HEADER APOPTOSIS REGULATOR/INHIBITOR 01-JUL-11 3SP7 TITLE CRYSTAL STRUCTURE OF BCL-XL BOUND TO BM903 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: BCL-XL, BCL2-L-1, APOPTOSIS REGULATOR BCL-X; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL-XL, BCL2L, BCL2L1, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS-TEV KEYWDS BCL-2-LIKE PROTEIN, APOPTOSIS REGULATOR-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.MEAGHER,J.A.STUCKEY REVDAT 4 28-FEB-24 3SP7 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3SP7 1 REMARK REVDAT 2 26-JUL-17 3SP7 1 SOURCE REMARK REVDAT 1 04-JUL-12 3SP7 0 JRNL AUTH H.ZHOU,J.CHEN,J.L.MEAGHER,A.AGUILAR,L.BAI,L.LIU,C.Y.YANG, JRNL AUTH 2 C.XIN,J.A.STUCKEY,S.WANG JRNL TITL STRUCTURE-BASED DESIGN OF A NEW CLASS OF POTENT BCL-2/BCL-XL JRNL TITL 2 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 34821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1744 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2883 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1864 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2755 REMARK 3 BIN R VALUE (WORKING SET) : 0.1863 REMARK 3 BIN FREE R VALUE : 0.1892 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.44 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.96380 REMARK 3 B22 (A**2) : 3.49310 REMARK 3 B33 (A**2) : 2.47070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.144 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.057 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.057 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.054 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.055 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1391 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1903 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 623 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 42 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 216 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1391 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 161 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1792 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.12 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|-1 - 7} REMARK 3 ORIGIN FOR THE GROUP (A): -4.5962 19.9209 -23.8862 REMARK 3 T TENSOR REMARK 3 T11: 0.0234 T22: 0.0050 REMARK 3 T33: -0.0317 T12: 0.0065 REMARK 3 T13: 0.0146 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.1573 REMARK 3 L13: 0.0799 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0002 S13: 0.0012 REMARK 3 S21: -0.0013 S22: -0.0030 S23: 0.0095 REMARK 3 S31: -0.0033 S32: -0.0137 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|8 - 29} REMARK 3 ORIGIN FOR THE GROUP (A): -13.2308 20.3560 -9.5348 REMARK 3 T TENSOR REMARK 3 T11: 0.0035 T22: -0.0018 REMARK 3 T33: 0.0011 T12: 0.0114 REMARK 3 T13: 0.0319 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.3128 L22: 0.1389 REMARK 3 L33: 0.0144 L12: -0.2826 REMARK 3 L13: -0.0421 L23: -0.1187 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.0069 S13: -0.0017 REMARK 3 S21: 0.0023 S22: 0.0131 S23: 0.0151 REMARK 3 S31: -0.0182 S32: -0.0087 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|83 - 105} REMARK 3 ORIGIN FOR THE GROUP (A): -8.0827 7.1561 -6.3827 REMARK 3 T TENSOR REMARK 3 T11: 0.0102 T22: 0.0079 REMARK 3 T33: -0.0257 T12: -0.0019 REMARK 3 T13: 0.0037 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.4395 L22: 0.3089 REMARK 3 L33: 0.1044 L12: -0.0359 REMARK 3 L13: -0.2917 L23: 0.0589 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.0029 S13: -0.0111 REMARK 3 S21: -0.0079 S22: -0.0311 S23: 0.0141 REMARK 3 S31: -0.0133 S32: -0.0055 S33: 0.0212 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|106 - 151} REMARK 3 ORIGIN FOR THE GROUP (A): 4.0095 17.1327 -7.2796 REMARK 3 T TENSOR REMARK 3 T11: 0.0142 T22: -0.0092 REMARK 3 T33: -0.0170 T12: 0.0109 REMARK 3 T13: -0.0017 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.3585 L22: 0.1860 REMARK 3 L33: 0.6803 L12: 0.1198 REMARK 3 L13: 0.1954 L23: 0.3212 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0165 S13: 0.0162 REMARK 3 S21: 0.0547 S22: -0.0108 S23: -0.0292 REMARK 3 S31: -0.0194 S32: 0.0101 S33: 0.0137 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|152 - 159} REMARK 3 ORIGIN FOR THE GROUP (A): -6.8612 26.1365 0.8046 REMARK 3 T TENSOR REMARK 3 T11: 0.0440 T22: -0.0186 REMARK 3 T33: -0.0267 T12: 0.0364 REMARK 3 T13: 0.0752 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0347 REMARK 3 L33: 0.0270 L12: -0.0053 REMARK 3 L13: -0.1594 L23: -0.0149 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0024 S13: 0.0027 REMARK 3 S21: 0.0019 S22: -0.0017 S23: -0.0042 REMARK 3 S31: -0.0015 S32: -0.0025 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|160 - 199} REMARK 3 ORIGIN FOR THE GROUP (A): -1.8982 12.3615 -16.8136 REMARK 3 T TENSOR REMARK 3 T11: 0.0096 T22: -0.0097 REMARK 3 T33: -0.0193 T12: 0.0067 REMARK 3 T13: 0.0110 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3009 L22: 1.2826 REMARK 3 L33: 0.3566 L12: -0.0770 REMARK 3 L13: -0.1967 L23: 0.4795 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.0538 S13: -0.0123 REMARK 3 S21: 0.0192 S22: 0.0064 S23: 0.0086 REMARK 3 S31: -0.0056 S32: -0.0237 S33: 0.0011 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34821 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.892 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG3000, 0.6 M ZINC ACETATE, 0.1 M REMARK 280 SODIUM ACETATE, PH 4.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.81350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.78450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.44550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.78450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.81350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.44550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 70 REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 ASN A 73 REMARK 465 ARG A 74 REMARK 465 THR A 75 REMARK 465 GLU A 76 REMARK 465 ALA A 77 REMARK 465 PRO A 78 REMARK 465 GLU A 79 REMARK 465 GLY A 80 REMARK 465 THR A 81 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -2 OG REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 ASP A 156 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 133 O HOH A 334 2.00 REMARK 500 OD1 ASP A 133 O HOH A 347 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 94.07 -163.65 REMARK 500 SER A 106 -161.96 -109.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 211 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 7 OE2 REMARK 620 2 ASP A 11 OD2 107.7 REMARK 620 3 HOH A 243 O 106.4 117.4 REMARK 620 4 HOH A 317 O 121.0 90.2 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 98 OE1 REMARK 620 2 GLU A 98 OE2 57.1 REMARK 620 3 HOH A 285 O 149.0 93.3 REMARK 620 4 ACT A 501 OXT 103.0 99.6 90.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 213 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 OE2 REMARK 620 2 HIS A 177 NE2 97.7 REMARK 620 3 ACT A 503 O 114.4 121.9 REMARK 620 4 ACT A 503 OXT 167.9 91.0 53.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 03B A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SPF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BCL-XL BOUND TO BM501 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FRAGMENT COMPRISES UNP Q07817 ISOFORM BCL-X(L) RESIDUES 1-44 AND 85- REMARK 999 209 WITH RESIDUES 45-84 DELETED. DBREF 3SP7 A 1 84 UNP Q07817 B2CL1_HUMAN 1 44 DBREF 3SP7 A 85 209 UNP Q07817 B2CL1_HUMAN 85 209 SEQADV 3SP7 SER A -2 UNP Q07817 EXPRESSION TAG SEQADV 3SP7 GLU A -1 UNP Q07817 EXPRESSION TAG SEQADV 3SP7 PHE A 0 UNP Q07817 EXPRESSION TAG SEQRES 1 A 172 SER GLU PHE MET SER GLN SER ASN ARG GLU LEU VAL VAL SEQRES 2 A 172 ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR SER SEQRES 3 A 172 TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR GLU SEQRES 4 A 172 ALA PRO GLU GLY THR GLU SER GLU ALA VAL LYS GLN ALA SEQRES 5 A 172 LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG SEQRES 6 A 172 ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR SEQRES 7 A 172 PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN SEQRES 8 A 172 GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL SEQRES 9 A 172 ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER SEQRES 10 A 172 VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA SEQRES 11 A 172 ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO SEQRES 12 A 172 TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU SEQRES 13 A 172 LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY SEQRES 14 A 172 GLN GLU ARG HET 03B A 210 63 HET ZN A 211 1 HET ZN A 212 1 HET ZN A 213 1 HET ZN A 214 1 HET ACT A 501 4 HET ACT A 502 4 HET ACT A 503 4 HETNAM 03B 5-(4-CHLOROPHENYL)-4-{3-[4-(4-{[(4-{[(2R)-4- HETNAM 2 03B (DIMETHYLAMINO)-1-(PHENYLSULFANYL)BUTAN-2-YL]AMINO}-3- HETNAM 3 03B NITROPHENYL)SULFONYL]AMINO}PHENYL)PIPERAZIN-1- HETNAM 4 03B YL]PHENYL}-1,2-DIMETHYL-1H-PYRROLE-3-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 2 03B C47 H50 CL N7 O6 S2 FORMUL 3 ZN 4(ZN 2+) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 10 HOH *175(H2 O) HELIX 1 1 SER A 2 GLN A 19 1 18 HELIX 2 2 SER A 23 PHE A 27 5 5 HELIX 3 3 GLU A 82 ARG A 102 1 21 HELIX 4 4 ARG A 103 PHE A 105 5 3 HELIX 5 5 ASP A 107 LEU A 112 1 6 HELIX 6 6 ALA A 119 PHE A 131 1 13 HELIX 7 7 ASN A 136 LYS A 157 1 22 HELIX 8 8 VAL A 161 LEU A 178 1 18 HELIX 9 9 LEU A 178 ASN A 185 1 8 HELIX 10 10 GLY A 187 ALA A 199 1 13 LINK OE2AGLU A 7 ZN ZN A 211 1555 1555 1.98 LINK OD2 ASP A 11 ZN ZN A 211 1555 1555 1.95 LINK OE1 GLU A 98 ZN ZN A 212 1555 1555 2.10 LINK OE2 GLU A 98 ZN ZN A 212 1555 1555 2.47 LINK OE2 GLU A 124 ZN ZN A 213 1555 1555 2.03 LINK NE2 HIS A 177 ZN ZN A 213 1555 1555 2.02 LINK OE2 GLU A 184 ZN ZN A 214 1555 1555 2.10 LINK ZN ZN A 211 O HOH A 243 1555 1555 2.17 LINK ZN ZN A 211 O HOH A 317 1555 1555 1.89 LINK ZN ZN A 212 O HOH A 285 1555 1555 2.06 LINK ZN ZN A 212 OXT ACT A 501 1555 1555 1.94 LINK ZN ZN A 213 O ACT A 503 1555 1555 1.97 LINK ZN ZN A 213 OXT ACT A 503 1555 1555 2.58 CISPEP 1 SER A -2 GLU A -1 0 6.66 SITE 1 AC1 30 PHE A 0 GLN A 19 LYS A 20 HOH A 32 SITE 2 AC1 30 HOH A 36 HOH A 42 GLU A 96 PHE A 97 SITE 3 AC1 30 ARG A 100 TYR A 101 ALA A 104 PHE A 105 SITE 4 AC1 30 GLU A 129 LEU A 130 ARG A 132 ASN A 136 SITE 5 AC1 30 TRP A 137 GLY A 138 ARG A 139 VAL A 141 SITE 6 AC1 30 ALA A 142 PHE A 146 ALA A 149 PHE A 191 SITE 7 AC1 30 TYR A 195 ASN A 198 ALA A 199 HOH A 246 SITE 8 AC1 30 HOH A 250 HOH A 333 SITE 1 AC2 4 GLU A 7 ASP A 11 HOH A 243 HOH A 317 SITE 1 AC3 6 LYS A 20 GLU A 98 GLU A 129 HOH A 285 SITE 2 AC3 6 HOH A 287 ACT A 501 SITE 1 AC4 4 GLU A 124 HIS A 177 GLU A 193 ACT A 503 SITE 1 AC5 1 GLU A 184 SITE 1 AC6 7 GLU A 98 GLU A 129 ALA A 149 ZN A 212 SITE 2 AC6 7 HOH A 285 HOH A 301 HOH A 329 SITE 1 AC7 3 ARG A 6 TRP A 24 SER A 28 SITE 1 AC8 6 GLU A 124 HIS A 177 GLU A 193 ASN A 197 SITE 2 AC8 6 ZN A 213 HOH A 323 CRYST1 41.627 54.891 79.569 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024023 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012568 0.00000