22 (A**2) : 1.65140 REMARK 3 B33 (A**2) : -3.30280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1222 REMARK 3 ANGLE : 1.167 1648 REMARK 3 CHIRALITY : 0.082 170 REMARK 3 PLANARITY : 0.005 224 REMARK 3 DIHEDRAL : 18.358 469 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2828 REMARK 200 MONOCHROMATOR : CRYOMECH AL300 COOLING ON A REMARK 200 SI(111) CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% W/V POLYETHYLENE GLYCOL 8,000, 0.2 REMARK 280 M SODIUM ACETATE TRIHYDRATE, 0.1 M SODIUM CACODYLATE TRIHYDRATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.17350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.60900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.60900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 138.26025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.60900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.60900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.08675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.60900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.60900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 138.26025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.60900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.60900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.08675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.17350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 311 REMARK 465 GLY A 312 REMARK 465 SER B 311 REMARK 465 LYS D 9 REMARK 465 LYS E 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 102 O HOH B 108 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 369 O ASP B 369 5655 2.05 REMARK 500 O HOH A 112 O HOH A 117 7556 2.15 REMARK 500 O HOH A 111 O HOH B 113 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 330 -161.66 -127.00 REMARK 500 ALA B 330 -157.80 -123.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 315 SG REMARK 620 2 CYS A 318 SG 109.2 REMARK 620 3 CYS A 326 SG 113.3 110.4 REMARK 620 4 CYS A 329 SG 114.4 97.5 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 331 SG REMARK 620 2 CYS A 334 SG 109.8 REMARK 620 3 HIS A 354 ND1 99.4 97.9 REMARK 620 4 CYS A 357 SG 122.5 111.4 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 346 SG REMARK 620 2 CYS A 349 SG 106.2 REMARK 620 3 CYS A 373 SG 108.3 114.5 REMARK 620 4 CYS A 376 SG 108.8 110.7 108.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 7 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 332 NE2 REMARK 620 2 GLU A 375 OE2 109.1 REMARK 620 3 HOH B 101 O 106.1 106.9 REMARK 620 4 HIS B 317 ND1 105.7 120.9 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 8 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 317 ND1 REMARK 620 2 HOH B 102 O 112.6 REMARK 620 3 HIS B 332 NE2 111.9 111.1 REMARK 620 4 GLU B 375 OE2 119.2 88.8 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 331 SG REMARK 620 2 CYS B 334 SG 110.9 REMARK 620 3 HIS B 354 ND1 101.2 99.1 REMARK 620 4 CYS B 357 SG 121.8 108.8 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 315 SG REMARK 620 2 CYS B 318 SG 108.5 REMARK 620 3 CYS B 326 SG 111.8 114.2 REMARK 620 4 CYS B 329 SG 110.3 99.7 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 6 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 346 SG REMARK 620 2 CYS B 349 SG 106.8 REMARK 620 3 CYS B 373 SG 109.7 112.8 REMARK 620 4 CYS B 376 SG 108.5 109.6 109.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SOW RELATED DB: PDB REMARK 900 STRUCTURE OF UHRF1 PROTEIN IN COMPLEX WITH METHYLATED HISTONE REMARK 900 PEPTIDE REMARK 900 RELATED ID: 3SOX RELATED DB: PDB REMARK 900 STRUCTURE OF UHRF1 PROTEIN IN THE FREE FORM DBREF 3SOU A 311 380 UNP Q96T88 UHRF1_HUMAN 298 367 DBREF 3SOU B 311 380 UNP Q96T88 UHRF1_HUMAN 298 367 DBREF 3SOU D 1 9 PDB 3SOU 3SOU 1 9 DBREF 3SOU E 1 9 PDB 3SOU 3SOU 1 9 SEQRES 1 A 70 SER GLY PRO SER CYS LYS HIS CYS LYS ASP ASP VAL ASN SEQRES 2 A 70 ARG LEU CYS ARG VAL CYS ALA CYS HIS LEU CYS GLY GLY SEQRES 3 A 70 ARG GLN ASP PRO ASP LYS GLN LEU MET CYS ASP GLU CYS SEQRES 4 A 70 ASP MET ALA PHE HIS ILE TYR CYS LEU ASP PRO PRO LEU SEQRES 5 A 70 SER SER VAL PRO SER GLU ASP GLU TRP TYR CYS PRO GLU SEQRES 6 A 70 CYS ARG ASN ASP ALA SEQRES 1 B 70 SER GLY PRO SER CYS LYS HIS CYS LYS ASP ASP VAL ASN SEQRES 2 B 70 ARG LEU CYS ARG VAL CYS ALA CYS HIS LEU CYS GLY GLY SEQRES 3 B 70 ARG GLN ASP PRO ASP LYS GLN LEU MET CYS ASP GLU CYS SEQRES 4 B 70 ASP MET ALA PHE HIS ILE TYR CYS LEU ASP PRO PRO LEU SEQRES 5 B 70 SER SER VAL PRO SER GLU ASP GLU TRP TYR CYS PRO GLU SEQRES 6 B 70 CYS ARG ASN ASP ALA SEQRES 1 D 9 ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 1 E 9 ALA ARG THR LYS GLN THR ALA ARG LYS HET ZN A 1 1 HET ZN A 2 1 HET ZN A 3 1 HET ZN A 7 1 HET ZN B 4 1 HET ZN B 5 1 HET ZN B 6 1 HET ZN B 8 1 HETNAM ZN ZINC ION FORMUL 5 ZN 8(ZN 2+) FORMUL 13 HOH *122(H2 O) HELIX 1 1 ASP A 339 ASP A 341 5 3 HELIX 2 2 ASP B 339 ASP B 341 5 3 HELIX 3 3 TYR B 356 LEU B 358 5 3 SHEET 1 A 2 GLN A 343 MET A 345 0 SHEET 2 A 2 ALA A 352 HIS A 354 -1 O PHE A 353 N LEU A 344 SHEET 1 B 2 GLN B 343 MET B 345 0 SHEET 2 B 2 ALA B 352 HIS B 354 -1 O PHE B 353 N LEU B 344 LINK ZN ZN A 1 SG CYS A 315 1555 1555 2.35 LINK ZN ZN A 1 SG CYS A 318 1555 1555 2.41 LINK ZN ZN A 1 SG CYS A 326 1555 1555 2.31 LINK ZN ZN A 1 SG CYS A 329 1555 1555 2.38 LINK ZN ZN A 2 SG CYS A 331 1555 1555 2.37 LINK ZN ZN A 2 SG CYS A 334 1555 1555 2.39 LINK ZN ZN A 2 ND1 HIS A 354 1555 1555 2.18 LINK ZN ZN A 2 SG CYS A 357 1555 1555 2.30 LINK ZN ZN A 3 SG CYS A 346 1555 1555 2.35 LINK ZN ZN A 3 SG CYS A 349 1555 1555 2.34 LINK ZN ZN A 3 SG CYS A 373 1555 1555 2.35 LINK ZN ZN A 3 SG CYS A 376 1555 1555 2.37 LINK ZN ZN A 7 NE2 HIS A 332 1555 1555 2.15 LINK ZN ZN A 7 OE2 GLU A 375 1555 1555 2.02 LINK ZN ZN A 7 O HOH B 101 1555 1555 2.34 LINK ZN ZN A 7 ND1 HIS B 317 1555 1555 2.05 LINK ND1 HIS A 317 ZN ZN B 8 1555 1555 2.00 LINK ZN ZN B 4 SG CYS B 331 1555 1555 2.32 LINK ZN ZN B 4 SG CYS B 334 1555 1555 2.32 LINK ZN ZN B 4 ND1 HIS B 354 1555 1555 2.16 LINK ZN ZN B 4 SG CYS B 357 1555 1555 2.37 LINK ZN ZN B 5 SG CYS B 315 1555 1555 2.40 LINK ZN ZN B 5 SG CYS B 318 1555 1555 2.37 LINK ZN ZN B 5 SG CYS B 326 1555 1555 2.37 LINK ZN ZN B 5 SG CYS B 329 1555 1555 2.31 LINK ZN ZN B 6 SG CYS B 346 1555 1555 2.36 LINK ZN ZN B 6 SG CYS B 349 1555 1555 2.36 LINK ZN ZN B 6 SG CYS B 373 1555 1555 2.36 LINK ZN ZN B 6 SG CYS B 376 1555 1555 2.35 LINK ZN ZN B 8 O HOH B 102 1555 1555 2.10 LINK ZN ZN B 8 NE2 HIS B 332 1555 1555 2.08 LINK ZN ZN B 8 OE2 GLU B 375 1555 1555 2.00 CISPEP 1 ASP A 359 PRO A 360 0 7.59 CISPEP 2 ASP B 359 PRO B 360 0 2.64 SITE 1 AC1 4 CYS A 315 CYS A 318 CYS A 326 CYS A 329 SITE 1 AC2 4 CYS A 331 CYS A 334 HIS A 354 CYS A 357 SITE 1 AC3 4 CYS A 346 CYS A 349 CYS A 373 CYS A 376 SITE 1 AC4 4 HIS A 332 GLU A 375 HOH B 101 HIS B 317 SITE 1 AC5 4 CYS B 331 CYS B 334 HIS B 354 CYS B 357 SITE 1 AC6 4 CYS B 315 CYS B 318 CYS B 326 CYS B 329 SITE 1 AC7 4 CYS B 346 CYS B 349 CYS B 373 CYS B 376 SITE 1 AC8 4 HIS A 317 HOH B 102 HIS B 332 GLU B 375 CRYST1 43.218 43.218 184.347 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005425 0.00000